Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035089 Camellia sinensis var. sinensis HOM05D022698 ORTHO05D004160 4.1e-63 244.6 127 100.0
CSS0045012 Camellia sinensis var. sinensis HOM05D022698 ORTHO05D004160 1.8e-58 229.2 130 93.8
CSS0043297 Camellia sinensis var. sinensis HOM05D022698 ORTHO05D004160 1.8e-42 176.0 218 53.2
CSS0032101 Camellia sinensis var. sinensis HOM05D022698 ORTHO05D004160 1.3e-27 126.7 127 60.6
CSS0010226 Camellia sinensis var. sinensis HOM05D022698 ORTHO05D004160 1.6e-27 126.3 126 60.3
Hma1.2p1_1936F.1_g308180 Hydrangea macrophylla HOM05D003700 ORTHO05D004160 3.8e-24 115.2 130 56.2
Hma1.2p1_1936F.1_g308170 Hydrangea macrophylla HOM05D003700 ORTHO05D004160 6.5e-24 114.4 128 56.2
Hma1.2p1_2516F.1_g323665 Hydrangea macrophylla HOM05D003700 ORTHO05D004160 6.5e-24 114.4 128 56.2
Dinv19966 Davidia involucrata HOM05D003700 ORTHO05D004160 1.4e-23 113.2 135 54.1
Actinidia37626 Actinidia chinensis HOM05D003700 ORTHO05D004160 3.3e-20 102.1 130 51.5
Dinv38714 Davidia involucrata HOM05D003700 ORTHO05D004160 4.3e-20 101.7 134 52.2
Sc12g0006380 Simmondsia chinensis HOM05D003700 ORTHO05D004160 1.3e-19 100.1 115 47.8
PGSC0003DMG400033045 Solanum tuberosum HOM05D003700 ORTHO05D004160 1.3e-19 100.1 124 50.8
TAR622G0031 Trochodendron aralioides HOM05D003700 ORTHO05D004160 1.6e-19 99.8 91 60.4
Prupe.5G193800 Prunus persica HOM05D003700 ORTHO05D004160 1.4e-18 96.7 127 49.6
Nitab4.5_0011015g0030 Nicotiana tabacum HOM05D003700 ORTHO05D004160 2.4e-18 95.9 106 52.8
TAR371G1074 Trochodendron aralioides HOM05D003700 ORTHO05D004160 4.1e-18 95.1 84 59.5
Sopen06g027060 Solanum pennellii HOM05D003700 ORTHO05D004160 5.3e-18 94.7 123 48.0
FAN08G2213 Fragaria x ananassa HOM05D003700 ORTHO05D004160 9.0e-18 94.0 123 51.2
Actinidia04888 Actinidia chinensis HOM05D003700 ORTHO05D004160 2.0e-17 92.8 128 49.2
Solyc06g069770.3 Solanum lycopersicum HOM05D003700 ORTHO05D004160 2.6e-17 92.4 123 47.2
CAN.G628.1 Capsicum annuum HOM05D003700 ORTHO05D004160 4.5e-17 91.7 113 50.4
MD14G1200600 Malus domestica HOM05D003700 ORTHO05D004160 5.9e-17 91.3 127 48.0
Atru.chr11.2689 Acer truncatum HOM05D003700 ORTHO05D004160 1.7e-16 89.7 107 53.3
Haze_07324 Corylus avellana HOM05D003700 ORTHO05D004160 1.7e-16 89.7 132 43.9
Cfa018940 Carpinus fangiana HOM05D003700 ORTHO05D004160 2.2e-16 89.4 133 45.9
Sabra05G0035300 Salix brachista HOM05D003700 ORTHO05D004160 2.2e-16 89.4 129 45.7
AUR62021675 Chenopodium quinoa HOM05D003700 ORTHO05D004160 2.9e-16 89.0 117 50.4
Nitab4.5_0007189g0070 Nicotiana tabacum HOM05D003700 ORTHO05D004160 3.8e-16 88.6 128 48.4
FAN18G4275 Fragaria x ananassa HOM05D003700 ORTHO05D004160 6.5e-16 87.8 125 46.4
Sed0020544 Sechium edule HOM05D003700 ORTHO05D004160 6.5e-16 87.8 128 46.9
CiPaw.11G044800 Carya illinoinensis HOM05D003700 ORTHO05D004160 1.1e-15 87.0 130 43.8
PSO832G2691 Papaver somniferum HOM05D003700 ORTHO05D004160 1.9e-15 86.3 106 50.0
CsaV3_1G002330 Cucumis sativus L. HOM05D003700 ORTHO05D004160 2.5e-15 85.9 128 46.1
Duzib205G1944 Durio zibethinus HOM05D003700 ORTHO05D004160 7.2e-15 84.3 125 45.6
FvH4_5g14920 Fragaria vesca HOM05D003700 ORTHO05D004160 9.4e-15 84.0 125 45.6
MELO3C017173.2 Cucumis melo HOM05D003700 ORTHO05D004160 1.2e-14 83.6 112 46.4
AUR62008420 Chenopodium quinoa HOM05D003700 ORTHO05D004160 2.1e-14 82.8 123 47.2
FAN04G3111 Fragaria x ananassa HOM05D003700 ORTHO05D004160 2.1e-14 82.8 125 44.8
FAN13G0273 Fragaria x ananassa HOM05D003700 ORTHO05D004160 2.1e-14 82.8 125 44.8
Nn3g17245 Nelumbo nucifera HOM05D003700 ORTHO05D004160 4.6e-14 81.6 126 41.3
FAN13G0167 Fragaria x ananassa HOM05D003700 ORTHO05D004160 6.1e-14 81.3 125 44.0
CANSAT56G3341 Cannabis sativa HOM05D003700 ORTHO05D004160 7.9e-14 80.9 111 44.1
TWI81G0244 Tripterygium wilfordii HOM05D003700 ORTHO05D004160 7.9e-14 80.9 127 44.1
RcHm_v2.0_Chr7g0181461 Rosa chinensis HOM05D003700 ORTHO05D004160 1.0e-13 80.5 124 46.0
PGR083G2029 Punica granatum HOM05D003700 ORTHO05D004160 1.8e-13 79.7 141 40.4
vmacro11460 Vaccinium macrocarpon HOM05D003700 ORTHO05D004160 1.8e-13 79.7 59 64.4
ECA247G0346 Erigeron canadensis HOM05D003700 ORTHO05D004160 3.9e-13 78.6 117 46.2
ClCG06G016210 Citrullus lanatus HOM05D003700 ORTHO05D004160 5.1e-13 78.2 133 42.1
SGA_v2.0_scaffold7G04064 Striga asiatica HOM05D003700 ORTHO05D004160 6.7e-13 77.8 119 44.5
MSTRG.9629 Avicennia marina HOM05D003700 ORTHO05D004160 1.1e-12 77.0 92 48.9
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 1.5e-12 76.6 81 50.6
Ciclev10022133m.g Citrus clementina HOM05D003700 ORTHO05D004160 3.3e-12 75.5 117 42.7
Lalb_Chr08g0235721 Lupinus albus HOM05D003700 ORTHO05D004160 3.3e-12 75.5 82 54.9
CDE08G0283 Ceratophyllum demersum HOM05D003700 ORTHO05D004160 5.7e-12 74.7 81 45.7
Gohir.D03G093300 Gossypium hirsutum HOM05D003700 ORTHO05D004160 5.7e-12 74.7 121 43.8
Gorai.003G097200 Gossypium raimondii HOM05D003700 ORTHO05D004160 5.7e-12 74.7 121 43.8
Nitab4.5_0001128g0150 Nicotiana tabacum HOM05D003700 ORTHO05D004160 5.7e-12 74.7 73 56.2
Cc04_g16600 Coffea canephora HOM05D003700 ORTHO05D004160 7.4e-12 74.3 141 40.4
Nitab4.5_0006000g0030 Nicotiana tabacum HOM05D003700 ORTHO05D004160 7.4e-12 74.3 127 44.1
QL10p017042 Quercus lobata HOM05D003700 ORTHO05D004160 9.7e-12 73.9 74 54.1
Gohir.D11G035000 Gossypium hirsutum HOM05D003700 ORTHO05D004160 1.7e-11 73.2 125 41.6
Sabra13G0024600 Salix brachista HOM05D003700 ORTHO05D004160 1.7e-11 73.2 131 40.5
Thecc.03G087800 Theobroma cacao HOM05D003700 ORTHO05D004160 1.7e-11 73.2 125 42.4
Gohir.A11G031331 Gossypium hirsutum HOM05D003700 ORTHO05D004160 2.2e-11 72.8 122 41.0
Gorai.007G037700 Gossypium raimondii HOM05D003700 ORTHO05D004160 2.2e-11 72.8 116 41.4
HanXRQChr04g0107321 Helianthus annuus HOM05D003700 ORTHO05D004160 2.8e-11 72.4 106 45.3
Lj5A110T129 Lonicera japonica HOM05D003700 ORTHO05D004160 3.7e-11 72.0 88 53.4
Atru.chr9.273 Acer truncatum HOM05D003700 ORTHO05D004160 4.8e-11 71.6 99 45.5
Sed0006743 Sechium edule HOM05D003700 ORTHO05D004160 4.8e-11 71.6 105 44.8
PSO013G0046 Papaver somniferum HOM05D003700 ORTHO05D004160 8.2e-11 70.9 106 42.5
THA.LOC104821421 Tarenaya hassleriana HOM05D003700 ORTHO05D004160 8.2e-11 70.9 124 42.7
Gohir.A03G066800 Gossypium hirsutum HOM05D003700 ORTHO05D004160 1.1e-10 70.5 121 42.1
Medtr3g435580 Medicago truncatula HOM05D003700 ORTHO05D004160 1.4e-10 70.1 129 40.3
Eucgr.B00508 Eucalyptus grandis HOM05D003700 ORTHO05D004160 1.8e-10 69.7 58 58.6
MD06G1193500 Malus domestica HOM05D003700 ORTHO05D004160 1.8e-10 69.7 43 74.4
PGSC0003DMG400019531 Solanum tuberosum HOM05D003700 ORTHO05D004160 2.4e-10 69.3 121 43.0
SGA_v2.0_scaffold114G31908 Striga asiatica HOM05D003700 ORTHO05D004160 2.4e-10 69.3 118 44.1
HPP92_005935 Vanilla planifolia HOM05D003700 ORTHO05D004160 3.1e-10 68.9 43 65.1
Lsat_1_v5_gn_1_13920 Lactuca sativa HOM05D003700 ORTHO05D004160 4.1e-10 68.6 131 40.5
Gohir.A11G031511 Gossypium hirsutum HOM05D003700 ORTHO05D004160 6.9e-10 67.8 79 49.4
Oeu047295.1 Olea europaea HOM05D003700 ORTHO05D004160 6.9e-10 67.8 109 42.2
arahy.Tifrunner.gnm1.ann1.4WDU0A Arachis hypogaea HOM05D003700 ORTHO05D004160 1.2e-09 67.0 109 36.7
Sc04g0002660 Simmondsia chinensis HOM05D003700 ORTHO05D004160 1.2e-09 67.0 129 41.1
EL10Ac5g11021 Beta vulgaris HOM05D003700 ORTHO05D004160 1.5e-09 66.6 125 41.6
SalBow7G0736 Salvia bowleyana HOM05D003700 ORTHO05D004160 1.5e-09 66.6 121 41.3
Solyc03g116020.3 Solanum lycopersicum HOM05D003700 ORTHO05D004160 1.5e-09 66.6 121 42.1
Peaxi162Scf00013g00333 Petunia axillaris HOM05D003700 ORTHO05D004160 2.0e-09 66.2 117 36.8
Potri.005G033100 Populus trichocarpa HOM05D003700 ORTHO05D004160 2.6e-09 65.9 148 36.5
Nn4g23176 Nelumbo nucifera HOM05D003700 ORTHO05D004160 4.5e-09 65.1 38 71.1
Lj4g0000044 Lotus japonicus HOM05D003700 ORTHO05D004160 5.9e-09 64.7 121 42.1
Manes.06G092100 Manihot esculenta HOM05D003700 ORTHO05D004160 7.7e-09 64.3 127 38.6
unitig_62.g23549 Utricularia gibba HOM05D003700 ORTHO05D004160 7.7e-09 64.3 39 71.8
HanXRQChr02g0043591 Helianthus annuus HOM05D003700 ORTHO05D004160 1.3e-08 63.5 75 46.7
COL.COLO4_32291 Corchorus olitorius HOM05D003700 ORTHO05D004160 1.7e-08 63.2 116 36.2
A06p29150 Brassica napus HOM05D003700 ORTHO05D004160 2.2e-08 62.8 104 36.5
Lalb_Chr23g0273811 Lupinus albus HOM05D003700 ORTHO05D004160 2.2e-08 62.8 83 48.2
Sopen03g035010 Solanum pennellii HOM05D003700 ORTHO05D004160 2.2e-08 62.8 121 40.5
CAN.G837.20 Capsicum annuum HOM05D003700 ORTHO05D004160 2.9e-08 62.4 104 40.4
TPR.G11909 Trifolium pratense HOM05D003700 ORTHO05D004160 2.9e-08 62.4 71 50.7
Potri.013G021800 Populus trichocarpa HOM05D003700 ORTHO05D004160 5.0e-08 61.6 54 50.0
Phvul.003G190000 Phaseolus vulgaris HOM05D003700 ORTHO05D004160 6.5e-08 61.2 112 42.0
Aa31LG4G16330 Aethionema arabicum HOM05D003700 ORTHO05D004160 8.5e-08 60.8 122 38.5
Phvul.009G187000 Phaseolus vulgaris HOM05D003700 ORTHO05D004160 8.5e-08 60.8 140 37.1
COL.COLO4_35537 Corchorus olitorius HOM05D003700 ORTHO05D004160 1.4e-07 60.1 42 59.5
Migut.D01816 Erythranthe guttata HOM05D003700 ORTHO05D004160 1.4e-07 60.1 126 38.1
DCAR_016563 Daucus carota HOM05D003700 ORTHO05D004160 1.9e-07 59.7 118 37.3
Lj1g0000196 Lotus japonicus HOM05D003700 ORTHO05D004160 1.9e-07 59.7 130 37.7
Psat5g193120 Pisum sativum HOM05D003700 ORTHO05D004160 1.9e-07 59.7 43 62.8
arahy.Tifrunner.gnm1.ann1.6Q68A3 Arachis hypogaea HOM05D003700 ORTHO05D004160 2.5e-07 59.3 128 32.8
Hund02648 Selenicereus undatus HOM05D003700 ORTHO05D004160 3.2e-07 58.9 129 37.2
Glyma.05G026600 Glycine max HOM05D003700 ORTHO05D004160 4.2e-07 58.5 121 40.5
ATR1127G116 Amborella trichopoda HOM05D003700 ORTHO05D004160 7.2e-07 57.8 54 48.1
Potri.013G022500 Populus trichocarpa HOM05D003700 ORTHO05D004160 7.2e-07 57.8 119 38.7
SEGI_41222 Sequoiadendron giganteum HOM05D003700 ORTHO05D004160 7.2e-07 57.8 75 42.7
BraA06t25863Z Brassica rapa HOM05D003700 ORTHO05D004160 9.4e-07 57.4 104 35.6
BolC3t18700H Brassica oleracea HOM05D003700 ORTHO05D004160 1.2e-06 57.0 94 36.2
A02p42310 Brassica napus HOM05D003700 ORTHO05D004160 1.6e-06 56.6 120 40.0
BraA02t09160Z Brassica rapa HOM05D003700 ORTHO05D004160 1.6e-06 56.6 120 40.0
Carub.0008s2312 Capsella rubella HOM05D003700 ORTHO05D004160 1.6e-06 56.6 104 37.5
Glyma.17G100300 Glycine max HOM05D003700 ORTHO05D004160 2.1e-06 56.2 109 38.5
arahy.Tifrunner.gnm1.ann1.G7C7PJ Arachis hypogaea HOM05D003700 ORTHO05D004160 2.7e-06 55.8 127 36.2
arahy.Tifrunner.gnm1.ann1.N073K6 Arachis hypogaea HOM05D003700 ORTHO05D004160 2.7e-06 55.8 112 32.1
COL.COLO4_05649 Corchorus olitorius HOM05D001496 ORTHO05D007453 2.7e-06 55.8 101 38.6
Gohir.D11G034700 Gossypium hirsutum HOM05D003700 ORTHO05D004160 2.7e-06 55.8 136 36.0
VMungo1309G1081 Vigna mungo HOM05D003700 ORTHO05D004160 2.7e-06 55.8 141 33.3
BcaC01g02471 Brassica carinata HOM05D003700 ORTHO05D004160 3.6e-06 55.5 104 35.6
C03p64440 Brassica napus HOM05D003700 ORTHO05D004160 3.6e-06 55.5 104 35.6
Zm00001eb401550 Zea mays HOM05D003700 ORTHO05D004160 3.6e-06 55.5 33 66.7
BolC2t12276H Brassica oleracea HOM05D003700 ORTHO05D004160 4.7e-06 55.1 120 40.0
Medtr2g094530 Medicago truncatula HOM05D003700 ORTHO05D004160 4.7e-06 55.1 83 43.4
Pp3c23_7150 Physcomitrium patens HOM05D003700 ORTHO05D004160 4.7e-06 55.1 90 43.3
VMungo1215G2263 Vigna mungo HOM05D003700 ORTHO05D004160 4.7e-06 55.1 109 37.6
BcaC03g18149 Brassica carinata HOM05D003700 ORTHO05D004160 7.9e-06 54.3 38 57.9
C02p62180 Brassica napus HOM05D003700 ORTHO05D004160 7.9e-06 54.3 38 57.9


User provided reference genes

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