Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035071 Camellia sinensis var. sinensis HOM05D017261 ORTHO05D015793 2.9e-76 288.5 146 100.0
CSS0047509 Camellia sinensis var. sinensis HOM05D017261 ORTHO05D015793 5.1e-73 277.7 146 96.6
CSS0029028 Camellia sinensis var. sinensis HOM05D017261 ORTHO05D015793 2.8e-63 245.4 146 88.4
CSS0015116 Camellia sinensis var. sinensis HOM05D017261 ORTHO05D015793 6.4e-60 234.2 146 84.2
CSS0050269 Camellia sinensis var. sinensis HOM05D017261 ORTHO05D015793 1.9e-59 232.6 146 85.6
CSS0010138 Camellia sinensis var. sinensis HOM05D000570 ORTHO05D001174 3.7e-55 218.4 130 88.5
CSS0036493 Camellia sinensis var. sinensis HOM05D017261 ORTHO05D015793 4.9e-52 208.0 146 80.1
CSS0005489 Camellia sinensis var. sinensis HOM05D000570 ORTHO05D001174 7.6e-45 184.1 130 72.3
Oeu013830.1 Olea europaea HOM05D000570 ORTHO05D001174 5.3e-38 161.4 131 64.1
CSS0037529 Camellia sinensis var. sinensis HOM05D017261 ORTHO05D015793 6.5e-36 154.5 146 63.7
Lj1A1235G87 Lonicera japonica HOM05D000570 ORTHO05D001174 3.0e-33 145.6 131 62.6
PGSC0003DMG400016709 Solanum tuberosum HOM05D000570 ORTHO05D001174 1.1e-32 143.7 131 61.8
Solyc02g081070.4 Solanum lycopersicum HOM05D000570 ORTHO05D001174 3.3e-32 142.1 131 60.3
CAN.G1014.44 Capsicum annuum HOM05D000570 ORTHO05D001174 1.7e-31 139.8 131 60.3
Hma1.2p1_0298F.1_g117490 Hydrangea macrophylla HOM05D000570 ORTHO05D001174 2.4e-30 136.0 133 63.2
Sopen02g025740 Solanum pennellii HOM05D000570 ORTHO05D001174 9.1e-30 134.0 131 58.0
TAR626G0159 Trochodendron aralioides HOM05D000570 ORTHO05D001174 1.0e-28 130.6 131 55.0
GSVIVG01004806001 Vitis vinifera HOM05D000570 ORTHO05D001174 1.0e-28 130.6 130 60.0
vmacro15803 Vaccinium macrocarpon HOM05D000570 ORTHO05D001174 8.5e-28 127.5 124 60.5
Duzib235G1179 Durio zibethinus HOM05D000570 ORTHO05D001174 3.2e-27 125.6 131 56.5
Atru.chr10.2275 Acer truncatum HOM05D000570 ORTHO05D001174 2.1e-26 122.9 126 54.8
ECA236G0302 Erigeron canadensis HOM05D000570 ORTHO05D001174 2.1e-26 122.9 130 52.3
Sabra11G0008000 Salix brachista HOM05D000570 ORTHO05D001174 2.7e-26 122.5 119 57.1
MSTRG.14627 Avicennia marina HOM05D000570 ORTHO05D001174 3.6e-26 122.1 130 52.3
HanXRQChr05g0129311 Helianthus annuus HOM05D000570 ORTHO05D001174 4.7e-26 121.7 130 52.3
Lsat_1_v5_gn_7_15161 Lactuca sativa HOM05D000570 ORTHO05D001174 6.1e-26 121.3 130 52.3
Lalb_Chr20g0118921 Lupinus albus HOM05D000570 ORTHO05D001174 8.8e-25 117.5 125 53.6
DCAR_024985 Daucus carota HOM05D000570 ORTHO05D001174 1.1e-24 117.1 132 54.5
Cpa.g.sc152.51 Carica papaya HOM05D000570 ORTHO05D001174 1.5e-24 116.7 124 54.8
TPR.G12988 Trifolium pratense HOM05D000570 ORTHO05D001174 9.7e-24 114.0 126 54.8
Cc09_g01270 Coffea canephora HOM05D000570 ORTHO05D001174 1.7e-23 113.2 129 55.0
Rhsim02G0105000 Rhododendron simsii HOM05D000570 ORTHO05D001174 3.7e-23 112.1 131 53.4
MD10G1326000 Malus domestica HOM05D000570 ORTHO05D001174 1.4e-22 110.2 129 51.9
Nitab4.5_0012576g0010 Nicotiana tabacum HOM05D000570 ORTHO05D001174 1.8e-22 109.8 129 51.2
Actinidia39260 Actinidia chinensis HOM05D000570 ORTHO05D001174 2.4e-22 109.4 130 50.8
MD05G1351900 Malus domestica HOM05D000570 ORTHO05D001174 3.1e-22 109.0 129 50.4
Gorai.010G183400 Gossypium raimondii HOM05D000570 ORTHO05D001174 4.1e-22 108.6 128 53.9
COL.COLO4_31827 Corchorus olitorius HOM05D000570 ORTHO05D001174 5.3e-22 108.2 131 48.9
Gohir.A06G150700 Gossypium hirsutum HOM05D000570 ORTHO05D001174 2.0e-21 106.3 128 52.3
QL05p072009 Quercus lobata HOM05D000570 ORTHO05D001174 2.0e-21 106.3 128 50.8
Gohir.D06G156900 Gossypium hirsutum HOM05D000570 ORTHO05D001174 2.6e-21 105.9 128 53.1
Thecc.06G227500 Theobroma cacao HOM05D000570 ORTHO05D001174 2.6e-21 105.9 131 51.1
Potri.011G010500 Populus trichocarpa HOM05D000570 ORTHO05D001174 5.9e-21 104.8 112 52.7
CANSAT56G2530 Cannabis sativa HOM05D000570 ORTHO05D001174 1.0e-20 104.0 130 47.7
Migut.H01588 Erythranthe guttata HOM05D000570 ORTHO05D001174 1.3e-20 103.6 130 45.4
Peaxi162Scf00178g00216 Petunia axillaris HOM05D000570 ORTHO05D001174 5.0e-20 101.7 120 52.5
Manes.16G003200 Manihot esculenta HOM05D000570 ORTHO05D001174 6.5e-20 101.3 105 54.3
SGA_v2.0_scaffold49G18250 Striga asiatica HOM05D000570 ORTHO05D001174 6.5e-20 101.3 118 50.8
Potri.004G005301 Populus trichocarpa HOM05D000570 ORTHO05D001174 8.5e-20 100.9 122 47.5
Nitab4.5_0001409g0210 Nicotiana tabacum HOM05D000570 ORTHO05D001174 1.4e-19 100.1 118 53.4
SGA_v2.0_scaffold89G27483 Striga asiatica HOM05D000570 ORTHO05D001174 4.2e-19 98.6 152 43.4
HanXRQChr15g0470551 Helianthus annuus HOM05D000570 ORTHO05D001174 1.2e-18 97.1 130 44.6
Ciclev10014418m.g Citrus clementina HOM05D000570 ORTHO05D001174 8.0e-18 94.4 129 47.3
Lsat_1_v5_gn_0_22980 Lactuca sativa HOM05D000570 ORTHO05D001174 1.0e-17 94.0 116 51.7
QL02p081725 Quercus lobata HOM05D017261 ORTHO05D015793 1.4e-17 93.6 75 66.7
FvH4_3g01460 Fragaria vesca HOM05D000570 ORTHO05D001174 1.8e-17 93.2 109 50.5
Phvul.006G146100 Phaseolus vulgaris HOM05D000570 ORTHO05D001174 1.8e-17 93.2 125 45.6
Hund21434 Selenicereus undatus HOM05D000570 ORTHO05D001174 1.8e-17 93.2 130 43.8
Glyma.15G111600 Glycine max HOM05D000570 ORTHO05D001174 3.9e-17 92.0 125 46.4
Sc05g0009430 Simmondsia chinensis HOM05D000570 ORTHO05D001174 1.1e-16 90.5 130 48.5
FAN21G0433 Fragaria x ananassa HOM05D000570 ORTHO05D001174 1.5e-16 90.1 109 49.5
PSO210G6440 Papaver somniferum HOM05D000570 ORTHO05D001174 3.3e-16 89.0 133 43.6
PSO832G2605 Papaver somniferum HOM05D000570 ORTHO05D001174 3.3e-16 89.0 133 40.6
TAR624G1309 Trochodendron aralioides HOM05D000570 ORTHO05D001174 3.3e-16 89.0 108 48.1
Sabra04G0002700 Salix brachista HOM05D000570 ORTHO05D001174 4.4e-16 88.6 120 42.5
Aqoxy1G03467 Aquilegia oxysepala HOM05D000570 ORTHO05D001174 5.7e-16 88.2 121 46.3
Haze_06852 Corylus avellana HOM05D000570 ORTHO05D001174 2.8e-15 85.9 112 47.3
CsaV3_1G046110 Cucumis sativus L. HOM05D000570 ORTHO05D001174 3.7e-15 85.5 128 41.4
MBI19_g45795_MAGBIO Magnolia biondii HOM05D000570 ORTHO05D001174 3.7e-15 85.5 96 49.0
PGR004G0535 Punica granatum HOM05D000570 ORTHO05D001174 1.8e-14 83.2 121 42.1
Lalb_Chr15g0087741 Lupinus albus HOM05D000570 ORTHO05D001174 2.4e-14 82.8 125 44.8
Os02g0190500 Oryza sativa ssp. japonica HOM05D000570 ORTHO05D001174 2.4e-14 82.8 135 38.5
THA.LOC104813393 Tarenaya hassleriana HOM05D000570 ORTHO05D001174 2.4e-14 82.8 126 45.2
Gohir.A10G011100 Gossypium hirsutum HOM05D000570 ORTHO05D001174 3.1e-14 82.4 131 43.5
CiPaw.10G074100 Carya illinoinensis HOM05D000570 ORTHO05D001174 7.0e-14 81.3 110 45.5
CDE04G0812 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 9.1e-14 80.9 129 41.1
Medtr2g024330 Medicago truncatula HOM05D000570 ORTHO05D001174 2.0e-13 79.7 111 49.5
RcHm_v2.0_Chr5g0002301 Rosa chinensis HOM05D000570 ORTHO05D001174 3.5e-13 79.0 116 46.6
Gorai.011G011800 Gossypium raimondii HOM05D000570 ORTHO05D001174 5.9e-13 78.2 131 42.7
Zm00001eb234920 Zea mays HOM05D000570 ORTHO05D001174 5.9e-13 78.2 139 35.3
ATR0686G143 Amborella trichopoda HOM05D000570 ORTHO05D015793 7.7e-13 77.8 136 41.9
THA.LOC104812980 Tarenaya hassleriana HOM05D000570 ORTHO05D001174 7.7e-13 77.8 125 43.2
Ah.09g234550 Amaranthus hybridus HOM05D000570 ORTHO05D001174 2.9e-12 75.9 113 39.8
Gohir.D10G010700 Gossypium hirsutum HOM05D000570 ORTHO05D001174 1.5e-11 73.6 131 42.0
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 1.5e-11 73.6 142 35.9
CiPaw.09G097400 Carya illinoinensis HOM05D000570 ORTHO05D001174 1.9e-11 73.2 111 43.2
Prupe.4G015700 Prunus persica HOM05D000570 ORTHO05D001174 4.2e-11 72.0 115 43.5
TWI38G1871 Tripterygium wilfordii HOM05D000570 ORTHO05D001174 5.5e-11 71.6 112 45.5
Ca_00690_v3 Cicer arietinum L. HOM05D000570 ORTHO05D001174 7.2e-11 71.2 110 47.3
Lj6g0005851 Lotus japonicus HOM05D000570 ORTHO05D001174 7.2e-11 71.2 126 44.4
CDE06G1424 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 9.4e-11 70.9 127 39.4
Zm00001eb275550 Zea mays HOM05D000570 ORTHO05D001174 2.1e-10 69.7 135 37.8
FAN25G3172 Fragaria x ananassa HOM05D000570 ORTHO05D001174 1.0e-09 67.4 108 44.4
Glyma.09G007200 Glycine max HOM05D000570 ORTHO05D001174 1.4e-09 67.0 113 45.1
Psat1g175520 Pisum sativum HOM05D000570 ORTHO05D001174 1.8e-09 66.6 111 45.9
VMungo0540G1870 Vigna mungo HOM05D000570 ORTHO05D001174 4.0e-09 65.5 128 39.1
CARHR044040 Cardamine hirsuta HOM05D000570 ORTHO05D001174 5.2e-09 65.1 119 37.8
Thhalv10020162m.g Eutrema salsugineum HOM05D000570 ORTHO05D001174 2.6e-08 62.8 140 38.6
ATR0693G317 Amborella trichopoda HOM05D000570 ORTHO05D002740 3.3e-08 62.4 118 34.7
Hund23438 Selenicereus undatus HOM05D000570 ORTHO05D001174 3.3e-08 62.4 34 70.6
HPP92_012346 Vanilla planifolia HOM05D000570 ORTHO05D002740 3.3e-08 62.4 118 39.0
Hund05695 Selenicereus undatus HOM05D000570 ORTHO05D001174 7.5e-08 61.2 138 33.3
SEGI_17819 Sequoiadendron giganteum HOM05D000570 ORTHO05D001174 9.7e-08 60.8 130 37.7
Carub.0001s4301 Capsella rubella HOM05D000570 ORTHO05D001174 1.7e-07 60.1 139 36.0
CDE07G0083 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 2.2e-07 59.7 97 40.2
Cfa000167 Carpinus fangiana HOM05D000570 ORTHO05D001174 2.8e-07 59.3 80 46.2
RcHm_v2.0_Chr2g0148621 Rosa chinensis HOM05D000570 ORTHO05D001174 3.7e-07 58.9 113 36.3
Eucgr.D01360 Eucalyptus grandis HOM05D000570 ORTHO05D001174 4.8e-07 58.5 77 46.8
arahy.Tifrunner.gnm1.ann1.195J1V Arachis hypogaea HOM05D000570 ORTHO05D001174 1.8e-06 56.6 112 41.1
ECA232G1572 Erigeron canadensis HOM05D000570 ORTHO05D001174 1.8e-06 56.6 139 35.3
FvH4_6g36180 Fragaria vesca HOM05D000570 ORTHO05D001174 1.8e-06 56.6 116 34.5
FAN02G2943 Fragaria x ananassa HOM05D000570 ORTHO05D001174 1.8e-06 56.6 116 34.5
AUR62021905 Chenopodium quinoa HOM05D000570 ORTHO05D001174 2.4e-06 56.2 137 32.1
FAN09G4028 Fragaria x ananassa HOM05D000570 ORTHO05D001174 2.4e-06 56.2 116 34.5
FAN14G1844 Fragaria x ananassa HOM05D000570 ORTHO05D001174 2.4e-06 56.2 116 34.5
Manes.17G027800 Manihot esculenta HOM05D000570 ORTHO05D001174 2.4e-06 56.2 28 82.1
BcaC05g29092 Brassica carinata HOM05D000570 ORTHO05D001174 3.1e-06 55.8 148 37.8
C05p53010 Brassica napus HOM05D000570 ORTHO05D001174 3.1e-06 55.8 148 37.8
BolC5t33981H Brassica oleracea HOM05D000570 ORTHO05D001174 3.1e-06 55.8 148 37.8
FAN14G0721 Fragaria x ananassa HOM05D000570 ORTHO05D001174 3.1e-06 55.8 116 34.5
Rhsim06G0149400 Rhododendron simsii HOM05D000570 ORTHO05D002740 3.1e-06 55.8 132 38.6
THA.LOC104810401 Tarenaya hassleriana HOM05D000570 ORTHO05D001174 3.1e-06 55.8 42 61.9
MELO3C021727.2 Cucumis melo HOM05D000570 ORTHO05D001174 4.1e-06 55.5 112 34.8
CsaV3_3G031130 Cucumis sativus L. HOM05D000570 ORTHO05D001174 4.1e-06 55.5 126 34.1
DCAR_002200 Daucus carota HOM05D000570 ORTHO05D001174 4.1e-06 55.5 103 42.7
Manes.11G011300 Manihot esculenta HOM05D000570 ORTHO05D001174 4.1e-06 55.5 50 54.0
Os07g0618400 Oryza sativa ssp. japonica HOM05D000570 ORTHO05D001174 4.1e-06 55.5 41 58.5
Rhsim08G0251800 Rhododendron simsii HOM05D000570 ORTHO05D001174 5.3e-06 55.1 95 41.1
arahy.Tifrunner.gnm1.ann1.W4Y87I Arachis hypogaea HOM05D000570 ORTHO05D001174 7.0e-06 54.7 112 40.2
Gohir.D05G116500 Gossypium hirsutum HOM05D000570 ORTHO05D001174 7.0e-06 54.7 110 40.9
Gorai.009G120500 Gossypium raimondii HOM05D000570 ORTHO05D001174 7.0e-06 54.7 110 40.9
CDE06G2079 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 9.1e-06 54.3 97 38.1
PSO675G5957 Papaver somniferum HOM05D000570 ORTHO05D002740 9.1e-06 54.3 161 31.1


User provided reference genes

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