Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035057 Camellia sinensis var. sinensis HOM05D000949 ORTHO05D001893 2.3e-63 245.4 122 100.0
CSS0042580 Camellia sinensis var. sinensis HOM05D000949 ORTHO05D009565 1.4e-52 209.5 127 84.3
vmacro07950 Vaccinium macrocarpon HOM05D000949 ORTHO05D009565 2.0e-30 136.0 133 56.4
Rhsim04G0241500 Rhododendron simsii HOM05D000949 ORTHO05D009565 1.4e-28 129.8 136 60.3
Actinidia31565 Actinidia chinensis HOM05D000949 ORTHO05D009565 7.1e-28 127.5 136 58.8
Actinidia18472 Actinidia chinensis HOM05D000949 ORTHO05D009565 7.8e-27 124.0 134 56.0
Dinv44261 Davidia involucrata HOM05D000949 ORTHO05D009565 3.0e-26 122.1 138 51.4
Rhsim05G0128400 Rhododendron simsii HOM05D001607 ORTHO05D001893 1.3e-21 106.7 122 54.9
TAR362G0920 Trochodendron aralioides HOM05D000949 ORTHO05D009565 3.9e-18 95.1 140 43.6
GSVIVG01034960001 Vitis vinifera HOM05D000949 ORTHO05D009565 3.1e-15 85.5 134 42.5
Nn3g21781 Nelumbo nucifera HOM05D000949 ORTHO05D009565 5.3e-15 84.7 141 41.1
Hma1.2p1_0013F.1_g008290 Hydrangea macrophylla HOM05D000949 ORTHO05D009565 6.9e-15 84.3 146 39.7
MBI19_g03269_MAGBIO Magnolia biondii HOM05D000949 ORTHO05D009565 4.9e-13 78.2 140 40.7
arahy.Tifrunner.gnm1.ann1.7IYA67 Arachis hypogaea HOM05D000949 ORTHO05D009565 1.4e-12 76.6 87 52.9
Cc03_g00580 Coffea canephora HOM05D000949 ORTHO05D009565 3.2e-12 75.5 132 38.6
Lj6g0003299 Lotus japonicus HOM05D000949 ORTHO05D009565 7.1e-12 74.3 87 52.9
arahy.Tifrunner.gnm1.ann1.UM9WQL Arachis hypogaea HOM05D000949 ORTHO05D009565 9.3e-12 73.9 87 51.7
Haze_01340 Corylus avellana HOM05D000949 ORTHO05D009565 2.1e-11 72.8 122 41.0
HanXRQChr13g0394751 Helianthus annuus HOM05D000949 ORTHO05D009565 4.6e-11 71.6 117 43.6
QL06p012857 Quercus lobata HOM05D000949 ORTHO05D009565 7.9e-11 70.9 111 42.3
Lj6C694G3 Lonicera japonica HOM05D000949 ORTHO05D009565 1.0e-10 70.5 52 65.4
Manes.03G207200 Manihot esculenta HOM05D000949 ORTHO05D009565 1.0e-10 70.5 98 43.9
THA.LOC104818875 Tarenaya hassleriana HOM05D000949 ORTHO05D009565 3.0e-10 68.9 132 40.9
Lsat_1_v5_gn_6_341 Lactuca sativa HOM05D000949 ORTHO05D009565 5.1e-10 68.2 98 44.9
Peaxi162Scf00228g00621 Petunia axillaris HOM05D000949 ORTHO05D009565 5.1e-10 68.2 54 59.3
MSTRG.10165 Avicennia marina HOM05D000949 ORTHO05D009565 1.9e-09 66.2 52 59.6
CAN.G126.30 Capsicum annuum HOM05D000949 ORTHO05D009565 4.3e-09 65.1 59 54.2
Cpa.g.sc9.23 Carica papaya HOM05D000949 ORTHO05D009565 4.3e-09 65.1 139 35.3
Gohir.D02G060800 Gossypium hirsutum HOM05D000949 ORTHO05D009565 5.6e-09 64.7 51 62.7
Gorai.005G068400 Gossypium raimondii HOM05D000949 ORTHO05D009565 7.4e-09 64.3 51 62.7
Peaxi162Scf01160g00149 Petunia axillaris HOM05D000949 ORTHO05D009565 1.3e-08 63.5 54 51.9
Cfa015282 Carpinus fangiana HOM05D000949 ORTHO05D009565 2.1e-08 62.8 125 37.6
CiPaw.01G135500 Carya illinoinensis HOM05D000949 ORTHO05D009565 2.1e-08 62.8 52 57.7
HanXRQChr09g0250471 Helianthus annuus HOM05D000949 ORTHO05D009565 2.1e-08 62.8 57 50.9
Nitab4.5_0002294g0110 Nicotiana tabacum HOM05D000949 ORTHO05D009565 2.1e-08 62.8 51 52.9
PSO170G2901 Papaver somniferum HOM05D000949 ORTHO05D009565 3.7e-08 62.0 97 41.2
PGSC0003DMG400004615 Solanum tuberosum HOM05D000949 ORTHO05D009565 4.8e-08 61.6 72 41.7
Thecc.04G305100 Theobroma cacao HOM05D000949 ORTHO05D009565 4.8e-08 61.6 51 58.8
Gohir.A02G055700 Gossypium hirsutum HOM05D000949 ORTHO05D009565 6.2e-08 61.2 51 60.8
Sopen12g033860 Solanum pennellii HOM05D000949 ORTHO05D009565 8.1e-08 60.8 51 51.0
Solyc12g099180.3 Solanum lycopersicum HOM05D000949 ORTHO05D009565 1.1e-07 60.5 51 51.0
PGSC0003DMG400029059 Solanum tuberosum HOM05D000949 ORTHO05D009565 1.1e-07 60.5 54 51.9
Nitab4.5_0002150g0020 Nicotiana tabacum HOM05D000949 ORTHO05D009565 1.4e-07 60.1 51 51.0
PSO357G0461 Papaver somniferum HOM05D000949 ORTHO05D009565 1.4e-07 60.1 96 40.6
EL10Ac3g05543 Beta vulgaris HOM05D000949 ORTHO05D009565 1.8e-07 59.7 52 55.8
A05p41480 Brassica napus HOM05D000949 ORTHO05D009565 5.3e-07 58.2 51 51.0
C05p60670 Brassica napus HOM05D000949 ORTHO05D009565 5.3e-07 58.2 51 51.0
BolC5t34727H Brassica oleracea HOM05D000949 ORTHO05D009565 5.3e-07 58.2 51 51.0
Hund03142 Selenicereus undatus HOM05D000949 ORTHO05D009565 5.3e-07 58.2 52 50.0
Sc13g0007150 Simmondsia chinensis HOM05D000949 ORTHO05D009565 5.3e-07 58.2 128 38.3
Hund11989 Selenicereus undatus HOM05D000949 ORTHO05D009565 6.9e-07 57.8 106 40.6
TWI09G0276 Tripterygium wilfordii HOM05D000949 ORTHO05D009565 6.9e-07 57.8 51 54.9
Lalb_Chr20g0120731 Lupinus albus HOM05D000949 ORTHO05D009565 9.0e-07 57.4 71 47.9
Aa31LG5G17110 Aethionema arabicum HOM05D000949 ORTHO05D009565 1.5e-06 56.6 109 38.5
Phvul.006G119900 Phaseolus vulgaris HOM05D000949 ORTHO05D009565 1.5e-06 56.6 100 41.0
VMungo0540G1062 Vigna mungo HOM05D000949 ORTHO05D009565 1.5e-06 56.6 97 42.3
Ah.07g201620 Amaranthus hybridus HOM05D000949 ORTHO05D009565 2.6e-06 55.8 50 56.0
Lalb_Chr18g0058591 Lupinus albus HOM05D000949 ORTHO05D009565 3.4e-06 55.5 52 53.8
Atru.chr4.3058 Acer truncatum HOM05D000949 ORTHO05D009565 4.5e-06 55.1 51 49.0
BraA05t22868Z Brassica rapa HOM05D000949 ORTHO05D009565 4.5e-06 55.1 51 49.0
Lalb_Chr15g0089121 Lupinus albus HOM05D000949 ORTHO05D009565 4.5e-06 55.1 69 47.8
SGA_v2.0_scaffold157G37337 Striga asiatica HOM05D000949 ORTHO05D009565 5.8e-06 54.7 51 52.9


User provided reference genes

Program Settings