Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035054 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 4.3e-147 524.6 263 100.0
CSS0018421 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 1.4e-145 519.6 261 99.6
vmacro15124 Vaccinium macrocarpon HOM05D006128 ORTHO05D007466 2.5e-107 392.5 266 80.5
Actinidia25836 Actinidia chinensis HOM05D006128 ORTHO05D007466 1.7e-103 379.8 263 75.7
Duzib138G0044 Durio zibethinus HOM05D006128 ORTHO05D007466 2.9e-103 379.0 260 75.0
Rhsim01G0289400 Rhododendron simsii HOM05D006128 ORTHO05D007466 3.8e-103 378.6 310 69.4
Potri.002G198400 Populus trichocarpa HOM05D006128 ORTHO05D007466 8.8e-100 367.5 268 71.6
Manes.05G001900 Manihot esculenta HOM05D006128 ORTHO05D007466 1.5e-99 366.7 264 73.1
QL12p028969 Quercus lobata HOM05D006128 ORTHO05D007466 1.5e-99 366.7 270 70.0
Atru.chr5.1049 Acer truncatum HOM05D006128 ORTHO05D007466 2.0e-99 366.3 267 72.7
Gorai.004G050700 Gossypium raimondii HOM05D006128 ORTHO05D007466 7.4e-99 364.4 259 70.7
Gohir.D08G051000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 9.7e-99 364.0 259 70.7
FvH4_5g39570 Fragaria vesca HOM05D006128 ORTHO05D007466 4.8e-98 361.7 257 72.4
FAN04G2463 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.4e-97 360.1 257 72.4
FAN08G0466 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.4e-97 360.1 249 73.5
FAN18G2733 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.4e-97 360.1 246 74.0
FAN13G2048 Fragaria x ananassa HOM05D006128 ORTHO05D007466 4.1e-97 358.6 257 72.0
CSS0004097 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 1.2e-96 357.1 187 93.0
Gohir.A08G040900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.6e-96 355.9 265 69.1
Dinv33101 Davidia involucrata HOM05D006128 ORTHO05D007466 4.5e-96 355.1 216 81.9
Potri.014G122900 Populus trichocarpa HOM05D006128 ORTHO05D007466 7.7e-96 354.4 262 71.0
Manes.01G226000 Manihot esculenta HOM05D006128 ORTHO05D007466 2.2e-95 352.8 287 65.9
Cfa005831 Carpinus fangiana HOM05D006128 ORTHO05D007466 6.5e-95 351.3 262 71.4
TWI36G0171 Tripterygium wilfordii HOM05D006128 ORTHO05D007466 8.5e-95 350.9 269 67.7
Nitab4.5_0000116g0090 Nicotiana tabacum HOM05D006128 ORTHO05D007466 2.5e-94 349.4 249 72.7
Haze_05012 Corylus avellana HOM05D006128 ORTHO05D007466 3.2e-94 349.0 263 71.5
Cpa.g.sc18.8 Carica papaya HOM05D006128 ORTHO05D007466 1.2e-93 347.1 245 71.4
Nitab4.5_0000906g0110 Nicotiana tabacum HOM05D006128 ORTHO05D007466 1.6e-93 346.7 268 68.7
Cc08_g11810 Coffea canephora HOM05D006128 ORTHO05D007466 2.7e-93 345.9 269 69.5
Prupe.8G269800 Prunus persica HOM05D006128 ORTHO05D007466 6.1e-93 344.7 246 71.5
GSVIVG01028088001 Vitis vinifera HOM05D006128 ORTHO05D007466 1.0e-92 344.0 263 71.1
Hma1.2p1_1302F.1_g274310 Hydrangea macrophylla HOM05D006128 ORTHO05D007466 1.4e-92 343.6 226 80.1
Ciclev10021788m.g Citrus clementina HOM05D006128 ORTHO05D007466 3.9e-92 342.0 268 70.5
Ca_10299_v3 Cicer arietinum L. HOM05D006128 ORTHO05D007466 6.7e-92 341.3 261 70.1
MD03G1297200 Malus domestica HOM05D006128 ORTHO05D007466 2.6e-91 339.3 246 72.4
CiPaw.07G115100 Carya illinoinensis HOM05D006128 ORTHO05D007466 4.4e-91 338.6 271 68.3
Medtr1g087500 Medicago truncatula HOM05D006128 ORTHO05D007466 4.4e-91 338.6 258 69.8
MD11G1317000 Malus domestica HOM05D006128 ORTHO05D007466 5.7e-91 338.2 246 72.0
Sabra02G0159200 Salix brachista HOM05D002340 ORTHO05D003624 9.7e-91 337.4 254 70.1
COL.COLO4_23260 Corchorus olitorius HOM05D006128 ORTHO05D007466 2.8e-90 335.9 265 67.9
TPR.G19756 Trifolium pratense HOM05D006128 ORTHO05D007466 8.2e-90 334.3 256 69.1
CAN.G69.3 Capsicum annuum HOM05D006128 ORTHO05D007466 2.4e-89 332.8 276 64.9
Psat6g163320 Pisum sativum HOM05D006128 ORTHO05D007466 2.4e-89 332.8 259 67.6
Solyc01g079640.4 Solanum lycopersicum HOM05D006128 ORTHO05D007466 3.1e-89 332.4 247 69.2
PGSC0003DMG400009003 Solanum tuberosum HOM05D006128 ORTHO05D007466 4.1e-89 332.0 278 64.4
Sopen01g031420 Solanum pennellii HOM05D006128 ORTHO05D007466 5.3e-89 331.6 279 63.8
Nn3g21633 Nelumbo nucifera HOM05D006128 ORTHO05D007466 7.0e-89 331.3 264 68.2
Peaxi162Scf00001g00252 Petunia axillaris HOM05D006128 ORTHO05D007466 1.2e-88 330.5 245 69.8
TAR633G2533 Trochodendron aralioides HOM05D006128 ORTHO05D007466 1.6e-88 330.1 273 65.9
Gorai.007G124300 Gossypium raimondii HOM05D006128 ORTHO05D007466 4.5e-88 328.6 258 66.3
Sabra14G0091300 Salix brachista HOM05D006128 ORTHO05D007466 1.3e-87 327.0 273 66.3
Lj5g0013562 Lotus japonicus HOM05D006128 ORTHO05D007466 3.8e-87 325.5 259 67.6
Lj1A19T25 Lonicera japonica HOM05D006128 ORTHO05D007466 5.0e-87 325.1 247 71.7
Glyma.02G014100 Glycine max HOM05D006128 ORTHO05D007466 2.5e-86 322.8 225 74.2
Thecc.01G310500 Theobroma cacao HOM05D006128 ORTHO05D007466 3.2e-86 322.4 220 73.2
Sed0005948 Sechium edule HOM05D006128 ORTHO05D007466 1.2e-85 320.5 263 67.7
arahy.Tifrunner.gnm1.ann1.G5X8S7 Arachis hypogaea HOM05D006128 ORTHO05D007466 4.7e-85 318.5 259 68.0
TAR362G1032 Trochodendron aralioides HOM05D006128 ORTHO05D007466 1.0e-84 317.4 273 64.5
Hund09615 Selenicereus undatus HOM05D006128 ORTHO05D007466 4.0e-84 315.5 262 64.9
MBI19_g22894_MAGBIO Magnolia biondii HOM05D006128 ORTHO05D007466 5.2e-84 315.1 277 63.5
Duzib133G0480 Durio zibethinus HOM05D006128 ORTHO05D007466 6.7e-84 314.7 220 71.8
CsaV3_4G001120 Cucumis sativus L. HOM05D006128 ORTHO05D007466 3.3e-83 312.4 266 66.2
arahy.Tifrunner.gnm1.ann1.M4G7E6 Arachis hypogaea HOM05D006128 ORTHO05D007466 4.4e-83 312.0 285 61.8
MELO3C032866.2 Cucumis melo HOM05D006128 ORTHO05D007466 7.5e-83 311.2 266 65.8
Lalb_Chr02g0146681 Lupinus albus HOM05D006128 ORTHO05D007466 6.3e-82 308.1 269 61.7
EL10As5g23499 Beta vulgaris HOM05D006128 ORTHO05D007466 2.7e-80 302.8 252 62.7
Phvul.007G216000 Phaseolus vulgaris HOM05D006128 ORTHO05D007466 1.7e-79 300.1 229 69.9
VMungo0720G2147 Vigna mungo HOM05D006128 ORTHO05D007466 2.2e-79 299.7 229 70.7
DCAR_002874 Daucus carota HOM05D006128 ORTHO05D007466 3.2e-78 295.8 281 61.9
Gohir.A12G126500 Gossypium hirsutum HOM05D006128 ORTHO05D007466 3.2e-78 295.8 247 66.4
Gorai.008G141200 Gossypium raimondii HOM05D006128 ORTHO05D007466 2.7e-77 292.7 250 65.6
PGR044G1105 Punica granatum HOM05D006128 ORTHO05D007466 1.4e-76 290.4 280 60.7
Gohir.D12G130000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.6e-75 286.2 250 64.8
THA.LOC104801298 Tarenaya hassleriana HOM05D006128 ORTHO05D007466 2.4e-73 279.6 259 59.8
Migut.D00098 Erythranthe guttata HOM05D006128 ORTHO05D007466 1.3e-71 273.9 264 62.1
Aqoxy2G02213 Aquilegia oxysepala HOM05D006128 ORTHO05D007466 3.8e-71 272.3 254 60.6
CANSAT35G0097 Cannabis sativa HOM05D006128 ORTHO05D007466 4.2e-70 268.9 270 59.3
HanXRQChr15g0464211 Helianthus annuus HOM05D006128 ORTHO05D007466 4.2e-70 268.9 245 61.2
Oeu008455.2 Olea europaea HOM05D006128 ORTHO05D007466 4.2e-70 268.9 262 59.9
Glyma.10G014800 Glycine max HOM05D006128 ORTHO05D007466 2.1e-69 266.5 226 64.6
Gohir.A11G110900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 6.1e-69 265.0 216 62.5
PSO357G0491 Papaver somniferum HOM05D006128 ORTHO05D007466 3.0e-68 262.7 267 57.3
PSO170G2201 Papaver somniferum HOM05D006128 ORTHO05D007466 8.9e-68 261.2 267 56.6
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 7.0e-65 251.5 253 57.7
Ah.02g112110 Amaranthus hybridus HOM05D006128 ORTHO05D007466 9.2e-65 251.1 250 57.6
ClCG10G011230 Citrullus lanatus HOM05D006128 ORTHO05D007466 1.0e-63 247.7 419 42.0
ECA236G3461 Erigeron canadensis HOM05D001958 ORTHO05D001971 1.7e-63 246.9 186 69.4
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 2.3e-63 246.5 255 56.5
RcHm_v2.0_Chr7g0241881 Rosa chinensis HOM05D006128 ORTHO05D007466 1.1e-62 244.2 183 68.9
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 9.5e-62 241.1 266 55.6
AUR62011838 Chenopodium quinoa HOM05D006128 ORTHO05D007466 2.8e-61 239.6 211 60.2
Eucgr.K03529 Eucalyptus grandis HOM05D006128 ORTHO05D007466 2.8e-61 239.6 192 65.6
Sc18g0005360 Simmondsia chinensis HOM05D006128 ORTHO05D007466 2.8e-61 239.6 210 61.9
AUR62024680 Chenopodium quinoa HOM05D006128 ORTHO05D007466 1.8e-60 236.9 204 61.3
Thhalv10028896m.g Eutrema salsugineum HOM05D006128 ORTHO05D007466 4.0e-60 235.7 269 54.6
Sp6g02010 Schrenkiella parvula HOM05D006128 ORTHO05D007466 3.4e-59 232.6 259 55.6
SGA_v2.0_scaffold376G50266 Striga asiatica HOM05D006128 ORTHO05D007466 9.8e-59 231.1 180 68.9
unitig_52.g16838 Utricularia gibba HOM05D006128 ORTHO05D007466 9.8e-59 231.1 267 54.3
BcaB01g02428 Brassica carinata HOM05D006128 ORTHO05D007466 1.3e-58 230.7 271 52.8
Gohir.D11G116100 Gossypium hirsutum HOM05D006128 ORTHO05D007466 8.3e-58 228.0 184 63.0
CDE11G0626 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 4.1e-57 225.7 242 55.4
A03p31200 Brassica napus HOM05D006128 ORTHO05D007466 3.9e-55 219.2 267 52.8
BraA03t12299Z Brassica rapa HOM05D006128 ORTHO05D007466 3.9e-55 219.2 267 52.8
CDE05G1506 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 1.9e-54 216.9 242 53.7
BcaC01g06774 Brassica carinata HOM05D006128 ORTHO05D007466 9.5e-54 214.5 269 49.8
C03p38040 Brassica napus HOM05D006128 ORTHO05D007466 9.5e-54 214.5 269 49.8
BolC3t16089H Brassica oleracea HOM05D006128 ORTHO05D007466 9.5e-54 214.5 269 49.8
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 6.8e-52 208.4 249 51.8
Zm00001eb345660 Zea mays HOM05D006128 ORTHO05D007466 2.2e-50 203.4 251 49.8
Os05g0156200 Oryza sativa ssp. japonica HOM05D006128 ORTHO05D007466 6.0e-48 195.3 246 49.6
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 7.8e-48 194.9 317 45.4
ATR0706G106 Amborella trichopoda HOM05D006128 ORTHO05D007466 2.3e-47 193.4 276 45.3
Lalb_Chr21g0309471 Lupinus albus HOM05D006128 ORTHO05D007466 1.2e-45 187.6 270 47.0
HPP92_016959 Vanilla planifolia HOM05D006128 ORTHO05D007466 6.2e-45 185.3 251 49.4
Zm00001eb340800 Zea mays HOM05D006128 ORTHO05D007466 9.9e-43 177.9 216 49.5
Lsat_1_v5_gn_8_166381 Lactuca sativa HOM05D001134 ORTHO05D001035 1.3e-42 177.6 236 50.8
MSTRG.18115 Avicennia marina HOM05D006128 ORTHO05D007466 4.0e-36 156.0 153 58.2
CARHR290820 Cardamine hirsuta HOM05D006128 ORTHO05D007466 4.3e-30 136.0 190 46.8
Sc18g0005490 Simmondsia chinensis HOM05D006128 ORTHO05D007466 5.6e-30 135.6 126 61.9
SHI19763 Sapria himalayana HOM05D006128 ORTHO05D007466 3.6e-29 132.9 191 44.5
Pp3c13_5550 Physcomitrium patens HOM05D006128 ORTHO05D007466 3.1e-28 129.8 207 44.4
Mapoly0184s0013 Marchantia polymorpha HOM05D006128 ORTHO05D007466 3.9e-23 112.8 214 42.5
AagrBONN_evm.TU.Sc2ySwM_228.1223 Anthoceros agrestis HOM05D006128 ORTHO05D007466 4.3e-22 109.4 201 38.8
RcHm_v2.0_Chr7g0241891 Rosa chinensis HOM05D006128 ORTHO05D007466 1.1e-20 104.8 76 68.4
A03p31210 Brassica napus HOM05D000040 ORTHO05D000267 3.5e-16 89.7 97 56.7
Pp3c3_2220 Physcomitrium patens HOM05D006128 ORTHO05D007466 2.3e-15 87.0 134 47.8
Oeu047380.1 Olea europaea HOM05D006128 ORTHO05D007466 6.7e-15 85.5 77 58.4
SHI19767 Sapria himalayana HOM05D006128 ORTHO05D007466 8.7e-15 85.1 71 63.4
SEGI_18845 Sequoiadendron giganteum HOM05D006128 ORTHO05D007466 1.5e-11 74.3 53 64.2
CARHR290830 Cardamine hirsuta HOM05D006128 ORTHO05D007466 2.9e-10 70.1 74 55.4
C03p38050 Brassica napus HOM05D006128 ORTHO05D007466 1.6e-08 64.3 50 62.0
BolC3t16090H Brassica oleracea HOM05D006128 ORTHO05D007466 2.3e-07 60.5 45 62.2
BraA03t12301Z Brassica rapa HOM05D006128 ORTHO05D007466 6.7e-07 58.9 45 62.2
CBR_g33995 Chara braunii HOM05D006128 ORTHO05D007466 8.7e-07 58.5 260 26.5


User provided reference genes

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