Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035019 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 5.0e-227 790.8 409 100.0
CSS0024143 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 3.3e-186 655.2 409 85.6
CSS0025538 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 7.6e-159 564.3 344 87.5
CSS0029870 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.3e-158 563.5 344 87.5
Actinidia05361 Actinidia chinensis HOM05D003726 ORTHO05D003520 1.7e-73 280.8 479 44.1
Dinv14505 Davidia involucrata HOM05D003726 ORTHO05D003520 8.7e-54 215.3 420 39.5
Actinidia11576 Actinidia chinensis HOM05D003726 ORTHO05D003520 3.1e-51 206.8 418 40.4
QL07p035285 Quercus lobata HOM05D003726 ORTHO05D003520 3.3e-45 186.8 419 36.8
Ciclev10011806m.g Citrus clementina HOM05D003726 ORTHO05D003520 1.1e-43 181.8 425 36.7
GSVIVG01011170001 Vitis vinifera HOM05D003726 ORTHO05D003520 2.2e-41 174.1 421 37.5
Thecc.05G014300 Theobroma cacao HOM05D003726 ORTHO05D003520 4.9e-41 172.9 425 35.3
Potri.016G117400 Populus trichocarpa HOM05D003726 ORTHO05D003520 2.4e-40 170.6 447 34.9
Haze_21015 Corylus avellana HOM05D003726 ORTHO05D003520 1.2e-39 168.3 408 35.0
Sabra16G0113500 Salix brachista HOM05D003726 ORTHO05D003520 1.6e-39 167.9 438 34.0
Duzib093G1061 Durio zibethinus HOM05D003726 ORTHO05D003520 1.0e-38 165.2 427 34.2
Manes.09G107700 Manihot esculenta HOM05D003726 ORTHO05D003520 1.0e-38 165.2 434 35.0
Cpa.g.sc11.124 Carica papaya HOM05D003726 ORTHO05D003520 1.8e-38 164.5 423 35.7
Prupe.6G278700 Prunus persica HOM05D003726 ORTHO05D003520 2.3e-38 164.1 439 34.2
Cfa017195 Carpinus fangiana HOM05D003726 ORTHO05D003520 8.7e-38 162.2 414 35.3
TAR369G0146 Trochodendron aralioides HOM05D003726 ORTHO05D003520 4.3e-37 159.8 435 34.7
MD04G1154900 Malus domestica HOM05D003726 ORTHO05D003520 1.3e-36 158.3 423 34.8
Atru.chr8.2256 Acer truncatum HOM05D003726 ORTHO05D003520 1.4e-35 154.8 412 34.7
Duzib128G0808 Durio zibethinus HOM05D003726 ORTHO05D003520 1.8e-35 154.5 419 34.4
DCAR_024016 Daucus carota HOM05D003726 ORTHO05D003520 1.3e-33 148.3 410 33.2
Oeu005176.1 Olea europaea HOM05D003726 ORTHO05D003520 1.7e-33 147.9 418 33.0
TWI53G1918 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 2.9e-33 147.1 422 32.9
CiPaw.09G210300 Carya illinoinensis HOM05D003726 ORTHO05D003520 6.5e-33 146.0 424 32.8
Nitab4.5_0000261g0020 Nicotiana tabacum HOM05D003726 ORTHO05D003520 1.1e-32 145.2 406 33.7
Cfa011708 Carpinus fangiana HOM05D003726 ORTHO05D003520 1.9e-32 144.4 433 32.3
FvH4_6g11320 Fragaria vesca HOM05D003726 ORTHO05D003520 1.9e-32 144.4 444 33.6
FAN02G2870 Fragaria x ananassa HOM05D003726 ORTHO05D003520 7.1e-32 142.5 438 32.4
Actinidia20741 Actinidia chinensis HOM05D003726 ORTHO05D003520 1.2e-31 141.7 282 43.6
FAN14G0787 Fragaria x ananassa HOM05D003726 ORTHO05D003520 2.7e-31 140.6 441 32.4
FAN09G2526 Fragaria x ananassa HOM05D003726 ORTHO05D003520 4.6e-31 139.8 423 32.2
TWI74G0063 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 7.9e-31 139.0 433 32.6
TAR623G0590 Trochodendron aralioides HOM05D003726 ORTHO05D003520 1.3e-30 138.3 428 34.3
CiPaw.13G076400 Carya illinoinensis HOM05D003726 ORTHO05D003520 3.0e-30 137.1 436 29.8
MD12G1168500 Malus domestica HOM05D003726 ORTHO05D003520 3.9e-30 136.7 432 31.9
ClCG10G022200 Citrullus lanatus HOM05D003726 ORTHO05D003520 6.7e-30 136.0 415 31.6
CsaV3_3G033690 Cucumis sativus L. HOM05D003726 ORTHO05D003520 4.3e-29 133.3 411 31.6
Nitab4.5_0002020g0040 Nicotiana tabacum HOM05D003726 ORTHO05D003520 3.7e-28 130.2 416 32.5
MELO3C009159.2 Cucumis melo HOM05D003726 ORTHO05D003520 4.8e-28 129.8 292 36.3
Nn2g13146 Nelumbo nucifera HOM05D003726 ORTHO05D003520 4.8e-28 129.8 435 31.0
COL.COLO4_14518 Corchorus olitorius HOM05D003726 ORTHO05D003520 6.2e-28 129.4 401 30.4
MSTRG.26816 Avicennia marina HOM05D003726 ORTHO05D003520 8.2e-28 129.0 410 32.4
RcHm_v2.0_Chr3g0462881 Rosa chinensis HOM05D003726 ORTHO05D003520 1.8e-27 127.9 432 31.5
Aqoxy4G02538 Aquilegia oxysepala HOM05D003726 ORTHO05D003520 4.1e-27 126.7 418 30.9
CiPaw.14G058500 Carya illinoinensis HOM05D003726 ORTHO05D003520 6.9e-27 125.9 415 29.9
Nn2g10861 Nelumbo nucifera HOM05D003726 ORTHO05D003520 9.0e-27 125.6 434 30.9
Migut.L02021 Erythranthe guttata HOM05D003726 ORTHO05D003520 1.2e-26 125.2 426 30.0
Lalb_Chr07g0193641 Lupinus albus HOM05D003726 ORTHO05D003520 2.6e-26 124.0 416 31.0
Gohir.D04G131050 Gossypium hirsutum HOM05D003726 ORTHO05D003520 3.4e-26 123.6 407 30.7
Gorai.006G183100 Gossypium raimondii HOM05D003726 ORTHO05D003520 3.4e-26 123.6 425 31.8
QL01p038574 Quercus lobata HOM05D003726 ORTHO05D003520 3.4e-26 123.6 438 29.7
Gohir.A09G165800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 4.5e-26 123.2 422 31.3
EL10Ac7g16184 Beta vulgaris HOM05D003726 ORTHO05D003520 7.6e-26 122.5 407 28.0
Potri.009G046900 Populus trichocarpa HOM05D003726 ORTHO05D003520 1.0e-25 122.1 443 30.5
Gorai.012G114900 Gossypium raimondii HOM05D003726 ORTHO05D003520 2.2e-25 120.9 407 30.5
Oeu054393.1 Olea europaea HOM05D003726 ORTHO05D003520 2.2e-25 120.9 418 29.7
Haze_24339 Corylus avellana HOM05D003726 ORTHO05D003520 2.9e-25 120.6 418 29.9
PGSC0003DMG400030244 Solanum tuberosum HOM05D003726 ORTHO05D003520 5.0e-25 119.8 399 29.3
Sed0008005 Sechium edule HOM05D003726 ORTHO05D003520 1.1e-24 118.6 397 29.2
Sabra09G0034300 Salix brachista HOM05D003726 ORTHO05D003520 1.9e-24 117.9 431 30.9
Thecc.09G299900 Theobroma cacao HOM05D003726 ORTHO05D003520 3.2e-24 117.1 446 30.3
Actinidia23884 Actinidia chinensis HOM05D003726 ORTHO05D003520 5.5e-24 116.3 417 30.2
FAN14G4204 Fragaria x ananassa HOM05D003726 ORTHO05D003520 5.5e-24 116.3 321 36.8
Gohir.D09G161366 Gossypium hirsutum HOM05D003726 ORTHO05D003520 7.2e-24 115.9 419 31.3
Solyc09g005570.3 Solanum lycopersicum HOM05D003726 ORTHO05D003520 1.6e-23 114.8 402 30.3
Sopen09g001480 Solanum pennellii HOM05D003726 ORTHO05D003520 1.6e-23 114.8 402 30.3
Cpa.g.sc112.4 Carica papaya HOM05D003726 ORTHO05D003520 2.1e-23 114.4 438 29.5
SGA_v2.0_scaffold110G31210 Striga asiatica HOM05D003726 ORTHO05D003520 2.1e-23 114.4 401 30.9
TPR.G13333 Trifolium pratense HOM05D003726 ORTHO05D003520 3.5e-23 113.6 432 30.8
CSS0031801 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.0e-22 112.1 415 30.1
Phvul.010G076500 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 1.3e-22 111.7 419 29.4
VMungo1383G2513 Vigna mungo HOM05D003726 ORTHO05D003520 1.3e-22 111.7 426 29.3
Glyma.03G056800 Glycine max HOM05D003726 ORTHO05D003520 2.3e-22 110.9 432 30.3
Lj3g0010607 Lotus japonicus HOM05D003726 ORTHO05D003520 3.9e-22 110.2 444 32.2
Phvul.008G098200 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 3.9e-22 110.2 434 30.6
Dinv28651 Davidia involucrata HOM05D003726 ORTHO05D003520 5.1e-22 109.8 424 30.0
COL.COLO4_19173 Corchorus olitorius HOM05D003726 ORTHO05D003520 8.7e-22 109.0 432 30.3
Actinidia34457 Actinidia chinensis HOM05D003726 ORTHO05D003520 1.1e-21 108.6 418 28.7
Peaxi162Scf00170g00213 Petunia axillaris HOM05D003726 ORTHO05D003520 1.1e-21 108.6 197 41.6
Duzib170G0773 Durio zibethinus HOM05D003726 ORTHO05D003520 2.5e-21 107.5 322 33.2
Peaxi162Scf79720g00003 Petunia axillaris HOM05D003726 ORTHO05D003520 3.3e-21 107.1 196 41.3
SalBow4G2563 Salvia bowleyana HOM05D003726 ORTHO05D003520 4.3e-21 106.7 410 29.8
Duzib168G1865 Durio zibethinus HOM05D003726 ORTHO05D003520 5.7e-21 106.3 438 30.8
CsaV3_1G036240 Cucumis sativus L. HOM05D003726 ORTHO05D003520 1.6e-20 104.8 385 29.4
ClCG03G000690 Citrullus lanatus HOM05D003726 ORTHO05D003520 2.2e-20 104.4 408 29.9
Sed0002259 Sechium edule HOM05D003726 ORTHO05D003520 2.2e-20 104.4 397 28.7
arahy.Tifrunner.gnm1.ann1.DIZ6KI Arachis hypogaea HOM05D003726 ORTHO05D003520 2.8e-20 104.0 428 30.6
DCAR_005887 Daucus carota HOM05D003726 ORTHO05D003520 2.8e-20 104.0 424 29.0
MBI03_g31834_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 2.8e-20 104.0 441 29.3
Prupe.6G056200 Prunus persica HOM05D003726 ORTHO05D003520 2.8e-20 104.0 389 28.5
arahy.Tifrunner.gnm1.ann1.3NQ7J1 Arachis hypogaea HOM05D003726 ORTHO05D003520 3.7e-20 103.6 428 30.6
Manes.02G118700 Manihot esculenta HOM05D003726 ORTHO05D003520 3.7e-20 103.6 436 26.6
Glyma.18G202500 Glycine max HOM05D003726 ORTHO05D003520 4.8e-20 103.2 433 30.3
Lalb_Chr18g0050991 Lupinus albus HOM05D003726 ORTHO05D003520 8.2e-20 102.4 436 29.4
Ah.08g221410 Amaranthus hybridus HOM05D003726 ORTHO05D003520 1.8e-19 101.3 395 26.3
PGR102G0699 Punica granatum HOM05D003726 ORTHO05D003520 1.8e-19 101.3 401 29.2
CSS0008670 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 2.4e-19 100.9 423 28.6
VMungo0331G0804 Vigna mungo HOM05D003726 ORTHO05D003520 3.1e-19 100.5 301 33.2
Lsat_1_v5_gn_5_149441 Lactuca sativa HOM05D003726 ORTHO05D003520 4.1e-19 100.1 131 47.3
arahy.Tifrunner.gnm1.ann1.IE2B4C Arachis hypogaea HOM05D003726 ORTHO05D003520 5.3e-19 99.8 427 28.8
CANSAT54G2733 Cannabis sativa HOM05D003726 ORTHO05D003520 5.3e-19 99.8 407 27.5
Gohir.A05G087800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 6.9e-19 99.4 426 29.1
MBI03_g32367_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 6.9e-19 99.4 435 29.4
Hma1.2p1_0962F.1_g241820 Hydrangea macrophylla HOM05D003726 ORTHO05D003520 9.0e-19 99.0 411 29.4
TWI31G1278 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 9.0e-19 99.0 411 27.7
MELO3C020542.2 Cucumis melo HOM05D003726 ORTHO05D003520 1.2e-18 98.6 383 29.8
MD11G1072700 Malus domestica HOM05D003726 ORTHO05D003520 2.0e-18 97.8 395 30.1
RcHm_v2.0_Chr5g0069911 Rosa chinensis HOM05D003726 ORTHO05D003520 3.4e-18 97.1 406 30.5
arahy.Tifrunner.gnm1.ann1.P4YYRQ Arachis hypogaea HOM05D003726 ORTHO05D003520 4.5e-18 96.7 416 29.1
Gorai.009G091100 Gossypium raimondii HOM05D003726 ORTHO05D003520 4.5e-18 96.7 432 28.5
Gohir.D05G088900 Gossypium hirsutum HOM05D003726 ORTHO05D003520 5.9e-18 96.3 427 28.6
MD03G1068300 Malus domestica HOM05D003726 ORTHO05D003520 7.7e-18 95.9 410 29.3
Glyma.07G151200 Glycine max HOM05D003726 ORTHO05D003520 1.3e-17 95.1 431 29.2
Glyma.01G120800 Glycine max HOM05D003726 ORTHO05D003520 2.9e-17 94.0 440 28.9
Glyma.02G227100 Glycine max HOM05D003726 ORTHO05D003520 2.9e-17 94.0 412 28.2
Medtr4g015650 Medicago truncatula HOM05D003726 ORTHO05D003520 5.0e-17 93.2 405 26.7
Eucgr.A00522 Eucalyptus grandis HOM05D003726 ORTHO05D003520 6.5e-17 92.8 214 34.6
Glyma.14G194200 Glycine max HOM05D003726 ORTHO05D003520 6.5e-17 92.8 425 26.6
Thhalv10016075m.g Eutrema salsugineum HOM05D013727 ORTHO05D003520 8.5e-17 92.4 446 27.1
FAN16G2238 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.1e-16 92.0 410 28.8
Sc07g0006660 Simmondsia chinensis HOM05D003726 ORTHO05D003520 1.4e-16 91.7 422 29.4
Medtr3g464300 Medicago truncatula HOM05D003726 ORTHO05D003520 2.5e-16 90.9 412 26.5
Phvul.008G260800 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 2.5e-16 90.9 425 27.5
THA.LOC104816197 Tarenaya hassleriana HOM05D013727 ORTHO05D003520 2.5e-16 90.9 432 26.6
Eucgr.B02248 Eucalyptus grandis HOM05D003726 ORTHO05D003520 3.2e-16 90.5 411 27.0
FAN25G1890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 4.2e-16 90.1 406 28.8
EL10Ac5g12551 Beta vulgaris HOM05D029928 ORTHO05D003520 1.2e-15 88.6 415 29.2
Psat7g245680 Pisum sativum HOM05D003726 ORTHO05D003520 1.2e-15 88.6 408 28.9
FAN21G3554 Fragaria x ananassa HOM05D003726 ORTHO05D003520 2.1e-15 87.8 406 28.6
AUR62030799 Chenopodium quinoa HOM05D029928 ORTHO05D003520 2.7e-15 87.4 126 42.1
PGR031G0398 Punica granatum HOM05D003726 ORTHO05D003520 2.7e-15 87.4 428 29.9
Ca_14944_v3 Cicer arietinum L. HOM05D003726 ORTHO05D003520 3.6e-15 87.0 402 27.4
CSS0008692 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 4.6e-15 86.7 67 71.6
Sed0010018 Sechium edule HOM05D003726 ORTHO05D003520 4.6e-15 86.7 277 28.2
FvH4_3g38760 Fragaria vesca HOM05D003726 ORTHO05D003520 7.9e-15 85.9 412 28.2
Atru.chr3.4198 Acer truncatum HOM05D003726 ORTHO05D003520 1.0e-14 85.5 144 42.4
AUR62020147 Chenopodium quinoa HOM05D003726 ORTHO05D003520 1.0e-14 85.5 387 28.4
Cc01_g14320 Coffea canephora HOM05D003726 ORTHO05D003520 1.8e-14 84.7 444 27.9
Rhsim13G0068300 Rhododendron simsii HOM05D003726 ORTHO05D003520 1.8e-14 84.7 413 26.4
FAN11G0812 Fragaria x ananassa HOM05D003726 ORTHO05D003520 3.9e-14 83.6 412 27.9
Glyma.11G174300 Glycine max HOM05D003726 ORTHO05D003520 3.9e-14 83.6 438 27.9
Lj6g0007419 Lotus japonicus HOM05D003726 ORTHO05D003520 3.9e-14 83.6 420 27.6
Lalb_Chr12g0207011 Lupinus albus HOM05D003726 ORTHO05D003520 3.9e-14 83.6 133 43.6
TPR.G15189 Trifolium pratense HOM05D003726 ORTHO05D003520 3.9e-14 83.6 435 25.5
Carub.0006s0045 Capsella rubella HOM05D013727 ORTHO05D003520 6.7e-14 82.8 442 26.0
AUR62001632 Chenopodium quinoa HOM05D003726 ORTHO05D003520 1.1e-13 82.0 206 32.5
Hund20990 Selenicereus undatus HOM05D003726 ORTHO05D003520 1.1e-13 82.0 423 27.9
PSO339G6116 Papaver somniferum HOM05D003726 ORTHO05D003520 1.5e-13 81.6 415 26.5
THA.LOC104810708 Tarenaya hassleriana HOM05D003726 ORTHO05D003520 1.5e-13 81.6 282 28.7
Sp6g20330 Schrenkiella parvula HOM05D011448 ORTHO05D003520 2.5e-13 80.9 139 38.8
Nitab4.5_0008578g0030 Nicotiana tabacum HOM05D003726 ORTHO05D003520 7.4e-13 79.3 410 26.1
Lj1P136T16 Lonicera japonica HOM05D003726 ORTHO05D003520 1.3e-12 78.6 294 31.6
CARHR272490 Cardamine hirsuta HOM05D011448 ORTHO05D003520 2.2e-12 77.8 132 36.4
Glyma.18G062100 Glycine max HOM05D003726 ORTHO05D003520 2.2e-12 77.8 430 27.4
Lalb_Chr04g0252221 Lupinus albus HOM05D003726 ORTHO05D003520 3.7e-12 77.0 413 26.9
LjContig00155g0026227 Lotus japonicus HOM05D003726 ORTHO05D003520 4.8e-12 76.6 417 28.1
AT5G01370 Arabidopsis thaliana HOM05D013727 ORTHO05D003520 6.3e-12 76.3 441 25.9
VMungo0647G1535 Vigna mungo HOM05D003726 ORTHO05D003520 6.3e-12 76.3 411 25.8
AL6G10750 Arabidopsis lyrata HOM05D013727 ORTHO05D003520 1.1e-11 75.5 450 25.6
Thhalv10015324m.g Eutrema salsugineum HOM05D011448 ORTHO05D003520 1.1e-11 75.5 399 28.3
Aa31LG1G23030 Aethionema arabicum HOM05D013727 ORTHO05D003520 5.3e-11 73.2 435 25.1
Rhsim01G0236900 Rhododendron simsii HOM05D003726 ORTHO05D003520 6.9e-11 72.8 415 26.0
AT5G58630 Arabidopsis thaliana HOM05D011448 ORTHO05D003520 9.1e-11 72.4 398 26.1
BolC2t06018H Brassica oleracea HOM05D013727 ORTHO05D003520 2.0e-10 71.2 441 25.6
Sp6g40680 Schrenkiella parvula HOM05D013727 ORTHO05D003520 4.5e-10 70.1 154 35.1
Hund14289 Selenicereus undatus HOM05D029928 ORTHO05D003520 5.9e-10 69.7 370 25.7
CARHR211750 Cardamine hirsuta HOM05D013727 ORTHO05D003520 7.7e-10 69.3 446 24.7
AL8G34900 Arabidopsis lyrata HOM05D011448 ORTHO05D003520 1.1e-08 65.5 186 29.0
Hund11000 Selenicereus undatus HOM05D046068 ORTHO05D003520 2.5e-08 64.3 210 33.8
arahy.Tifrunner.gnm1.ann1.71KX3G Arachis hypogaea HOM05D003726 ORTHO05D003520 5.5e-08 63.2 219 31.5
Dinv03102 Davidia involucrata HOM05D003726 ORTHO05D003520 5.5e-08 63.2 335 27.8
BcaC04g19824 Brassica carinata HOM05D011448 ORTHO05D003520 1.2e-07 62.0 402 26.4
BolC9t57921H Brassica oleracea HOM05D011448 ORTHO05D003520 1.2e-07 62.0 402 26.4
Psat5g158000 Pisum sativum HOM05D003726 ORTHO05D003520 1.2e-07 62.0 419 24.1
arahy.Tifrunner.gnm1.ann1.W084UE Arachis hypogaea HOM05D003726 ORTHO05D003520 1.6e-07 61.6 219 31.5
Hund29902 Selenicereus undatus HOM05D046068 ORTHO05D003520 1.6e-07 61.6 210 33.3
A10p15630 Brassica napus HOM05D011448 ORTHO05D003520 3.6e-07 60.5 394 25.4
arahy.Tifrunner.gnm1.ann1.142K7L Arachis hypogaea HOM05D003726 ORTHO05D003520 4.7e-07 60.1 217 30.9
Dinv01729 Davidia involucrata HOM05D003726 ORTHO05D003520 1.4e-06 58.5 251 29.5
C09p50710 Brassica napus HOM05D011448 ORTHO05D003520 1.8e-06 58.2 399 26.3


User provided reference genes

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