Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035018 Camellia sinensis var. sinensis HOM05D016735 ORTHO05D012140 4.6e-60 235.3 234 100.0
vmacro09981 Vaccinium macrocarpon HOM05D016735 ORTHO05D012140 1.2e-18 97.8 73 72.6
Actinidia07806 Actinidia chinensis HOM05D016735 ORTHO05D012140 3.4e-18 96.3 209 59.3
Rhsim09G0183500 Rhododendron simsii HOM05D016735 ORTHO05D012140 3.7e-17 92.8 74 63.5
Dinv10554 Davidia involucrata HOM05D016735 ORTHO05D012140 5.4e-16 89.0 64 71.9
MSTRG.8364 Avicennia marina HOM05D013047 ORTHO05D012140 2.3e-14 83.6 73 60.3
Gohir.A05G280100 Gossypium hirsutum HOM05D009452 ORTHO05D010466 1.8e-11 73.9 71 56.3
Gohir.D05G281900 Gossypium hirsutum HOM05D009452 ORTHO05D010466 1.2e-10 71.2 63 61.9
Gorai.009G295300 Gossypium raimondii HOM05D009452 ORTHO05D010466 1.2e-10 71.2 63 61.9
Oeu017761.1 Olea europaea HOM05D013047 ORTHO05D012140 1.5e-10 70.9 68 54.4
MBI15_g33037_MAGBIO Magnolia biondii HOM05D009452 ORTHO05D010466 3.4e-10 69.7 71 52.1
Manes.07G138900 Manihot esculenta HOM05D009452 ORTHO05D010466 7.5e-10 68.6 73 52.1
DCAR_028542 Daucus carota HOM05D013047 ORTHO05D012140 9.8e-10 68.2 71 56.3
Duzib128G1431 Durio zibethinus HOM05D009452 ORTHO05D010466 1.3e-09 67.8 73 50.7
GSVIVG01032717001 Vitis vinifera HOM05D009452 ORTHO05D010466 1.7e-09 67.4 74 50.0
Potri.019G055900 Populus trichocarpa HOM05D009452 ORTHO05D010466 3.7e-09 66.2 72 52.8
COL.COLO4_38187 Corchorus olitorius HOM05D009452 ORTHO05D010466 4.9e-09 65.9 85 48.2
Nitab4.5_0002371g0010 Nicotiana tabacum HOM05D013047 ORTHO05D012140 8.3e-09 65.1 73 50.7
TWI53G1543 Tripterygium wilfordii HOM05D009452 ORTHO05D010466 8.3e-09 65.1 70 48.6
Prupe.2G260200 Prunus persica HOM05D015621 ORTHO05D015549 2.4e-08 63.5 71 50.7
SGA_v2.0_scaffold282G46940 Striga asiatica HOM05D028832 ORTHO05D012140 2.4e-08 63.5 77 49.4
PGSC0003DMG400027978 Solanum tuberosum HOM05D013047 ORTHO05D012140 3.1e-08 63.2 72 48.6
Nitab4.5_0000263g0150 Nicotiana tabacum HOM05D013047 ORTHO05D012140 4.1e-08 62.8 72 50.0
Cpa.g.sc19.95 Carica papaya HOM05D010126 ORTHO05D010466 5.4e-08 62.4 72 45.8
Oeu024602.1 Olea europaea HOM05D013047 ORTHO05D012140 7.0e-08 62.0 68 50.0
Cc02_g05660 Coffea canephora HOM05D013047 ORTHO05D012140 9.2e-08 61.6 74 47.3
Duzib106G0033 Durio zibethinus HOM05D009452 ORTHO05D010466 9.2e-08 61.6 64 53.1
Nn2g11084 Nelumbo nucifera HOM05D025597 ORTHO05D010466 1.2e-07 61.2 54 59.3
Thecc.10G173600 Theobroma cacao HOM05D009452 ORTHO05D010466 1.2e-07 61.2 65 52.3
Haze_17329 Corylus avellana HOM05D009452 ORTHO05D010466 1.6e-07 60.8 71 50.7
Potri.013G083700 Populus trichocarpa HOM05D009452 ORTHO05D010466 1.6e-07 60.8 71 50.7
Gohir.D05G317251 Gossypium hirsutum HOM05D009452 ORTHO05D010466 4.5e-07 59.3 54 57.4
Solyc06g050880.3 Solanum lycopersicum HOM05D013047 ORTHO05D012140 5.9e-07 58.9 72 48.6
CiPaw.02G197600 Carya illinoinensis HOM05D009452 ORTHO05D015549 7.8e-07 58.5 71 46.5
Cfa001234 Carpinus fangiana HOM05D009452 ORTHO05D010466 1.0e-06 58.2 68 48.5
Aqoxy5G00462 Aquilegia oxysepala HOM05D025597 ORTHO05D010466 1.3e-06 57.8 61 47.5
Nitab4.5_0002226g0010 Nicotiana tabacum HOM05D013047 ORTHO05D012140 1.7e-06 57.4 72 48.6
Lsat_1_v5_gn_8_13420 Lactuca sativa HOM05D023735 ORTHO05D025302 2.3e-06 57.0 66 50.0
HanXRQChr08g0222521 Helianthus annuus HOM05D023735 ORTHO05D025302 3.8e-06 56.2 66 47.0
VMungo1383G3638 Vigna mungo HOM05D010487 ORTHO05D011788 3.8e-06 56.2 51 60.8
LjContig00357g0003463 Lotus japonicus HOM05D010487 ORTHO05D011788 6.6e-06 55.5 61 54.1


User provided reference genes

Program Settings