Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035012 Camellia sinensis var. sinensis HOM05D005179 ORTHO05D006225 3.8e-75 285.0 173 100.0
Hma1.2p1_0628F.1_g191965 Hydrangea macrophylla HOM05D005179 ORTHO05D006225 3.6e-25 119.0 177 57.1
Nitab4.5_0001028g0210 Nicotiana tabacum HOM05D005179 ORTHO05D006225 1.8e-21 106.7 174 35.1
Dinv11251 Davidia involucrata HOM05D005179 ORTHO05D006225 5.9e-20 101.7 143 49.7
Lj5g0012316 Lotus japonicus HOM05D005179 ORTHO05D006225 5.9e-20 101.7 166 41.0
MSTRG.21570 Avicennia marina HOM05D005179 ORTHO05D006225 1.0e-19 100.9 167 50.3
Ciclev10024447m.g Citrus clementina HOM05D005179 ORTHO05D006225 1.0e-19 100.9 146 43.2
Dinv32955 Davidia involucrata HOM05D005179 ORTHO05D006225 1.0e-19 100.9 173 54.9
Atru.chr5.1383 Acer truncatum HOM05D005179 ORTHO05D006225 1.3e-19 100.5 185 45.4
CANSAT25G0479 Cannabis sativa HOM05D005179 ORTHO05D006225 3.8e-19 99.0 175 45.1
Sc24g0004150 Simmondsia chinensis HOM05D005179 ORTHO05D006225 8.5e-19 97.8 171 52.6
Rhsim13G0023300 Rhododendron simsii HOM05D005179 ORTHO05D006225 1.5e-18 97.1 185 43.2
TWI59G1208 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 1.5e-18 97.1 169 39.6
Glyma.19G154300 Glycine max HOM05D005179 ORTHO05D006225 2.5e-18 96.3 162 46.9
Cc01_g19710 Coffea canephora HOM05D005179 ORTHO05D006225 4.2e-18 95.5 183 50.8
PGR044G1538 Punica granatum HOM05D005179 ORTHO05D006225 4.2e-18 95.5 167 50.3
Migut.D00272 Erythranthe guttata HOM05D005179 ORTHO05D006225 9.4e-18 94.4 140 57.1
Potri.014G139200 Populus trichocarpa HOM05D005179 ORTHO05D006225 9.4e-18 94.4 167 41.9
TAR636G3147 Trochodendron aralioides HOM05D005179 ORTHO05D006225 1.2e-17 94.0 171 52.6
Nitab4.5_0002386g0020 Nicotiana tabacum HOM05D005179 ORTHO05D006225 3.6e-17 92.4 58 58.6
unitig_8.g3720 Utricularia gibba HOM05D005179 ORTHO05D006225 3.6e-17 92.4 141 56.0
Oeu015958.1 Olea europaea HOM05D005179 ORTHO05D006225 4.7e-17 92.0 176 38.6
Potri.014G139100 Populus trichocarpa HOM05D005179 ORTHO05D006225 6.1e-17 91.7 166 48.2
SalBow6G3683 Salvia bowleyana HOM05D005179 ORTHO05D006225 6.1e-17 91.7 140 35.0
Phvul.001G149300 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 1.4e-16 90.5 165 45.5
Manes.05G074000 Manihot esculenta HOM05D005179 ORTHO05D006225 1.8e-16 90.1 202 43.1
MSTRG.18220 Avicennia marina HOM05D005179 ORTHO05D006225 2.3e-16 89.7 176 33.0
Potri.002G215200 Populus trichocarpa HOM05D005179 ORTHO05D006225 2.3e-16 89.7 172 36.0
Thecc.01G282700 Theobroma cacao HOM05D005179 ORTHO05D006225 2.3e-16 89.7 164 40.9
Duzib138G1054 Durio zibethinus HOM05D005179 ORTHO05D006225 3.0e-16 89.4 170 43.5
A07p26240 Brassica napus HOM05D005179 ORTHO05D006225 4.0e-16 89.0 57 63.2
BolC6t38030H Brassica oleracea HOM05D005179 ORTHO05D006225 4.0e-16 89.0 57 63.2
BraA07t30267Z Brassica rapa HOM05D005179 ORTHO05D006225 4.0e-16 89.0 57 63.2
Lalb_Chr21g0306521 Lupinus albus HOM05D005179 ORTHO05D006225 4.0e-16 89.0 176 43.8
TPR.G1598 Trifolium pratense HOM05D005179 ORTHO05D006225 4.0e-16 89.0 167 45.5
C08p37810 Brassica napus HOM05D000257 ORTHO05D009070 5.2e-16 88.6 57 63.2
BolC8t51360H Brassica oleracea HOM05D000257 ORTHO05D009070 5.2e-16 88.6 57 63.2
CARHR173410 Cardamine hirsuta HOM05D005179 ORTHO05D006225 6.8e-16 88.2 56 64.3
COL.COLO4_09131 Corchorus olitorius HOM05D005179 ORTHO05D006225 6.8e-16 88.2 163 52.1
AL5G45930 Arabidopsis lyrata HOM05D005179 ORTHO05D006225 8.8e-16 87.8 57 61.4
AT3G63095 Arabidopsis thaliana HOM05D005179 ORTHO05D006225 8.8e-16 87.8 57 61.4
CAN.G609.9 Capsicum annuum HOM05D005179 ORTHO05D006225 8.8e-16 87.8 170 48.2
VMungo0720G0860 Vigna mungo HOM05D005179 ORTHO05D006225 8.8e-16 87.8 172 33.7
Carub.0005s2976 Capsella rubella HOM05D005179 ORTHO05D006225 1.2e-15 87.4 56 62.5
Lj1g0021337 Lotus japonicus HOM05D005179 ORTHO05D006225 1.2e-15 87.4 171 51.5
Ah.08g213000 Amaranthus hybridus HOM05D005179 ORTHO05D006225 1.5e-15 87.0 189 36.0
A04p00290 Brassica napus HOM05D005179 ORTHO05D006225 1.5e-15 87.0 56 62.5
C04p30120 Brassica napus HOM05D005179 ORTHO05D006225 1.5e-15 87.0 56 62.5
BolC4t24544H Brassica oleracea HOM05D005179 ORTHO05D006225 1.5e-15 87.0 56 62.5
BraA04t15748Z Brassica rapa HOM05D005179 ORTHO05D006225 1.5e-15 87.0 56 62.5
Ca_08572_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 1.5e-15 87.0 138 42.0
SalBow4G1980 Salvia bowleyana HOM05D005179 ORTHO05D006225 1.5e-15 87.0 175 49.1
A09p54910 Brassica napus HOM05D000257 ORTHO05D009070 2.0e-15 86.7 57 61.4
BraA09t40901Z Brassica rapa HOM05D000257 ORTHO05D009070 2.0e-15 86.7 57 61.4
Ah.15g091740 Amaranthus hybridus HOM05D005179 ORTHO05D006225 2.6e-15 86.3 181 39.8
Gorai.007G135300 Gossypium raimondii HOM05D005179 ORTHO05D006225 3.4e-15 85.9 161 54.0
Lsat_1_v5_gn_1_29921 Lactuca sativa HOM05D005179 ORTHO05D006225 4.4e-15 85.5 186 47.3
Sed0008870 Sechium edule HOM05D005179 ORTHO05D006225 4.4e-15 85.5 159 37.1
VMungo1383G3409 Vigna mungo HOM05D005179 ORTHO05D006225 4.4e-15 85.5 162 51.2
Eucgr.K03387 Eucalyptus grandis HOM05D005179 ORTHO05D006225 5.7e-15 85.1 144 50.0
Gohir.A11G121400 Gossypium hirsutum HOM05D005179 ORTHO05D006225 5.7e-15 85.1 161 51.6
DCAR_018411 Daucus carota HOM05D005179 ORTHO05D006225 7.5e-15 84.7 176 47.2
Medtr1g032050 Medicago truncatula HOM05D005179 ORTHO05D006225 7.5e-15 84.7 169 39.6
Medtr1g032400 Medicago truncatula HOM05D005179 ORTHO05D006225 7.5e-15 84.7 169 39.6
ECA247G2094 Erigeron canadensis HOM05D005179 ORTHO05D006225 9.8e-15 84.3 58 51.7
Glyma.03G151700 Glycine max HOM05D005179 ORTHO05D006225 9.8e-15 84.3 158 44.3
Manes.01G209300 Manihot esculenta HOM05D005179 ORTHO05D006225 9.8e-15 84.3 186 48.4
DCAR_002746 Daucus carota HOM05D005179 ORTHO05D006225 1.3e-14 84.0 172 34.3
Phvul.007G170000 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 1.3e-14 84.0 176 31.2
Solyc09g064900.1 Solanum lycopersicum HOM05D005179 ORTHO05D006225 1.7e-14 83.6 172 42.4
Psat6g061040 Pisum sativum HOM05D005179 ORTHO05D006225 2.2e-14 83.2 143 42.0
Gohir.D11G126500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.8e-14 82.8 161 53.4
Sabra02G0167400 Salix brachista HOM05D005179 ORTHO05D006225 2.8e-14 82.8 167 34.1
Sabra14G0104900 Salix brachista HOM05D005179 ORTHO05D006225 2.8e-14 82.8 169 45.6
THA.LOC104802228 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 2.8e-14 82.8 175 46.9
C06p28620 Brassica napus HOM05D005179 ORTHO05D006225 4.8e-14 82.0 215 43.7
SGA_v2.0_scaffold80G25940 Striga asiatica HOM05D005179 ORTHO05D006225 4.8e-14 82.0 137 35.0
Migut.N02158 Erythranthe guttata HOM05D005179 ORTHO05D006225 6.3e-14 81.6 140 53.6
arahy.Tifrunner.gnm1.ann1.YN028F Arachis hypogaea HOM05D000257 ORTHO05D009070 8.3e-14 81.3 183 43.7
PGSC0003DMG400020123 Solanum tuberosum HOM05D005179 ORTHO05D006225 8.3e-14 81.3 138 47.1
ClCG09G006920 Citrullus lanatus HOM05D000257 ORTHO05D009070 1.1e-13 80.9 157 51.0
CsaV3_7G028640 Cucumis sativus L. HOM05D005179 ORTHO05D006225 1.1e-13 80.9 173 35.8
Sc05g0004870 Simmondsia chinensis HOM05D005179 ORTHO05D006225 1.4e-13 80.5 56 53.6
MELO3C015854.2 Cucumis melo HOM05D005179 ORTHO05D006225 1.8e-13 80.1 161 36.6
ECA236G2709 Erigeron canadensis HOM05D005179 ORTHO05D006225 2.4e-13 79.7 61 52.5
Potri.004G022700 Populus trichocarpa HOM05D005179 ORTHO05D006225 2.4e-13 79.7 169 31.4
TWI59G0379 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 3.1e-13 79.3 206 43.2
Lalb_Chr25g0290231 Lupinus albus HOM05D005179 ORTHO05D006225 4.1e-13 79.0 180 46.7
Sopen02g023170 Solanum pennellii HOM05D005179 ORTHO05D006225 4.1e-13 79.0 170 30.6
SGA_v2.0_scaffold11G05800 Striga asiatica HOM05D005179 ORTHO05D006225 4.1e-13 79.0 171 31.0
arahy.Tifrunner.gnm1.ann1.AZF37F Arachis hypogaea HOM05D000257 ORTHO05D009070 5.4e-13 78.6 183 43.2
PSO832G0665 Papaver somniferum HOM05D005179 ORTHO05D006225 7.0e-13 78.2 153 51.0
HanXRQChr15g0466391 Helianthus annuus HOM05D005179 ORTHO05D006225 9.1e-13 77.8 56 48.2
GSVIVG01011106001 Vitis vinifera HOM05D005179 ORTHO05D006225 9.1e-13 77.8 57 54.4
Medtr7g094650 Medicago truncatula HOM05D005179 ORTHO05D006225 2.0e-12 76.6 163 45.4
Sed0008634 Sechium edule HOM05D005179 ORTHO05D006225 2.0e-12 76.6 161 33.5
THA.LOC104817549 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 2.7e-12 76.3 162 50.6
Rhsim01G0275800 Rhododendron simsii HOM05D000756 ORTHO05D000604 3.5e-12 75.9 160 43.1
Aa31LG10G16940 Aethionema arabicum HOM05D005179 ORTHO05D006225 4.5e-12 75.5 160 50.6
Lalb_Chr01g0020211 Lupinus albus HOM05D005179 ORTHO05D006225 4.5e-12 75.5 167 44.9
PSO210G7214 Papaver somniferum HOM05D005179 ORTHO05D006225 7.7e-12 74.7 163 48.5
Psat3g065120 Pisum sativum HOM05D005179 ORTHO05D006225 7.7e-12 74.7 165 49.7
Zm00001eb017420 Zea mays HOM05D005179 ORTHO05D006225 1.0e-11 74.3 55 54.5
Gorai.004G082400 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.3e-11 73.9 171 52.0
Oeu028081.1 Olea europaea HOM05D005179 ORTHO05D006225 1.3e-11 73.9 56 51.8
Actinidia21103 Actinidia chinensis HOM05D000756 ORTHO05D000604 1.7e-11 73.6 55 50.9
Cpa.g.sc64.166 Carica papaya HOM05D005179 ORTHO05D006225 1.7e-11 73.6 168 41.1
Glyma.10G025200 Glycine max HOM05D005179 ORTHO05D006225 1.7e-11 73.6 50 52.0
Glyma.02G148700 Glycine max HOM05D005179 ORTHO05D006225 2.2e-11 73.2 50 52.0
CiPaw.07G093600 Carya illinoinensis HOM05D005179 ORTHO05D006225 2.9e-11 72.8 164 43.3
CiPaw.08G103900 Carya illinoinensis HOM05D005179 ORTHO05D006225 2.9e-11 72.8 173 42.2
Ca_09769_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 2.9e-11 72.8 167 41.9
ClCG07G000210 Citrullus lanatus HOM05D005179 ORTHO05D006225 2.9e-11 72.8 59 47.5
Os07g0655800 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 5.0e-11 72.0 49 59.2
Zm00001eb329500 Zea mays HOM05D005179 ORTHO05D006225 5.0e-11 72.0 49 59.2
Sopen09g026600 Solanum pennellii HOM05D005179 ORTHO05D006225 6.5e-11 71.6 172 41.3
Gohir.D08G077500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.1e-10 70.9 172 44.8
Prupe.8G243700 Prunus persica HOM05D005179 ORTHO05D006225 1.1e-10 70.9 167 49.1
Zm00001eb394420 Zea mays HOM05D005179 ORTHO05D006225 1.1e-10 70.9 55 50.9
MD03G1268100 Malus domestica HOM05D005179 ORTHO05D006225 1.5e-10 70.5 146 47.9
Aqoxy5G00531 Aquilegia oxysepala HOM05D001530 ORTHO05D003676 1.9e-10 70.1 55 52.7
Os03g0357500 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 1.9e-10 70.1 55 49.1
SGA_v2.0_scaffold258G45766 Striga asiatica HOM05D005179 ORTHO05D006225 1.9e-10 70.1 178 37.6
Aqoxy2G03259 Aquilegia oxysepala HOM05D005179 ORTHO05D006225 2.5e-10 69.7 170 48.8
Gohir.A12G005800 Gossypium hirsutum HOM05D005179 ORTHO05D006225 4.2e-10 68.9 139 32.4
Gohir.D12G005300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 4.2e-10 68.9 139 32.4
Gorai.008G005200 Gossypium raimondii HOM05D005179 ORTHO05D006225 4.2e-10 68.9 139 32.4
Gorai.009G014800 Gossypium raimondii HOM05D005179 ORTHO05D006225 4.2e-10 68.9 139 32.4
vmacro14931 Vaccinium macrocarpon HOM05D001530 ORTHO05D003676 4.2e-10 68.9 139 33.1
Nn1g02158 Nelumbo nucifera HOM05D005179 ORTHO05D006225 7.2e-10 68.2 161 40.4
Haze_04736 Corylus avellana HOM05D005179 ORTHO05D006225 9.4e-10 67.8 176 41.5
Manes.01G209200 Manihot esculenta HOM05D005179 ORTHO05D006225 9.4e-10 67.8 56 50.0
Sed0002169 Sechium edule HOM05D005179 ORTHO05D006225 1.6e-09 67.0 176 47.2
Gohir.A08G069300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 8.0e-09 64.7 166 47.0
RcHm_v2.0_Chr6g0291441 Rosa chinensis HOM05D005179 ORTHO05D006225 8.0e-09 64.7 197 38.6
FvH4_2g23841 Fragaria vesca HOM05D005179 ORTHO05D006225 1.0e-08 64.3 51 45.1
FAN24G3244 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.0e-08 64.3 51 45.1
FAN15G0349 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.4e-08 63.9 51 45.1
FAN15G1538 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.4e-08 63.9 51 45.1
Manes.05G074200 Manihot esculenta HOM05D005179 ORTHO05D006225 1.4e-08 63.9 170 32.4
Gohir.D08G077600 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.8e-08 63.5 162 34.0
PSO210G2426 Papaver somniferum HOM05D005179 ORTHO05D006225 1.8e-08 63.5 54 42.6
Gohir.A08G069200 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.3e-08 63.2 48 52.1
MD11G1289000 Malus domestica HOM05D000257 ORTHO05D009070 2.3e-08 63.2 155 46.5
FAN27G1844 Fragaria x ananassa HOM05D005179 ORTHO05D006225 3.0e-08 62.8 51 43.1
PSO447G0321 Papaver somniferum HOM05D005179 ORTHO05D006225 3.0e-08 62.8 51 43.1
FAN20G2888 Fragaria x ananassa HOM05D005179 ORTHO05D006225 4.0e-08 62.4 165 47.3
ATR0626G310 Amborella trichopoda HOM05D005179 ORTHO05D006225 5.2e-08 62.0 164 45.7
Nn4g26188 Nelumbo nucifera HOM05D005179 ORTHO05D006225 8.8e-08 61.2 194 41.2
Actinidia00740 Actinidia chinensis HOM05D005179 ORTHO05D006225 1.5e-07 60.5 44 52.3
Gorai.004G082500 Gossypium raimondii HOM05D005179 ORTHO05D006225 7.5e-07 58.2 162 29.6
Cfa006114 Carpinus fangiana HOM05D005179 ORTHO05D006225 3.7e-06 55.8 175 39.4


User provided reference genes

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