Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035006 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 1.6e-61 239.6 148 100.0
Haze_14313 Corylus avellana HOM05D006436 ORTHO05D008011 9.8e-40 167.2 150 58.7
Manes.02G134600 Manihot esculenta HOM05D006436 ORTHO05D008011 4.9e-39 164.9 129 62.8
QL08p017466 Quercus lobata HOM05D006436 ORTHO05D008011 1.4e-38 163.3 127 81.1
FAN08G3413 Fragaria x ananassa HOM05D006436 ORTHO05D008011 3.1e-38 162.2 127 63.0
ECA234G4304 Erigeron canadensis HOM05D006436 ORTHO05D008011 7.0e-38 161.0 128 83.6
CSS0031788 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 1.6e-37 159.8 128 86.7
Eucgr.J01642 Eucalyptus grandis HOM05D006436 ORTHO05D008011 8.6e-36 154.1 123 81.3
CDE11G1230 Ceratophyllum demersum HOM05D006436 ORTHO05D008011 1.9e-35 152.9 123 79.7
Nn4g25693 Nelumbo nucifera HOM05D006436 ORTHO05D008011 5.6e-35 151.4 120 64.2
arahy.Tifrunner.gnm1.ann1.7TMM1B Arachis hypogaea HOM05D006436 ORTHO05D008011 9.5e-35 150.6 126 78.6
FAN18G0548 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.2e-34 150.2 150 52.0
TAR365G0111 Trochodendron aralioides HOM05D006436 ORTHO05D008011 1.6e-34 149.8 123 83.7
Ciclev10022503m.g Citrus clementina HOM05D006436 ORTHO05D008011 2.8e-34 149.1 128 81.2
MBI18_g05914_MAGBIO Magnolia biondii HOM05D006436 ORTHO05D008011 3.6e-34 148.7 123 82.9
TWI77G0906 Tripterygium wilfordii HOM05D006436 ORTHO05D008011 6.1e-34 147.9 126 81.0
MD09G1253300 Malus domestica HOM05D006436 ORTHO05D008011 1.0e-33 147.1 128 78.9
Ca_05765_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 1.4e-33 146.7 123 79.7
arahy.Tifrunner.gnm1.ann1.RB24L7 Arachis hypogaea HOM05D006436 ORTHO05D008011 1.8e-33 146.4 126 78.6
PGSC0003DMG400023565 Solanum tuberosum HOM05D006436 ORTHO05D008011 2.3e-33 146.0 115 62.6
arahy.Tifrunner.gnm1.ann1.QIUU4Q Arachis hypogaea HOM05D006436 ORTHO05D008011 3.0e-33 145.6 126 79.4
Ca_18506_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 3.0e-33 145.6 123 78.9
Cc07_g12850 Coffea canephora HOM05D006436 ORTHO05D008011 4.0e-33 145.2 125 79.2
Lj4C253G7 Lonicera japonica HOM05D006436 ORTHO05D008011 4.0e-33 145.2 128 78.9
Atru.chr1.2057 Acer truncatum HOM05D006436 ORTHO05D008011 5.2e-33 144.8 128 79.7
DCAR_006063 Daucus carota HOM05D006436 ORTHO05D008011 5.2e-33 144.8 123 78.9
HanXRQChr10g0309911 Helianthus annuus HOM05D006436 ORTHO05D008011 5.2e-33 144.8 128 77.3
Psat2g043120 Pisum sativum HOM05D006436 ORTHO05D008011 8.9e-33 144.1 123 79.7
RcHm_v2.0_Chr7g0218931 Rosa chinensis HOM05D006436 ORTHO05D008011 1.5e-32 143.3 127 76.4
Cc00_g04020 Coffea canephora HOM05D006436 ORTHO05D008011 2.0e-32 142.9 116 62.1
Phvul.008G233200 Phaseolus vulgaris HOM05D006436 ORTHO05D008011 2.6e-32 142.5 128 77.3
Aqoxy7G01157 Aquilegia oxysepala HOM05D006436 ORTHO05D008011 3.4e-32 142.1 125 75.2
BraA03t11880Z Brassica rapa HOM05D006436 ORTHO05D008011 4.4e-32 141.7 125 57.6
Cfa007759 Carpinus fangiana HOM05D006436 ORTHO05D008011 4.4e-32 141.7 127 59.1
Thecc.09G311900 Theobroma cacao HOM05D006436 ORTHO05D008011 4.4e-32 141.7 128 77.3
Hma1.2p1_0158F.1_g069740 Hydrangea macrophylla HOM05D006436 ORTHO05D008011 5.8e-32 141.4 128 78.1
THA.LOC104823829 Tarenaya hassleriana HOM05D006436 ORTHO05D008011 5.8e-32 141.4 126 77.8
arahy.Tifrunner.gnm1.ann1.8KE236 Arachis hypogaea HOM05D006436 ORTHO05D008011 7.5e-32 141.0 117 61.5
C03p31970 Brassica napus HOM05D006436 ORTHO05D008011 1.7e-31 139.8 125 56.8
BolC3t15539H Brassica oleracea HOM05D006436 ORTHO05D008011 1.7e-31 139.8 125 56.8
AT5G37290 Arabidopsis thaliana HOM05D006436 ORTHO05D008011 2.2e-31 139.4 125 76.8
Peaxi162Scf00442g00063 Petunia axillaris HOM05D006436 ORTHO05D008011 2.2e-31 139.4 125 76.0
LjContig00141g0009494 Lotus japonicus HOM05D006436 ORTHO05D008011 2.9e-31 139.0 123 75.6
Nitab4.5_0005193g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 2.9e-31 139.0 123 78.0
CiPaw.03G076800 Carya illinoinensis HOM05D006436 ORTHO05D008011 3.7e-31 138.7 127 78.0
Glyma.14G210900 Glycine max HOM05D006436 ORTHO05D008011 3.7e-31 138.7 126 77.0
Prupe.3G143200 Prunus persica HOM05D006436 ORTHO05D008011 4.9e-31 138.3 125 77.6
FvH4_5g27560 Fragaria vesca HOM05D006436 ORTHO05D008011 6.4e-31 137.9 127 74.8
arahy.Tifrunner.gnm1.ann1.1G92VG Arachis hypogaea HOM05D006436 ORTHO05D008011 8.3e-31 137.5 126 76.2
Dinv19074 Davidia involucrata HOM05D006436 ORTHO05D008011 1.4e-30 136.7 128 77.3
Thhalv10028339m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 1.4e-30 136.7 119 58.0
Potri.001G225300 Populus trichocarpa HOM05D006436 ORTHO05D008011 1.4e-30 136.7 128 75.8
Solyc04g014610.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 2.4e-30 136.0 125 76.0
Sopen04g006750 Solanum pennellii HOM05D006436 ORTHO05D008011 2.4e-30 136.0 125 76.0
Lalb_Chr16g0392121 Lupinus albus HOM05D006436 ORTHO05D008011 3.2e-30 135.6 126 73.8
Rhsim11G0087100 Rhododendron simsii HOM05D006436 ORTHO05D008011 3.2e-30 135.6 122 79.5
ATR0706G244 Amborella trichopoda HOM05D006436 ORTHO05D008011 4.1e-30 135.2 124 76.6
PGR042G2272 Punica granatum HOM05D006436 ORTHO05D008011 4.1e-30 135.2 123 78.0
Sopen04g027290 Solanum pennellii HOM05D006436 ORTHO05D008011 4.1e-30 135.2 125 75.2
PGSC0003DMG400024110 Solanum tuberosum HOM05D006436 ORTHO05D008011 4.1e-30 135.2 125 75.2
SGA_v2.0_scaffold24G10269 Striga asiatica HOM05D006436 ORTHO05D008011 4.1e-30 135.2 121 76.0
Gohir.A07G101500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 5.4e-30 134.8 123 76.4
Gohir.D07G105500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 5.4e-30 134.8 123 76.4
Gorai.001G113600 Gossypium raimondii HOM05D006436 ORTHO05D008011 5.4e-30 134.8 123 76.4
CAN.G268.8 Capsicum annuum HOM05D006436 ORTHO05D008011 9.2e-30 134.0 125 74.4
Nitab4.5_0012165g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 9.2e-30 134.0 123 76.4
ClCG01G008580 Citrullus lanatus HOM05D006436 ORTHO05D008011 1.6e-29 133.3 128 75.0
Solyc04g071330.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 1.6e-29 133.3 125 74.4
VMungo0647G0400 Vigna mungo HOM05D006436 ORTHO05D008011 1.6e-29 133.3 128 73.4
Medtr5g077040 Medicago truncatula HOM05D006436 ORTHO05D008011 2.0e-29 132.9 126 73.0
FAN18G1736 Fragaria x ananassa HOM05D006436 ORTHO05D008011 3.5e-29 132.1 123 74.8
Oeu012529.1 Olea europaea HOM05D006436 ORTHO05D008011 3.5e-29 132.1 125 75.2
Carub.0007s3243 Capsella rubella HOM05D006436 ORTHO05D008011 6.0e-29 131.3 125 75.2
GSVIVG01035239001 Vitis vinifera HOM05D006436 ORTHO05D008011 1.3e-28 130.2 125 73.6
Cpa.g.sc178.16 Carica papaya HOM05D006436 ORTHO05D008011 1.7e-28 129.8 123 75.6
Carub.0007s3240 Capsella rubella HOM05D006436 ORTHO05D008011 3.0e-28 129.0 125 74.4
Sabra16G0133900 Salix brachista HOM05D006436 ORTHO05D008011 3.9e-28 128.6 201 50.7
FvH4_5g26310 Fragaria vesca HOM05D006436 ORTHO05D008011 5.0e-28 128.3 128 51.6
Sc15g0000210 Simmondsia chinensis HOM05D006436 ORTHO05D008011 5.0e-28 128.3 124 53.2
Os11g0546200 Oryza sativa ssp. japonica HOM05D006436 ORTHO05D008011 8.6e-28 127.5 124 71.0
HPP92_004857 Vanilla planifolia HOM05D006436 ORTHO05D008011 1.5e-27 126.7 123 74.0
Lsat_1_v5_gn_5_79100 Lactuca sativa HOM05D006436 ORTHO05D008011 1.9e-27 126.3 125 73.6
Sed0003659 Sechium edule HOM05D006436 ORTHO05D008011 3.3e-27 125.6 128 72.7
vmacro01486 Vaccinium macrocarpon HOM05D006436 ORTHO05D008011 4.3e-27 125.2 123 74.8
CARHR215800 Cardamine hirsuta HOM05D006436 ORTHO05D008011 5.6e-27 124.8 125 72.8
Zm00001eb188680 Zea mays HOM05D006436 ORTHO05D008011 7.3e-27 124.4 124 70.2
MELO3C025074.2 Cucumis melo HOM05D006436 ORTHO05D008011 1.6e-26 123.2 128 72.7
Oeu039710.1 Olea europaea HOM05D006436 ORTHO05D008011 2.1e-26 122.9 125 73.6
Thhalv10027956m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 3.6e-26 122.1 125 71.2
CsaV3_5G020600 Cucumis sativus L. HOM05D006436 ORTHO05D008011 4.7e-26 121.7 128 71.1
Sp1g30670 Schrenkiella parvula HOM05D006436 ORTHO05D008011 4.7e-26 121.7 125 72.0
BcaB03g13643 Brassica carinata HOM05D006436 ORTHO05D008011 4.0e-25 118.6 125 70.4
SMO347G0032 Selaginella moellendorffii HOM05D006436 ORTHO05D008011 5.2e-25 118.2 123 46.3
Hund24464 Selenicereus undatus HOM05D006436 ORTHO05D008011 5.2e-25 118.2 124 49.2
AL7G45650 Arabidopsis lyrata HOM05D006436 ORTHO05D008011 8.9e-25 117.5 125 71.2
CBR_g12236 Chara braunii HOM05D006436 ORTHO05D008011 1.2e-24 117.1 118 48.3
BcaC01g04932 Brassica carinata HOM05D006436 ORTHO05D008011 2.0e-24 116.3 124 70.2
COL.COLO4_18608 Corchorus olitorius HOM05D006436 ORTHO05D008011 2.6e-24 115.9 110 77.3
PSO063G3804 Papaver somniferum HOM05D006436 ORTHO05D008011 4.4e-24 115.2 122 71.3
CANSAT80G1957 Cannabis sativa HOM05D006436 ORTHO05D008011 1.1e-22 110.5 123 68.3
unitig_61.g26181 Utricularia gibba HOM05D006436 ORTHO05D008011 1.1e-22 110.5 143 44.1
FAN13G2473 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.4e-22 110.2 127 47.2
MSTRG.12143 Avicennia marina HOM05D006436 ORTHO05D008011 3.2e-22 109.0 123 69.1
Migut.A01047 Erythranthe guttata HOM05D006436 ORTHO05D008011 5.4e-22 108.2 125 65.6
SEGI_01802 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 1.2e-21 107.1 100 50.0
Thecc.05G304200 Theobroma cacao HOM05D006436 ORTHO05D008011 1.6e-21 106.7 100 57.0
Mapoly0028s0068 Marchantia polymorpha HOM05D006436 ORTHO05D008011 2.7e-21 105.9 124 46.0
Aa31LG5G11620 Aethionema arabicum HOM05D006436 ORTHO05D008011 6.2e-18 94.7 125 64.0
CSS0025543 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 6.2e-18 94.7 104 51.9
EL10Ac5g11211 Beta vulgaris HOM05D006436 ORTHO05D008011 1.7e-15 86.7 125 61.6
Dinv28234 Davidia involucrata HOM05D006436 ORTHO05D008011 1.7e-15 86.7 94 75.5
CsaV3_1G031100 Cucumis sativus L. HOM05D006436 ORTHO05D008011 6.4e-15 84.7 59 71.2
SalBow6G7138 Salvia bowleyana HOM05D006436 ORTHO05D008011 6.4e-15 84.7 125 60.0
Duzib168G0581 Durio zibethinus HOM05D006436 ORTHO05D008011 9.2e-14 80.9 42 81.0
AUR62028451 Chenopodium quinoa HOM05D003339 ORTHO05D003847 4.6e-13 78.6 123 58.5
Ah.14g085550 Amaranthus hybridus HOM05D000477 ORTHO05D000338 2.3e-12 76.3 115 60.0
AUR62026125 Chenopodium quinoa HOM05D003339 ORTHO05D003847 5.6e-11 71.6 102 63.7
AUR62026126 Chenopodium quinoa HOM05D006436 ORTHO05D008011 5.6e-11 71.6 102 63.7
Nitab4.5_0000574g0240 Nicotiana tabacum HOM05D006436 ORTHO05D008011 6.2e-10 68.2 33 84.8
RcHm_v2.0_Chr4g0394581 Rosa chinensis HOM05D004344 ORTHO05D006026 1.4e-09 67.0 51 64.7
AUR62028452 Chenopodium quinoa HOM05D006436 ORTHO05D008011 3.1e-09 65.9 37 75.7
AagrBONN_evm.TU.Sc2ySwM_368.3316 Anthoceros agrestis HOM05D006436 ORTHO05D008011 4.0e-09 65.5 87 35.6
Haze_10727 Corylus avellana HOM05D006436 ORTHO05D008011 2.9e-07 59.3 34 70.6
SEGI_00674 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 1.4e-06 57.0 51 47.1


User provided reference genes

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