Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 8.0e-305 1049.7 548 100.0
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 2.4e-277 958.4 517 97.3
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 9.0e-248 860.1 592 75.3
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 5.5e-237 824.3 592 72.1
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 9.6e-234 813.5 546 75.6
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 2.2e-230 802.4 591 71.6
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 4.2e-229 798.1 593 70.3
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 3.1e-224 781.9 588 69.6
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 5.3e-224 781.2 613 68.0
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 7.2e-221 770.8 585 68.7
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 1.1e-216 756.9 589 66.9
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 1.4e-216 756.5 581 67.5
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 6.1e-212 741.1 585 67.5
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 1.4e-211 740.0 588 65.5
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 1.8e-211 739.6 613 65.3
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 2.0e-210 736.1 597 65.2
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 7.0e-208 727.6 587 64.9
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 9.1e-208 727.2 591 65.1
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 1.5e-207 726.5 595 64.0
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 1.5e-207 726.5 588 65.1
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 8.5e-206 720.7 584 65.9
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 1.1e-205 720.3 587 64.4
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 4.2e-205 718.4 594 63.8
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 4.2e-205 718.4 594 63.8
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 1.6e-204 716.5 592 62.5
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 1.8e-203 713.0 515 70.9
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 3.0e-203 712.2 577 64.5
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 1.1e-202 710.3 515 70.1
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 2.0e-202 709.5 593 63.1
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 1.7e-201 706.4 582 64.3
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 2.8e-201 705.7 590 65.1
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 4.8e-201 704.9 585 61.7
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 1.4e-200 703.4 595 62.9
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 3.1e-200 702.2 587 62.7
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 4.1e-200 701.8 515 69.5
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 9.1e-200 700.7 588 62.2
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 6.5e-198 694.5 584 62.5
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 1.9e-197 693.0 591 61.6
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 6.1e-196 688.0 593 61.9
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.0e-195 687.2 523 67.7
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 1.8e-195 686.4 580 63.4
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 3.0e-195 685.6 590 64.2
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 3.0e-195 685.6 590 62.9
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 6.8e-195 684.5 591 61.1
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 8.8e-195 684.1 590 64.2
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 8.8e-195 684.1 589 61.8
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 1.5e-194 683.3 590 63.2
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 7.5e-194 681.0 585 61.7
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 1.3e-193 680.2 588 61.6
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 1.3e-193 680.2 595 60.5
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 2.8e-193 679.1 590 63.9
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 6.3e-193 677.9 658 57.0
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 8.3e-193 677.6 592 60.0
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 1.0e-190 670.6 785 50.3
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 2.2e-190 669.5 592 59.6
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 2.9e-190 669.1 594 60.9
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 5.0e-190 668.3 589 63.3
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 5.0e-190 668.3 590 58.8
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 8.5e-190 667.5 585 60.2
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 1.5e-189 666.8 587 60.5
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 1.9e-189 666.4 584 59.9
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 1.2e-188 663.7 576 60.9
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 2.1e-188 662.9 589 58.4
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 3.0e-187 659.1 581 59.9
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 4.0e-187 658.7 576 59.4
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 5.2e-187 658.3 589 57.9
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 1.3e-185 653.7 570 62.3
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 2.8e-185 652.5 589 57.2
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 4.9e-185 651.7 587 57.2
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 6.3e-185 651.4 592 56.9
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 1.4e-184 650.2 602 56.0
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 2.4e-184 649.4 587 57.1
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 2.4e-184 649.4 588 57.3
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 5.4e-184 648.3 590 56.6
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 5.4e-184 648.3 583 59.0
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 7.0e-184 647.9 593 56.7
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 9.1e-184 647.5 607 56.8
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 5.0e-182 641.7 579 57.2
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 1.5e-181 640.2 590 55.8
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 2.5e-181 639.4 594 56.9
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 6.1e-180 634.8 596 57.2
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 6.8e-179 631.3 577 56.7
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 1.5e-178 630.2 578 56.6
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.4e-176 623.6 353 87.5
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 8.6e-174 614.4 583 57.8
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 7.3e-173 611.3 586 56.7
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 1.6e-172 610.1 518 59.1
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 3.1e-171 605.9 543 58.4
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 3.7e-169 599.0 611 55.0
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 1.3e-166 590.5 485 62.3
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 1.3e-158 563.9 577 53.0
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 2.8e-156 556.2 518 56.0
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 1.4e-155 553.9 593 50.8
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 2.6e-154 549.7 472 61.9
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 2.9e-153 546.2 568 53.3
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 1.9e-152 543.5 618 49.7
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 4.4e-146 522.3 504 53.0
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 1.2e-130 471.1 286 79.4
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 9.6e-117 424.9 521 44.5
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 1.6e-116 424.1 498 44.8
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 2.1e-116 423.7 303 70.6
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 5.0e-113 412.5 445 50.3
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 2.8e-108 396.7 517 42.4
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 2.2e-105 387.1 360 60.3
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 2.9e-105 386.7 527 41.2
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 3.9e-102 376.3 375 53.3
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 1.0e-86 325.1 213 78.4
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 5.3e-83 312.8 211 74.9
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 1.5e-69 268.1 345 41.4
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 1.7e-68 264.6 177 76.8
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.6e-66 258.1 186 72.6
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 1.1e-64 251.9 278 50.4
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 2.9e-60 237.3 359 35.7
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.5e-56 224.9 271 42.4
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 4.1e-51 206.8 120 86.7
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 5.2e-46 189.9 109 85.3
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 3.3e-40 170.6 123 64.2
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 3.6e-39 167.2 103 78.6
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 1.3e-36 158.7 125 65.6
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 6.4e-28 129.8 130 54.6
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.1e-27 129.0 219 37.4
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 4.2e-27 127.1 98 59.2
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 3.5e-26 124.0 71 81.7
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 9.6e-24 115.9 124 46.0
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 9.0e-22 109.4 358 25.4
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 1.2e-21 109.0 216 35.2
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 3.4e-21 107.5 174 37.4
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 9.3e-19 99.4 55 81.8
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 6.0e-18 96.7 109 43.1
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 1.1e-16 92.4 109 48.6
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 3.3e-16 90.9 110 45.5
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 1.6e-15 88.6 58 65.5
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 1.6e-15 88.6 80 52.5
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 8.1e-15 86.3 83 49.4
Lsat_1_v5_gn_8_119321 Lactuca sativa HOM05D005072 ORTHO05D006209 1.8e-14 85.1 61 62.3
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 2.2e-12 78.2 58 70.7
Lsat_1_v5_gn_4_56401 Lactuca sativa HOM05D005072 ORTHO05D006209 6.4e-12 76.6 55 61.8
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 4.2e-11 73.9 219 25.1
Glyma.09G128251 Glycine max HOM05D005072 ORTHO05D006209 3.5e-10 70.9 59 62.7
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 6.0e-10 70.1 138 35.5
Oeu032057.1 Olea europaea HOM05D005072 ORTHO05D006209 5.1e-09 67.0 162 32.1
Lsat_1_v5_gn_2_76440 Lactuca sativa HOM05D000807 ORTHO05D000662 1.4e-06 58.9 33 72.7


User provided reference genes

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