Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034975 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 1.3e-87 326.2 158 100.0
CSS0049408 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 6.1e-64 247.7 147 88.4
TAR376G1108 Trochodendron aralioides HOM05D005114 ORTHO05D006301 9.5e-41 170.6 138 62.3
Duzib248G1587 Durio zibethinus HOM05D005114 ORTHO05D006301 2.3e-39 166.0 151 57.6
CiPaw.05G093800 Carya illinoinensis HOM05D005114 ORTHO05D006301 5.2e-39 164.9 141 61.0
COL.COLO4_34318 Corchorus olitorius HOM05D005114 ORTHO05D006301 1.2e-38 163.7 151 57.0
Migut.N01364 Erythranthe guttata HOM05D005114 ORTHO05D006301 1.2e-38 163.7 154 57.8
Haze_01976 Corylus avellana HOM05D005114 ORTHO05D006301 2.6e-38 162.5 150 59.3
Gohir.A03G170500 Gossypium hirsutum HOM05D005114 ORTHO05D006301 7.5e-38 161.0 154 53.9
Gorai.005G216400 Gossypium raimondii HOM05D005114 ORTHO05D006301 7.5e-38 161.0 154 53.9
TAR628G1615 Trochodendron aralioides HOM05D005114 ORTHO05D006301 1.3e-37 160.2 138 60.1
Manes.15G113200 Manihot esculenta HOM05D005114 ORTHO05D006301 2.2e-37 159.5 141 59.6
Cfa005386 Carpinus fangiana HOM05D005114 ORTHO05D006301 2.8e-37 159.1 150 59.3
Thecc.02G147000 Theobroma cacao HOM05D005114 ORTHO05D006301 4.9e-37 158.3 151 55.0
Gohir.D02G193600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 8.3e-37 157.5 157 53.5
Gohir.D12G013600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 5.4e-36 154.8 154 55.8
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 7.0e-36 154.5 151 57.0
Gorai.008G013600 Gossypium raimondii HOM05D005114 ORTHO05D006301 5.9e-35 151.4 154 55.2
TAR381G0701 Trochodendron aralioides HOM05D005114 ORTHO05D006301 1.0e-34 150.6 150 54.7
Duzib052G0751 Durio zibethinus HOM05D005114 ORTHO05D006301 1.7e-34 149.8 159 52.8
Rhsim05G0044800 Rhododendron simsii HOM05D005114 ORTHO05D006301 1.7e-34 149.8 146 52.7
SalBow5G2991 Salvia bowleyana HOM05D005114 ORTHO05D006301 1.7e-34 149.8 146 54.8
SalBow5G4655 Salvia bowleyana HOM05D005114 ORTHO05D006301 1.7e-34 149.8 146 54.8
QL11p056532 Quercus lobata HOM05D005114 ORTHO05D006301 1.5e-33 146.7 150 56.0
Sabra04G0139700 Salix brachista HOM05D005114 ORTHO05D006301 1.5e-33 146.7 139 60.4
Aqoxy6G01552 Aquilegia oxysepala HOM05D005114 ORTHO05D006301 1.9e-33 146.4 138 54.3
Potri.009G168800 Populus trichocarpa HOM05D005114 ORTHO05D006301 1.9e-33 146.4 141 56.7
MSTRG.27609 Avicennia marina HOM05D005114 ORTHO05D006301 9.5e-33 144.1 140 57.1
Ciclev10029408m.g Citrus clementina HOM05D005114 ORTHO05D006301 1.2e-32 143.7 155 51.6
Nitab4.5_0000783g0020 Nicotiana tabacum HOM05D005114 ORTHO05D006301 2.8e-32 142.5 177 47.5
Atru.chr5.3568 Acer truncatum HOM05D005114 ORTHO05D006301 4.7e-32 141.7 153 51.0
Cpa.g.sc232.10 Carica papaya HOM05D005114 ORTHO05D006301 4.7e-32 141.7 149 52.3
Eucgr.I01537 Eucalyptus grandis HOM05D005114 ORTHO05D006301 4.7e-32 141.7 147 53.7
Oeu025012.1 Olea europaea HOM05D005114 ORTHO05D006301 6.1e-32 141.4 141 56.0
Potri.004G207500 Populus trichocarpa HOM05D005114 ORTHO05D006301 6.1e-32 141.4 139 56.8
Oeu061898.1 Olea europaea HOM05D005114 ORTHO05D006301 4.0e-31 138.7 135 54.1
Sabra09G0131100 Salix brachista HOM05D005114 ORTHO05D006301 5.2e-31 138.3 139 57.6
ClCG02G003320 Citrullus lanatus HOM05D005114 ORTHO05D006301 1.2e-30 137.1 151 51.0
Duzib132G0223 Durio zibethinus HOM05D005114 ORTHO05D006301 1.2e-30 137.1 125 60.0
Sopen01g054350 Solanum pennellii HOM05D005114 ORTHO05D006301 4.4e-30 135.2 170 47.1
Lj5P171T50 Lonicera japonica HOM05D005114 ORTHO05D006301 5.7e-30 134.8 99 60.6
Solyc01g112260.4 Solanum lycopersicum HOM05D005114 ORTHO05D006301 7.5e-30 134.4 171 46.2
CANSAT25G0809 Cannabis sativa HOM05D005114 ORTHO05D006301 1.4e-28 130.2 152 52.0
TWI31G1388 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 1.4e-28 130.2 146 51.4
Lsat_1_v5_gn_4_127800 Lactuca sativa HOM05D005114 ORTHO05D006301 1.8e-28 129.8 157 45.9
PGR142G2291 Punica granatum HOM05D005114 ORTHO05D006301 5.4e-28 128.3 147 49.7
FAN27G0013 Fragaria x ananassa HOM05D005114 ORTHO05D006301 2.7e-27 125.9 138 52.2
Dinv41866 Davidia involucrata HOM05D005114 ORTHO05D006301 4.6e-27 125.2 153 51.0
FvH4_2g16910 Fragaria vesca HOM05D005114 ORTHO05D006301 5.9e-27 124.8 138 52.2
FAN24G2001 Fragaria x ananassa HOM05D008916 ORTHO05D029537 5.9e-27 124.8 138 52.2
CDE06G2378 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 1.3e-26 123.6 142 45.1
MD05G1140900 Malus domestica HOM05D005114 ORTHO05D006301 1.3e-26 123.6 148 50.7
MD11G1242200 Malus domestica HOM05D005114 ORTHO05D006301 1.3e-26 123.6 141 52.5
RcHm_v2.0_Chr6g0281051 Rosa chinensis HOM05D005114 ORTHO05D006301 1.7e-26 123.2 139 50.4
Os08g0511400 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 2.3e-26 122.9 147 44.2
Sed0004058 Sechium edule HOM05D005114 ORTHO05D006301 3.9e-26 122.1 155 46.5
Nn6g31654 Nelumbo nucifera HOM05D005114 ORTHO05D006301 5.0e-26 121.7 118 55.1
Lsat_1_v5_gn_8_120760 Lactuca sativa HOM05D005114 ORTHO05D006301 6.6e-26 121.3 152 44.1
PSO210G3276 Papaver somniferum HOM05D005114 ORTHO05D006301 6.6e-26 121.3 139 48.2
PSO761G0527 Papaver somniferum HOM05D005114 ORTHO05D006301 1.9e-25 119.8 139 47.5
SGA_v2.0_scaffold98G29308 Striga asiatica HOM05D005114 ORTHO05D006301 1.9e-25 119.8 138 52.9
Phvul.008G292700 Phaseolus vulgaris HOM05D005114 ORTHO05D006301 3.3e-25 119.0 136 49.3
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 3.3e-25 119.0 128 56.2
Sed0025941 Sechium edule HOM05D005114 ORTHO05D006301 3.3e-25 119.0 133 51.9
CDE07G1352 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 4.3e-25 118.6 142 45.1
ClCG02G010460 Citrullus lanatus HOM05D005114 ORTHO05D006301 5.6e-25 118.2 134 50.7
CsaV3_6G010060 Cucumis sativus L. HOM05D005114 ORTHO05D006301 5.6e-25 118.2 134 50.7
MELO3C013487.2 Cucumis melo HOM05D005114 ORTHO05D006301 9.5e-25 117.5 134 50.0
FAN15G0896 Fragaria x ananassa HOM05D005114 ORTHO05D006301 2.8e-24 115.9 134 50.0
LjContig00081g0003123 Lotus japonicus HOM05D005114 ORTHO05D006301 3.6e-24 115.5 137 47.4
EL10Ac9g21545 Beta vulgaris HOM05D005114 ORTHO05D006301 4.7e-24 115.2 147 47.6
MELO3C015705.2 Cucumis melo HOM05D005114 ORTHO05D006301 4.7e-24 115.2 148 45.3
TWI75G1159 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 4.7e-24 115.2 117 52.1
unitig_0.g2368 Utricularia gibba HOM05D005114 ORTHO05D006301 6.2e-24 114.8 128 51.6
Ah.01g009940 Amaranthus hybridus HOM05D005114 ORTHO05D006301 2.3e-23 112.8 155 46.5
unitig_26.g9983 Utricularia gibba HOM05D005114 ORTHO05D006301 2.3e-23 112.8 113 51.3
DCAR_006992 Daucus carota HOM05D005114 ORTHO05D006301 5.2e-23 111.7 121 50.4
Ah.01g017650 Amaranthus hybridus HOM05D005114 ORTHO05D006301 8.9e-23 110.9 154 46.1
VMungo0647G0598 Vigna mungo HOM05D005114 ORTHO05D006301 1.2e-22 110.5 127 50.4
CAN.G1645.5 Capsicum annuum HOM05D005114 ORTHO05D006301 1.5e-22 110.2 89 58.4
Glyma.02G311900 Glycine max HOM05D005114 ORTHO05D006301 5.8e-22 108.2 146 46.6
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 9.8e-22 107.5 84 61.9
Lsat_1_v5_gn_3_48420 Lactuca sativa HOM05D005114 ORTHO05D006301 3.7e-21 105.5 146 43.8
unitig_749.g13979 Utricularia gibba HOM05D005114 ORTHO05D006301 4.9e-21 105.1 113 48.7
Eucgr.H04995 Eucalyptus grandis HOM05D005114 ORTHO05D006301 6.4e-21 104.8 136 45.6
Zm00001eb252690 Zea mays HOM05D005114 ORTHO05D006301 6.4e-21 104.8 141 41.1
CiPaw.06G114800 Carya illinoinensis HOM05D005114 ORTHO05D006301 1.4e-20 103.6 100 57.0
Os02g0715300 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 1.4e-20 103.6 108 48.1
ATR0605G119 Amborella trichopoda HOM05D005114 ORTHO05D006301 3.2e-20 102.4 148 45.3
PSO541G2758 Papaver somniferum HOM05D005114 ORTHO05D006301 1.2e-19 100.5 130 43.8
PSO675G3082 Papaver somniferum HOM05D005114 ORTHO05D006301 2.0e-19 99.8 129 43.4
Carub.0007s0497 Capsella rubella HOM05D005114 ORTHO05D006301 1.7e-18 96.7 106 49.1
HPP92_018957 Vanilla planifolia HOM05D005114 ORTHO05D006301 1.7e-18 96.7 121 44.6
CARHR243650 Cardamine hirsuta HOM05D005114 ORTHO05D006301 3.9e-18 95.5 106 47.2
Sp7g33120 Schrenkiella parvula HOM05D005114 ORTHO05D006301 6.6e-18 94.7 105 45.7
HanXRQChr15g0479801 Helianthus annuus HOM05D005114 ORTHO05D006301 1.1e-17 94.0 75 58.7
PGR042G3856 Punica granatum HOM05D005114 ORTHO05D006301 1.9e-17 93.2 135 40.0
MBI04_g33967_MAGBIO Magnolia biondii HOM05D005114 ORTHO05D006301 4.3e-17 92.0 128 48.4
AL7G15830 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 5.6e-17 91.7 107 47.7
AT4G35320 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 5.6e-17 91.7 107 47.7
BraA01t00308Z Brassica rapa HOM05D005114 ORTHO05D006301 9.5e-17 90.9 110 45.5
BolC1t00348H Brassica oleracea HOM05D005114 ORTHO05D006301 1.2e-16 90.5 110 44.5
CsaV3_7G002020 Cucumis sativus L. HOM05D005114 ORTHO05D006301 1.2e-16 90.5 133 44.4
AUR62013183 Chenopodium quinoa HOM05D005114 ORTHO05D006301 1.6e-16 90.1 75 54.7
A01p03230 Brassica napus HOM05D005114 ORTHO05D006301 2.1e-16 89.7 110 44.5
Thhalv10026488m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 2.1e-16 89.7 137 41.6
THA.LOC104819696 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 2.8e-16 89.4 107 49.5
Lalb_Chr10g0107691 Lupinus albus HOM05D005114 ORTHO05D006301 3.6e-16 89.0 134 40.3
Glyma.14G000700 Glycine max HOM05D005114 ORTHO05D006301 4.7e-16 88.6 108 50.0
Medtr5g099250 Medicago truncatula HOM05D005114 ORTHO05D006301 6.2e-16 88.2 155 40.6
BcaNung00605 Brassica carinata HOM05D005114 ORTHO05D006301 8.1e-16 87.8 112 43.8
C01p03580 Brassica napus HOM05D005114 ORTHO05D006301 8.1e-16 87.8 112 43.8
HanXRQChr16g0528291 Helianthus annuus HOM05D005114 ORTHO05D006301 8.1e-16 87.8 75 56.0
Sc08g0002110 Simmondsia chinensis HOM05D005114 ORTHO05D006301 1.4e-15 87.0 145 39.3
Aa31LG2G14950 Aethionema arabicum HOM05D005114 ORTHO05D006301 1.8e-15 86.7 116 42.2
THA.LOC104807409 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 2.3e-15 86.3 107 49.5
HPP92_019672 Vanilla planifolia HOM05D005114 ORTHO05D006301 2.3e-15 86.3 151 37.7
HanXRQChr14g0449881 Helianthus annuus HOM05D005114 ORTHO05D006301 3.1e-15 85.9 145 39.3
TPR.G18628 Trifolium pratense HOM05D005114 ORTHO05D006301 2.0e-14 83.2 94 45.7
Lju1609C0T0 Lonicera japonica HOM05D005114 ORTHO05D006301 2.6e-14 82.8 50 64.0
Zm00001eb035190 Zea mays HOM05D005114 ORTHO05D006301 5.8e-14 81.6 132 35.6
Ca_06504_v3 Cicer arietinum L. HOM05D005114 ORTHO05D006301 2.2e-13 79.7 156 37.8
Zm00001eb188970 Zea mays HOM05D005114 ORTHO05D006301 4.6e-11 72.0 107 44.9
Gohir.A12G012850 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.0e-10 70.9 64 56.2
SEGI_30505 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 2.3e-10 69.7 79 43.0
HPP92_017809 Vanilla planifolia HOM05D005114 ORTHO05D006301 5.1e-10 68.6 128 36.7
SEGI_06952 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 1.5e-09 67.0 141 31.9
AT2G17300 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 2.5e-09 66.2 113 41.6
BraA07t28162Z Brassica rapa HOM05D005114 ORTHO05D006301 3.3e-09 65.9 137 36.5
A07p03740 Brassica napus HOM05D005114 ORTHO05D006301 4.3e-09 65.5 137 38.0
BcaC06g36254 Brassica carinata HOM05D005114 ORTHO05D006301 1.2e-08 63.9 137 37.2
C07p05980 Brassica napus HOM05D005114 ORTHO05D006301 1.2e-08 63.9 137 37.2
BolC7t41007H Brassica oleracea HOM05D005114 ORTHO05D006301 1.2e-08 63.9 137 37.2
Dinv13785 Davidia involucrata HOM05D005114 ORTHO05D006301 3.6e-08 62.4 58 58.6
SEGI_39678 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 4.7e-08 62.0 78 42.3
Dinv11287 Davidia involucrata HOM05D005114 ORTHO05D006301 8.1e-08 61.2 58 58.6
SEGI_36834 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 1.2e-06 57.4 83 38.6
Zm00001eb199930 Zea mays HOM05D005114 ORTHO05D006301 5.8e-06 55.1 133 30.1


User provided reference genes

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