Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012099 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 8.0e-112 407.1 211 100.0
CSS0034926 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 8.0e-112 407.1 211 100.0
CSS0004722 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.2e-96 356.7 211 86.7
CSS0021117 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.2e-96 356.7 211 86.7
Actinidia34155 Actinidia chinensis HOM05D002831 ORTHO05D004341 1.7e-85 319.7 210 81.0
Actinidia08576 Actinidia chinensis HOM05D002831 ORTHO05D004341 4.0e-79 298.5 211 77.7
Dinv28390 Davidia involucrata HOM05D002831 ORTHO05D004341 2.2e-77 292.7 210 73.3
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 3.3e-73 278.9 201 73.6
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 1.8e-71 273.1 204 73.5
Rhsim09G0200400 Rhododendron simsii HOM05D002831 ORTHO05D004341 9.0e-71 270.8 211 71.6
Lj1P1004T73 Lonicera japonica HOM05D002831 ORTHO05D004341 5.8e-70 268.1 208 69.7
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 4.9e-69 265.0 204 71.1
Actinidia31838 Actinidia chinensis HOM05D002831 ORTHO05D004341 2.4e-68 262.7 210 72.4
Peaxi162Scf00618g00748 Petunia axillaris HOM05D001680 ORTHO05D004341 6.9e-63 244.6 209 65.1
Cpa.g.sc107.104 Carica papaya HOM05D002831 ORTHO05D004341 1.2e-62 243.8 211 66.4
Hma1.2p1_0274F.1_g110180 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 9.9e-62 240.7 212 66.0
TAR374G0609 Trochodendron aralioides HOM05D002831 ORTHO05D004341 1.3e-61 240.4 208 66.8
DCAR_020268 Daucus carota HOM05D002831 ORTHO05D004341 3.8e-61 238.8 211 60.2
PGSC0003DMG400028898 Solanum tuberosum HOM05D002831 ORTHO05D004341 4.9e-61 238.4 209 64.6
Peaxi162Scf00444g00016 Petunia axillaris HOM05D002831 ORTHO05D004341 8.4e-61 237.7 209 66.0
Sopen06g012030 Solanum pennellii HOM05D002831 ORTHO05D004341 2.4e-60 236.1 209 63.6
Nitab4.5_0000084g0400 Nicotiana tabacum HOM05D002831 ORTHO05D004341 7.1e-60 234.6 209 64.6
Potri.017G143215 Populus trichocarpa HOM05D002831 ORTHO05D004341 2.7e-59 232.6 207 63.8
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 7.9e-59 231.1 211 63.5
Nitab4.5_0000572g0140 Nicotiana tabacum HOM05D002831 ORTHO05D004341 1.0e-58 230.7 209 63.2
Nitab4.5_0003825g0080 Nicotiana tabacum HOM05D002831 ORTHO05D004341 1.0e-58 230.7 209 64.1
Cc02_g02420 Coffea canephora HOM05D002831 ORTHO05D004341 1.8e-58 229.9 211 61.6
TWI23G0387 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 3.0e-58 229.2 209 60.3
Thecc.03G183700 Theobroma cacao HOM05D002831 ORTHO05D004341 3.9e-58 228.8 209 64.6
CAN.G126.12 Capsicum annuum HOM05D002831 ORTHO05D004341 5.1e-58 228.4 210 62.9
COL.COLO4_10060 Corchorus olitorius HOM05D002831 ORTHO05D004341 3.3e-57 225.7 210 63.3
Atru.chr1.379 Acer truncatum HOM05D002831 ORTHO05D004341 1.3e-56 223.8 210 63.3
Atru.ctg97_1.16 Acer truncatum HOM05D002831 ORTHO05D004341 1.3e-56 223.8 210 63.3
SalBow4G1512 Salvia bowleyana HOM05D002831 ORTHO05D004341 3.7e-56 222.2 212 63.2
Duzib084G1013 Durio zibethinus HOM05D002831 ORTHO05D004341 4.8e-56 221.9 209 61.7
Oeu036905.1 Olea europaea HOM05D002831 ORTHO05D004341 4.8e-56 221.9 210 61.9
Ciclev10005857m.g Citrus clementina HOM05D002831 ORTHO05D004341 8.1e-56 221.1 209 62.2
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 1.1e-55 220.7 209 61.2
Potri.004G079900 Populus trichocarpa HOM05D002831 ORTHO05D004341 5.3e-55 218.4 209 60.8
Sabra17G0120100 Salix brachista HOM05D002831 ORTHO05D004341 6.9e-55 218.0 209 60.8
Duzib068G1050 Durio zibethinus HOM05D002831 ORTHO05D004341 2.0e-54 216.5 209 62.7
Sopen03g003930 Solanum pennellii HOM05D002831 ORTHO05D004341 7.6e-54 214.5 209 61.7
AUR62021127 Chenopodium quinoa HOM05D002831 ORTHO05D004341 1.7e-53 213.4 206 59.2
PGSC0003DMG400010167 Solanum tuberosum HOM05D002831 ORTHO05D004341 1.7e-53 213.4 198 63.1
Oeu060465.1 Olea europaea HOM05D002831 ORTHO05D004341 2.2e-53 213.0 202 58.9
DCAR_009393 Daucus carota HOM05D002831 ORTHO05D004341 2.9e-53 212.6 211 60.2
AUR62031417 Chenopodium quinoa HOM05D002831 ORTHO05D004341 1.4e-52 210.3 206 58.3
TWI39G0102 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 1.6e-51 206.8 212 59.0
Solyc06g036250.2 Solanum lycopersicum HOM05D002831 ORTHO05D004341 3.5e-51 205.7 184 63.0
Duzib205G1365 Durio zibethinus HOM05D002831 ORTHO05D004341 1.0e-50 204.1 206 60.2
Gohir.A12G255500 Gossypium hirsutum HOM05D002831 ORTHO05D004341 6.7e-50 201.4 210 60.0
Gohir.D12G256900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 6.7e-50 201.4 210 59.5
Gorai.008G275100 Gossypium raimondii HOM05D002831 ORTHO05D004341 6.7e-50 201.4 210 59.5
TWI14G0525 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 8.7e-50 201.1 207 58.9
MSTRG.27090 Avicennia marina HOM05D002831 ORTHO05D004341 2.5e-49 199.5 211 59.2
CiPaw.06G003300 Carya illinoinensis HOM05D002831 ORTHO05D004341 2.5e-49 199.5 207 57.5
Aqoxy7G00243 Aquilegia oxysepala HOM05D002831 ORTHO05D004341 4.3e-49 198.7 209 57.4
PSO478G4817 Papaver somniferum HOM05D002831 ORTHO05D004341 1.6e-48 196.8 211 56.4
EL10Ac3g05428 Beta vulgaris HOM05D002831 ORTHO05D004341 2.8e-48 196.1 205 57.1
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 1.8e-47 193.4 212 55.2
Manes.14G023000 Manihot esculenta HOM05D002831 ORTHO05D004341 4.1e-47 192.2 206 54.4
PSO782G2858 Papaver somniferum HOM05D002831 ORTHO05D004341 4.1e-47 192.2 212 56.6
Prupe.2G300400 Prunus persica HOM05D002831 ORTHO05D004341 6.9e-47 191.4 209 53.6
CiPaw.06G003100 Carya illinoinensis HOM05D002831 ORTHO05D004341 9.0e-47 191.0 207 56.0
Hma1.2p1_0327F.1_g126410 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 2.0e-46 189.9 207 54.1
MSTRG.74 Avicennia marina HOM05D002831 ORTHO05D004341 3.4e-46 189.1 211 56.4
Gohir.D09G177200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 5.8e-46 188.3 211 57.3
Gorai.006G199200 Gossypium raimondii HOM05D002831 ORTHO05D004341 5.8e-46 188.3 211 56.9
TAR375G0840 Trochodendron aralioides HOM05D002831 ORTHO05D004341 3.8e-45 185.7 211 55.0
Nitab4.5_0000248g0010 Nicotiana tabacum HOM05D002831 ORTHO05D004341 5.0e-45 185.3 182 59.3
Gohir.A09G182600 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.4e-44 183.7 213 56.8
Eucgr.A02748 Eucalyptus grandis HOM05D002831 ORTHO05D004341 4.2e-44 182.2 208 53.8
Manes.06G152100 Manihot esculenta HOM05D002831 ORTHO05D004341 7.1e-44 181.4 206 52.4
QL09p012962 Quercus lobata HOM05D002831 ORTHO05D004341 1.2e-43 180.6 210 53.8
Migut.F00296 Erythranthe guttata HOM05D002831 ORTHO05D004341 1.3e-42 177.2 213 54.5
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 1.8e-42 176.8 203 52.2
PGR042G3073 Punica granatum HOM05D002831 ORTHO05D004341 3.0e-42 176.0 207 57.0
THA.LOC104800271 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 1.5e-41 173.7 197 52.8
Haze_00039 Corylus avellana HOM05D002831 ORTHO05D004341 2.5e-41 172.9 147 59.2
FAN03G0781 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.3e-40 170.6 210 50.0
Gorai.007G012600 Gossypium raimondii HOM05D002831 ORTHO05D004341 2.2e-40 169.9 209 54.5
Gohir.A11G011900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.8e-40 169.5 210 54.8
MD07G1278500 Malus domestica HOM05D002831 ORTHO05D004341 2.8e-40 169.5 210 50.5
FAN10G3196 Fragaria x ananassa HOM05D002831 ORTHO05D004341 3.7e-40 169.1 210 49.5
FAN01G0089 Fragaria x ananassa HOM05D002831 ORTHO05D004341 4.8e-40 168.7 210 49.5
CAN.G204.16 Capsicum annuum HOM05D002831 ORTHO05D004341 8.2e-40 167.9 199 54.3
Gohir.D11G011100 Gossypium hirsutum HOM05D002831 ORTHO05D004341 8.2e-40 167.9 209 54.1
MD01G1207900 Malus domestica HOM05D002831 ORTHO05D004341 8.2e-40 167.9 210 50.0
CiPaw.12G018300 Carya illinoinensis HOM05D002831 ORTHO05D004341 1.8e-39 166.8 187 55.1
FAN03G0359 Fragaria x ananassa HOM05D002831 ORTHO05D004341 2.4e-39 166.4 210 49.5
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 3.1e-39 166.0 209 54.1
Ah.13g069150 Amaranthus hybridus HOM05D002831 ORTHO05D004341 1.5e-38 163.7 206 51.0
SGA_v2.0_scaffold113G31691 Striga asiatica HOM05D002831 ORTHO05D008967 1.5e-38 163.7 209 54.5
FvH4_7g30190 Fragaria vesca HOM05D002831 ORTHO05D004341 2.0e-38 163.3 210 49.0
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 2.0e-38 163.3 210 49.0
CANSAT11G0421 Cannabis sativa HOM05D002831 ORTHO05D004341 3.4e-38 162.5 208 50.0
Lalb_Chr02g0141231 Lupinus albus HOM05D002831 ORTHO05D004341 1.3e-37 160.6 191 57.1
ATR0661G020 Amborella trichopoda HOM05D002831 ORTHO05D004341 1.7e-37 160.2 212 49.5
unitig_37.g11969 Utricularia gibba HOM05D002831 ORTHO05D004341 6.5e-37 158.3 209 50.2
Phvul.004G109000 Phaseolus vulgaris HOM05D002831 ORTHO05D004341 1.1e-36 157.5 204 51.0
CARHR233110 Cardamine hirsuta HOM05D002831 ORTHO05D004341 1.9e-36 156.8 211 48.3
Glyma.16G179300 Glycine max HOM05D002831 ORTHO05D004341 1.9e-36 156.8 204 51.0
Sp7g23710 Schrenkiella parvula HOM05D002831 ORTHO05D004341 2.5e-36 156.4 213 47.9
AT4G25670 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 4.2e-36 155.6 211 47.4
Carub.0007s1530 Capsella rubella HOM05D002831 ORTHO05D004341 4.2e-36 155.6 210 48.1
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 4.2e-36 155.6 201 48.8
Glyma.09G132500 Glycine max HOM05D002831 ORTHO05D004341 5.5e-36 155.2 205 53.7
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 5.5e-36 155.2 204 51.5
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 7.2e-36 154.8 197 53.8
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 9.4e-36 154.5 119 78.2
Thhalv10027473m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 1.2e-35 154.1 209 46.9
AL7G27410 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 1.6e-35 153.7 210 47.6
SGA_v2.0_scaffold60G21104 Striga asiatica HOM05D002831 ORTHO05D004341 1.4e-34 150.6 214 52.8
Aa31LG3G8920 Aethionema arabicum HOM05D002831 ORTHO05D004341 2.3e-34 149.8 189 48.1
AL7G27390 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 2.3e-34 149.8 210 48.1
BraA02t06237Z Brassica rapa HOM05D002831 ORTHO05D004341 3.0e-34 149.4 196 49.0
THA.LOC104811959 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 3.9e-34 149.1 261 41.4
MBI11_g04751_MAGBIO Magnolia biondii HOM05D002831 ORTHO05D004341 6.7e-34 148.3 203 52.2
AL8G27020 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 8.8e-34 147.9 203 46.3
BNapus_Darmor_BZH_scaffold_232p00070 Brassica napus HOM05D002831 ORTHO05D004341 1.1e-33 147.5 200 46.5
Sc19g0001290 Simmondsia chinensis HOM05D002831 ORTHO05D004341 1.5e-33 147.1 198 51.0
AT4G25690 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 2.0e-33 146.7 210 47.6
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 2.0e-33 146.7 197 52.8
MSTRG.8713 Avicennia marina HOM05D002831 ORTHO05D004341 4.3e-33 145.6 210 47.1
Gohir.A08G098200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 4.3e-33 145.6 197 52.8
Gohir.D08G109800 Gossypium hirsutum HOM05D002831 ORTHO05D004341 4.3e-33 145.6 197 52.8
CsaV3_3G017430 Cucumis sativus L. HOM05D002831 ORTHO05D004341 1.3e-32 144.1 206 47.6
Migut.F01087 Erythranthe guttata HOM05D002831 ORTHO05D004341 2.2e-32 143.3 197 50.8
MELO3C006940.2 Cucumis melo HOM05D002831 ORTHO05D004341 3.7e-32 142.5 205 48.3
A02p11720 Brassica napus HOM05D002831 ORTHO05D004341 6.3e-32 141.7 196 48.0
AT5G52550 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 8.2e-32 141.4 201 44.8
Thhalv10026278m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 8.2e-32 141.4 206 46.1
HPP92_022210 Vanilla planifolia HOM05D002831 ORTHO05D004341 8.2e-32 141.4 212 44.3
BraA01t01645Z Brassica rapa HOM05D002831 ORTHO05D004341 1.4e-31 140.6 211 45.0
SGA_v2.0_scaffold10G05296 Striga asiatica HOM05D002831 ORTHO05D004341 4.1e-31 139.0 212 45.3
HPP92_022228 Vanilla planifolia HOM05D002831 ORTHO05D004341 6.9e-31 138.3 212 43.9
Lalb_Chr03g0034811 Lupinus albus HOM05D002831 ORTHO05D004341 1.5e-30 137.1 195 48.7
BolC1t02046H Brassica oleracea HOM05D002831 ORTHO05D004341 2.0e-30 136.7 212 44.8
Sp7g23730 Schrenkiella parvula HOM05D002831 ORTHO05D004341 2.0e-30 136.7 209 47.4
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 4.5e-30 135.6 204 49.5
A01p16930 Brassica napus HOM05D002831 ORTHO05D004341 5.9e-30 135.2 200 44.5
ClCG05G008340 Citrullus lanatus HOM05D002831 ORTHO05D004341 1.7e-29 133.7 205 47.3
Glyma.20G162500 Glycine max HOM05D002831 ORTHO05D004341 1.7e-29 133.7 204 49.0
C01p21210 Brassica napus HOM05D002831 ORTHO05D004341 3.8e-29 132.5 200 45.0
CARHR233150 Cardamine hirsuta HOM05D002831 ORTHO05D004341 1.1e-28 131.0 210 46.2
Lj5g0008853 Lotus japonicus HOM05D002831 ORTHO05D004341 1.4e-28 130.6 206 47.6
Carub.0008s1268 Capsella rubella HOM05D002831 ORTHO05D004341 2.5e-28 129.8 265 38.9
FAN10G0429 Fragaria x ananassa HOM05D002831 ORTHO05D004341 3.2e-28 129.4 210 41.0
Glyma.10G231300 Glycine max HOM05D002831 ORTHO05D004341 4.2e-28 129.0 204 48.5
Psat6g196360 Pisum sativum HOM05D002831 ORTHO05D004341 5.5e-28 128.6 206 49.5
Ca_10728_v3 Cicer arietinum L. HOM05D002831 ORTHO05D004341 7.2e-28 128.3 204 47.5
BcaC03g14518 Brassica carinata HOM05D002831 ORTHO05D004341 9.4e-28 127.9 120 55.8
BcaC06g32789 Brassica carinata HOM05D002831 ORTHO05D004341 1.2e-27 127.5 214 44.9
BcaNung07307 Brassica carinata HOM05D002831 ORTHO05D004341 2.1e-27 126.7 208 43.8
Lalb_Chr06g0161301 Lupinus albus HOM05D002831 ORTHO05D004341 2.1e-27 126.7 195 46.7
BraA01t01648Z Brassica rapa HOM05D002831 ORTHO05D004341 2.7e-27 126.3 215 44.7
Sabra06G0007800 Salix brachista HOM05D002831 ORTHO05D010484 3.6e-27 125.9 132 48.5
unitig_0.g2470 Utricularia gibba HOM05D002831 ORTHO05D004341 7.9e-27 124.8 209 43.5
HPP92_008924 Vanilla planifolia HOM05D002831 ORTHO05D004341 1.4e-26 124.0 196 48.0
HPP92_022231 Vanilla planifolia HOM05D002831 ORTHO05D004341 3.9e-26 122.5 139 54.0
BolC1t02049H Brassica oleracea HOM05D002831 ORTHO05D004341 5.1e-26 122.1 214 46.7
ECA232G1618 Erigeron canadensis HOM05D002831 ORTHO05D004341 6.7e-26 121.7 221 44.3
BcaB05g21966 Brassica carinata HOM05D002831 ORTHO05D004341 2.0e-25 120.2 191 46.1
Sed0011382 Sechium edule HOM05D002831 ORTHO05D004341 7.4e-25 118.2 203 43.8
Lalb_Chr21g0305221 Lupinus albus HOM05D002831 ORTHO05D004341 1.7e-24 117.1 157 54.8
HanXRQChr14g0462531 Helianthus annuus HOM05D002831 ORTHO05D004341 2.2e-24 116.7 223 45.3
VMungo0720G1018 Vigna mungo HOM05D002831 ORTHO05D004341 7.0e-23 111.7 195 44.1
TPR.G21560 Trifolium pratense HOM05D002831 ORTHO05D004341 3.5e-22 109.4 206 46.6
Sed0001656 Sechium edule HOM05D002831 ORTHO05D004341 4.5e-22 109.0 207 42.5
C07p54490 Brassica napus HOM05D000048 ORTHO05D000445 3.8e-21 105.9 100 66.0
BolC7t45934H Brassica oleracea HOM05D000048 ORTHO05D000445 3.8e-21 105.9 100 66.0
ECA238G2131 Erigeron canadensis HOM05D002831 ORTHO05D004341 3.8e-21 105.9 209 43.5
BraA03t14689Z Brassica rapa HOM05D000048 ORTHO05D000445 1.5e-20 104.0 100 73.0
SEGI_15574 Sequoiadendron giganteum HOM05D002831 ORTHO05D004341 2.5e-20 103.2 235 37.9
Nn1g08525 Nelumbo nucifera HOM05D002831 ORTHO05D004341 4.7e-19 99.0 146 45.2
CARHR265540 Cardamine hirsuta HOM05D002831 ORTHO05D004341 6.1e-19 98.6 90 64.4
Medtr1g100090 Medicago truncatula HOM05D002831 ORTHO05D004341 7.5e-17 91.7 133 52.6
Carub.0007s1527 Capsella rubella HOM05D002831 ORTHO05D004341 2.4e-15 86.7 72 70.8
Lsat_1_v5_gn_2_131301 Lactuca sativa HOM05D002831 ORTHO05D004341 3.1e-15 86.3 216 38.9
Lsat_1_v5_gn_9_56481 Lactuca sativa HOM05D002831 ORTHO05D004341 7.0e-15 85.1 212 38.2
Os02g0104200 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 1.0e-13 81.3 191 37.2
Lj8C18T8 Lonicera japonica HOM05D002831 ORTHO05D004341 4.7e-11 72.4 214 38.8
Zm00001eb229390 Zea mays HOM05D002831 ORTHO05D004341 6.1e-11 72.0 213 36.2
Pp3c26_7830 Physcomitrium patens HOM05D040812 ORTHO05D031180 3.7e-08 62.8 199 34.7
Nn1g01625 Nelumbo nucifera HOM05D002831 ORTHO05D004341 1.1e-07 61.2 50 76.0
Os06g0106900 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 1.8e-07 60.5 93 50.5


User provided reference genes

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