Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 9.6e-71 270.0 132 100.0
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 8.9e-69 263.5 132 97.0
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.9e-67 258.5 132 94.7
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.4e-58 228.8 132 87.1
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.5e-55 218.8 111 94.6
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 2.0e-52 209.1 111 89.2
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 4.5e-52 208.0 111 88.3
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 7.6e-52 207.2 111 88.3
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 4.9e-51 204.5 113 83.2
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 1.4e-50 203.0 111 85.6
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 3.2e-50 201.8 111 87.4
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 4.2e-50 201.4 110 87.3
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 4.2e-50 201.4 111 83.8
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 5.5e-50 201.1 111 86.5
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 5.5e-50 201.1 111 82.9
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 9.3e-50 200.3 111 85.6
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 9.3e-50 200.3 111 84.7
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 1.2e-49 199.9 111 82.9
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.2e-49 199.9 111 82.9
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.2e-49 199.9 111 82.9
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 1.6e-49 199.5 111 82.9
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 2.7e-49 198.7 111 84.7
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.7e-49 198.7 113 79.6
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 2.7e-49 198.7 111 83.8
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 3.5e-49 198.4 111 83.8
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 3.5e-49 198.4 111 84.7
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 7.9e-49 197.2 111 82.9
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 7.9e-49 197.2 111 81.1
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 7.9e-49 197.2 111 82.9
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 7.9e-49 197.2 111 82.9
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 7.9e-49 197.2 111 82.0
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.0e-48 196.8 111 82.0
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.0e-48 196.8 111 81.1
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.3e-48 196.4 111 81.1
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 1.3e-48 196.4 111 81.1
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 1.3e-48 196.4 111 81.1
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 1.8e-48 196.1 119 81.5
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 1.8e-48 196.1 111 81.1
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 1.8e-48 196.1 111 82.0
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 1.8e-48 196.1 111 81.1
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 2.3e-48 195.7 111 81.1
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 2.3e-48 195.7 111 81.1
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 3.0e-48 195.3 107 82.2
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 3.9e-48 194.9 110 80.9
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 5.1e-48 194.5 111 82.0
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 5.1e-48 194.5 111 82.0
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 5.1e-48 194.5 111 82.0
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 5.1e-48 194.5 111 81.1
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 5.1e-48 194.5 111 81.1
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 5.1e-48 194.5 111 80.2
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 5.1e-48 194.5 111 82.0
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 6.7e-48 194.1 111 83.8
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 6.7e-48 194.1 111 80.2
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 8.7e-48 193.7 111 79.3
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 8.7e-48 193.7 111 82.0
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 1.1e-47 193.4 111 80.2
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 1.5e-47 193.0 111 79.3
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.9e-47 192.6 111 80.2
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 1.9e-47 192.6 111 81.1
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.9e-47 192.6 110 80.9
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.9e-47 192.6 110 80.9
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 3.3e-47 191.8 109 78.9
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 4.3e-47 191.4 111 81.1
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 4.3e-47 191.4 111 78.4
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 5.6e-47 191.0 111 76.6
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 5.6e-47 191.0 111 76.6
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 7.4e-47 190.7 111 78.4
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 9.6e-47 190.3 111 81.1
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 1.3e-46 189.9 111 76.6
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 2.1e-46 189.1 111 79.3
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 3.7e-46 188.3 111 75.7
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 6.2e-46 187.6 110 80.9
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 6.2e-46 187.6 111 79.3
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 1.8e-45 186.0 111 79.3
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 3.1e-45 185.3 116 79.3
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 3.1e-45 185.3 111 79.3
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 3.1e-45 185.3 111 79.3
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 5.3e-45 184.5 110 76.4
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 6.9e-45 184.1 112 75.0
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 9.0e-45 183.7 112 74.1
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 9.0e-45 183.7 112 74.1
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 9.0e-45 183.7 112 74.1
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 1.2e-44 183.3 111 74.8
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 1.2e-44 183.3 110 76.4
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 2.0e-44 182.6 112 73.2
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 2.0e-44 182.6 112 73.2
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 2.0e-44 182.6 110 77.3
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 4.5e-44 181.4 111 78.4
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 5.8e-44 181.0 111 78.4
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 5.8e-44 181.0 110 77.3
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 1.3e-43 179.9 111 73.9
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 1.7e-43 179.5 112 72.3
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.7e-43 179.5 112 71.4
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 2.2e-43 179.1 112 72.3
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 4.9e-43 177.9 110 72.7
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 6.5e-43 177.6 112 72.3
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 8.4e-43 177.2 111 71.2
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 1.1e-42 176.8 112 70.5
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 1.1e-42 176.8 112 71.4
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 1.9e-42 176.0 111 78.4
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 2.5e-42 175.6 112 71.4
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 3.2e-42 175.3 112 71.4
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 4.2e-42 174.9 111 71.2
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 4.2e-42 174.9 110 75.5
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 5.5e-42 174.5 112 69.6
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 7.1e-42 174.1 110 70.0
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 9.3e-42 173.7 112 70.5
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 9.3e-42 173.7 112 70.5
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.7e-41 172.2 110 69.1
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 6.0e-41 171.0 111 76.6
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 7.9e-41 170.6 110 74.5
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 1.8e-40 169.5 111 74.8
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 3.9e-40 168.3 111 69.4
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 3.9e-40 168.3 110 70.0
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 4.3e-39 164.9 110 69.1
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 2.4e-37 159.1 111 64.9
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 3.1e-37 158.7 110 65.5
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 5.3e-37 157.9 83 83.1
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 1.5e-36 156.4 96 72.9
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 2.2e-35 152.5 83 78.3
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 8.5e-35 150.6 81 80.2
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 8.5e-35 150.6 85 77.6
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 1.9e-34 149.4 110 56.4
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 7.9e-33 144.1 111 60.4
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 1.0e-32 143.7 110 60.0
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.1e-29 133.7 102 63.7
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 6.9e-29 131.0 102 62.7
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 5.9e-28 127.9 89 70.8
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 1.3e-27 126.7 110 54.5
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 1.7e-27 126.3 96 58.3
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 6.1e-25 117.9 70 84.3
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 1.5e-15 86.7 109 38.5
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 2.8e-14 82.4 95 37.9
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 2.0e-12 76.3 109 36.7
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 6.5e-11 71.2 35 80.0
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 1.5e-10 70.1 109 35.8
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 1.0e-08 63.9 78 38.5
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 5.2e-08 61.6 32 78.1
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.5e-07 60.1 34 70.6
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 8.2e-06 54.3 34 58.8


User provided reference genes

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