Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034895 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D016156 3.2e-78 295.0 150 100.0
CSS0037513 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 7.5e-64 247.3 126 99.2
Actinidia03822 Actinidia chinensis HOM05D003193 ORTHO05D004924 2.1e-53 212.6 140 77.1
Dinv06951 Davidia involucrata HOM05D003193 ORTHO05D004924 1.1e-51 206.8 126 80.2
QL03p032698 Quercus lobata HOM05D003193 ORTHO05D004924 2.4e-49 199.1 125 79.2
Rhsim05G0170000 Rhododendron simsii HOM05D003193 ORTHO05D004924 4.4e-48 194.9 129 77.5
CiPaw.07G075300 Carya illinoinensis HOM05D003193 ORTHO05D004924 5.8e-48 194.5 125 75.2
vmacro19973 Vaccinium macrocarpon HOM05D003193 ORTHO05D004924 2.2e-47 192.6 158 66.5
GSVIVG01026340001 Vitis vinifera HOM05D003193 ORTHO05D004924 3.8e-47 191.8 125 76.8
Manes.09G146200 Manihot esculenta HOM05D003193 ORTHO05D004924 8.4e-47 190.7 125 75.2
CANSAT54G2238 Cannabis sativa HOM05D003193 ORTHO05D004924 1.9e-46 189.5 125 73.6
DCAR_029994 Daucus carota HOM05D003193 ORTHO05D004924 1.9e-46 189.5 125 73.6
Atru.chr2.1127 Acer truncatum HOM05D003193 ORTHO05D004924 4.2e-46 188.3 125 72.8
Eucgr.H04206 Eucalyptus grandis HOM05D003193 ORTHO05D004924 4.2e-46 188.3 125 69.6
Nitab4.5_0001498g0050 Nicotiana tabacum HOM05D003193 ORTHO05D004924 5.4e-46 188.0 125 71.2
Potri.019G024200 Populus trichocarpa HOM05D003193 ORTHO05D004924 9.3e-46 187.2 125 73.6
Duzib177G0185 Durio zibethinus HOM05D003193 ORTHO05D004924 2.7e-45 185.7 125 70.4
Nitab4.5_0002063g0040 Nicotiana tabacum HOM05D003193 ORTHO05D004924 2.7e-45 185.7 125 70.4
Thecc.05G265800 Theobroma cacao HOM05D003193 ORTHO05D004924 3.5e-45 185.3 125 71.2
HanXRQChr05g0145131 Helianthus annuus HOM05D003193 ORTHO05D004924 7.8e-45 184.1 125 70.4
Lsat_1_v5_gn_9_45981 Lactuca sativa HOM05D003193 ORTHO05D004924 1.0e-44 183.7 125 68.8
Migut.F02049 Erythranthe guttata HOM05D003193 ORTHO05D004924 1.7e-44 183.0 125 68.8
COL.COLO4_37867 Corchorus olitorius HOM05D003193 ORTHO05D004924 2.3e-44 182.6 121 74.4
TAR365G0326 Trochodendron aralioides HOM05D003193 ORTHO05D004924 1.1e-43 180.3 125 70.4
ECA232G1705 Erigeron canadensis HOM05D003193 ORTHO05D004924 4.3e-43 178.3 125 68.0
SalBow1G5750 Salvia bowleyana HOM05D003193 ORTHO05D004924 7.3e-43 177.6 125 68.0
CAN.G131.15 Capsicum annuum HOM05D003193 ORTHO05D004924 9.6e-43 177.2 125 68.8
TAR636G0188 Trochodendron aralioides HOM05D003193 ORTHO05D004924 1.6e-42 176.4 125 68.8
TWI60G0900 Tripterygium wilfordii HOM05D003193 ORTHO05D004924 4.8e-42 174.9 150 60.7
Prupe.6G353600 Prunus persica HOM05D003193 ORTHO05D004924 6.2e-42 174.5 125 68.8
Peaxi162Scf00071g02610 Petunia axillaris HOM05D003193 ORTHO05D004924 1.4e-41 173.3 125 69.6
Gohir.A11G243500 Gossypium hirsutum HOM05D003193 ORTHO05D004924 2.4e-41 172.6 125 68.0
Solyc04g050520.3 Solanum lycopersicum HOM05D003193 ORTHO05D004924 2.4e-41 172.6 134 63.4
Gorai.007G272000 Gossypium raimondii HOM05D003193 ORTHO05D004924 6.9e-41 171.0 125 68.0
Sopen04g021290 Solanum pennellii HOM05D003193 ORTHO05D004924 6.9e-41 171.0 134 62.7
Ciclev10018428m.g Citrus clementina HOM05D003193 ORTHO05D004924 1.2e-40 170.2 129 65.9
Cpa.g.sc51.22 Carica papaya HOM05D003193 ORTHO05D004924 5.8e-40 167.9 135 64.4
Gohir.D11G253200 Gossypium hirsutum HOM05D003193 ORTHO05D004924 7.6e-40 167.5 125 67.2
Sabra19G0034100 Salix brachista HOM05D003193 ORTHO05D004924 1.3e-39 166.8 125 67.2
MD12G1252000 Malus domestica HOM05D003193 ORTHO05D004924 4.9e-39 164.9 125 65.6
Cc09_g03080 Coffea canephora HOM05D003193 ORTHO05D004924 6.4e-39 164.5 125 64.8
Sc09g0001810 Simmondsia chinensis HOM05D003193 ORTHO05D004924 6.4e-39 164.5 125 60.8
Nn1g03055 Nelumbo nucifera HOM05D003193 ORTHO05D004924 1.1e-38 163.7 125 62.4
TPR.G4710 Trifolium pratense HOM05D003193 ORTHO05D004924 1.1e-38 163.7 123 65.9
FAN05G0534 Fragaria x ananassa HOM05D003193 ORTHO05D004924 1.9e-38 162.9 125 64.8
FvH4_6g01410 Fragaria vesca HOM05D003193 ORTHO05D004924 3.2e-38 162.2 125 64.8
FAN05G3617 Fragaria x ananassa HOM05D003193 ORTHO05D004924 3.2e-38 162.2 125 64.8
FAN14G5315 Fragaria x ananassa HOM05D003193 ORTHO05D004924 3.2e-38 162.2 125 64.8
Medtr7g116425 Medicago truncatula HOM05D003193 ORTHO05D004924 5.4e-38 161.4 123 65.0
PGR004G2196 Punica granatum HOM05D003193 ORTHO05D004924 9.3e-38 160.6 125 61.6
FAN14G4461 Fragaria x ananassa HOM05D003193 ORTHO05D004924 1.2e-37 160.2 125 64.0
RcHm_v2.0_Chr3g0449041 Rosa chinensis HOM05D003193 ORTHO05D004924 1.2e-37 160.2 125 64.8
PSO832G2952 Papaver somniferum HOM05D003193 ORTHO05D004924 3.5e-37 158.7 125 65.6
PSO764G0333 Papaver somniferum HOM05D003193 ORTHO05D004924 4.6e-37 158.3 122 66.4
SGA_v2.0_scaffold62G21472 Striga asiatica HOM05D003193 ORTHO05D004924 6.0e-37 157.9 125 59.2
FAN02G3021 Fragaria x ananassa HOM05D003193 ORTHO05D004924 7.9e-37 157.5 125 64.0
Lj1g0024446 Lotus japonicus HOM05D003193 ORTHO05D004924 1.8e-36 156.4 123 62.6
AL2G19160 Arabidopsis lyrata HOM05D003193 ORTHO05D004924 2.3e-36 156.0 125 61.6
Aqoxy5G00090 Aquilegia oxysepala HOM05D003193 ORTHO05D004924 3.0e-36 155.6 125 62.4
Lalb_Chr04g0261971 Lupinus albus HOM05D003193 ORTHO05D004924 3.0e-36 155.6 123 61.8
AT1G64790 Arabidopsis thaliana HOM05D003193 ORTHO05D004924 3.9e-36 155.2 125 61.6
Psat0s4268g0040 Pisum sativum HOM05D003193 ORTHO05D004924 6.7e-36 154.5 123 61.0
SpUn0003_0310 Schrenkiella parvula HOM05D003193 ORTHO05D004924 6.7e-36 154.5 125 59.2
Ca_09471_v3 Cicer arietinum L. HOM05D003193 ORTHO05D004924 8.7e-36 154.1 123 62.6
Aa31LG2G2030 Aethionema arabicum HOM05D003193 ORTHO05D004924 1.5e-35 153.3 126 60.3
arahy.Tifrunner.gnm1.ann1.ZPSV32 Arachis hypogaea HOM05D003193 ORTHO05D004924 1.5e-35 153.3 123 61.8
Glyma.03G252300 Glycine max HOM05D003193 ORTHO05D004924 1.5e-35 153.3 123 63.4
MBI07_g08903_MAGBIO Magnolia biondii HOM05D003193 ORTHO05D004924 1.5e-35 153.3 125 63.2
Thhalv10022486m.g Eutrema salsugineum HOM05D003193 ORTHO05D004924 1.9e-35 152.9 125 60.8
arahy.Tifrunner.gnm1.ann1.9XF1RW Arachis hypogaea HOM05D003193 ORTHO05D004924 2.5e-35 152.5 122 62.3
C02p37720 Brassica napus HOM05D003193 ORTHO05D004924 5.6e-35 151.4 125 58.4
BolC2t09791H Brassica oleracea HOM05D003193 ORTHO05D004924 5.6e-35 151.4 125 58.4
Hund28419 Selenicereus undatus HOM05D003193 ORTHO05D004924 5.6e-35 151.4 125 54.4
Hund28421 Selenicereus undatus HOM05D003193 ORTHO05D004924 5.6e-35 151.4 125 54.4
BcaC03g16020 Brassica carinata HOM05D003193 ORTHO05D004924 7.4e-35 151.0 125 58.4
CARHR056150 Cardamine hirsuta HOM05D003193 ORTHO05D004924 9.6e-35 150.6 125 60.0
Glyma.19G249900 Glycine max HOM05D003193 ORTHO05D004924 1.3e-34 150.2 123 62.6
A02p23930 Brassica napus HOM05D003193 ORTHO05D004924 1.6e-34 149.8 125 57.6
BraA02t07385Z Brassica rapa HOM05D003193 ORTHO05D004924 1.6e-34 149.8 125 57.6
THA.LOC104821587 Tarenaya hassleriana HOM05D003193 ORTHO05D004924 1.6e-34 149.8 125 56.8
Phvul.006G107000 Phaseolus vulgaris HOM05D003193 ORTHO05D004924 2.1e-34 149.4 123 62.6
VMungo0540G1922 Vigna mungo HOM05D003193 ORTHO05D004924 4.8e-34 148.3 123 61.8
BcaB05g23590 Brassica carinata HOM05D003193 ORTHO05D004924 8.1e-34 147.5 125 56.8
Carub.0012s0016 Capsella rubella HOM05D003193 ORTHO05D004924 8.1e-34 147.5 141 51.8
EL10Ac4g09775 Beta vulgaris HOM05D003193 ORTHO05D004924 2.4e-33 146.0 125 51.2
Sed0015322 Sechium edule HOM05D003193 ORTHO05D004924 6.9e-33 144.4 125 55.2
ClCG11G010250 Citrullus lanatus HOM05D003193 ORTHO05D004924 1.2e-32 143.7 125 56.8
unitig_37.g12281 Utricularia gibba HOM05D003193 ORTHO05D004924 1.5e-32 143.3 126 54.0
MELO3C008660.2 Cucumis melo HOM05D003193 ORTHO05D004924 2.0e-32 142.9 125 56.0
CsaV3_2G010070 Cucumis sativus L. HOM05D003193 ORTHO05D004924 7.6e-32 141.0 125 54.4
CDE09G0882 Ceratophyllum demersum HOM05D003193 ORTHO05D004924 6.4e-31 137.9 125 57.6
MD04G1234000 Malus domestica HOM05D003193 ORTHO05D004924 1.1e-30 137.1 104 64.4
Haze_04476 Corylus avellana HOM05D003193 ORTHO05D004924 3.5e-29 132.1 85 70.6
HPP92_001295 Vanilla planifolia HOM05D003193 ORTHO05D004924 9.0e-25 117.5 125 48.0
Lj2A47G48 Lonicera japonica HOM05D003193 ORTHO05D004924 1.2e-24 117.1 125 52.8
FAN09G1546 Fragaria x ananassa HOM05D003193 ORTHO05D004924 5.8e-24 114.8 125 52.8
AUR62000638 Chenopodium quinoa HOM05D003193 ORTHO05D004924 1.9e-22 109.8 131 45.0
AUR62006993 Chenopodium quinoa HOM05D003193 ORTHO05D004924 7.1e-22 107.8 131 43.5
AL2G19220 Arabidopsis lyrata HOM05D003193 ORTHO05D004924 2.7e-21 105.9 118 50.8
Zm00001eb055550 Zea mays HOM05D003193 ORTHO05D004924 4.8e-18 95.1 121 40.5
MD08G1086100 Malus domestica HOM05D003193 ORTHO05D004924 8.2e-18 94.4 72 58.3
Pp3c22_8910 Physcomitrium patens HOM05D003193 ORTHO05D004924 7.2e-14 81.3 126 32.5
Mapoly0135s0025 Marchantia polymorpha HOM05D003193 ORTHO05D004924 1.6e-13 80.1 126 31.0
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 1.3e-10 70.5 61 54.1
ATR0787G183 Amborella trichopoda HOM05D003193 ORTHO05D004924 8.2e-10 67.8 60 53.3
AagrBONN_evm.TU.Sc2ySwM_344.2455 Anthoceros agrestis HOM05D003193 ORTHO05D004924 1.1e-09 67.4 112 32.1
MD04G1165900 Malus domestica HOM05D003193 ORTHO05D005802 1.8e-09 66.6 53 52.8
Haze_04475 Corylus avellana HOM05D003193 ORTHO05D004924 3.1e-09 65.9 40 77.5
Lsat_1_v5_gn_0_13081 Lactuca sativa HOM05D000608 ORTHO05D000444 1.5e-08 63.5 40 72.5
Lsat_1_v5_gn_5_52660 Lactuca sativa HOM05D031160 ORTHO05D016156 3.4e-08 62.4 41 70.7
Lsat_1_v5_gn_7_45220 Lactuca sativa HOM05D000608 ORTHO05D000444 3.4e-08 62.4 41 70.7
Lsat_1_v5_gn_8_147341 Lactuca sativa HOM05D000608 ORTHO05D000444 4.5e-08 62.0 41 68.3
Lsat_1_v5_gn_4_79741 Lactuca sativa HOM05D000043 ORTHO05D016156 7.7e-08 61.2 40 70.0
Lsat_1_v5_gn_5_46841 Lactuca sativa HOM05D000608 ORTHO05D016156 1.0e-07 60.8 41 68.3
Lsat_1_v5_gn_6_85640 Lactuca sativa HOM05D031160 ORTHO05D016156 1.0e-07 60.8 40 70.0
Lsat_1_v5_gn_7_75700 Lactuca sativa HOM05D031160 ORTHO05D016156 1.0e-07 60.8 41 68.3
Lsat_1_v5_gn_8_162201 Lactuca sativa HOM05D000608 ORTHO05D000444 1.0e-07 60.8 40 70.0
Lsat_1_v5_gn_9_35960 Lactuca sativa HOM05D031160 ORTHO05D016156 1.0e-07 60.8 40 70.0
Lsat_1_v5_gn_9_51641 Lactuca sativa HOM05D000043 ORTHO05D016156 1.0e-07 60.8 40 70.0
Lsat_1_v5_gn_9_73681 Lactuca sativa HOM05D000608 ORTHO05D000444 1.0e-07 60.8 40 70.0
SEGI_25764 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 2.2e-07 59.7 59 45.8
SEGI_16883 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 8.5e-07 57.8 65 44.6
SHI15643 Sapria himalayana HOM05D003193 ORTHO05D004924 1.1e-06 57.4 83 47.0


User provided reference genes

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