Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034887 Camellia sinensis var. sinensis HOM05D007623 ORTHO05D009641 2.2e-159 567.0 281 100.0
CSS0048304 Camellia sinensis var. sinensis HOM05D007623 ORTHO05D009641 4.7e-157 559.3 281 98.2
Actinidia31923 Actinidia chinensis HOM05D007623 ORTHO05D009641 1.7e-103 381.3 300 66.7
Actinidia24041 Actinidia chinensis HOM05D007623 ORTHO05D009641 5.1e-103 379.8 300 68.3
Dinv34009 Davidia involucrata HOM05D007623 ORTHO05D009641 6.2e-101 372.9 308 63.6
vmacro01293 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 5.1e-95 353.2 297 63.3
Prupe.2G062100 Prunus persica HOM05D007623 ORTHO05D009641 7.9e-88 329.3 306 57.2
Thecc.02G321100 Theobroma cacao HOM05D007623 ORTHO05D009641 8.2e-85 319.3 303 55.4
Lj6A773T130 Lonicera japonica HOM05D007623 ORTHO05D009641 7.6e-83 312.8 312 57.1
GSVIVG01010112001 Vitis vinifera HOM05D007623 ORTHO05D009641 3.2e-81 307.4 303 56.8
FvH4_4g29120 Fragaria vesca HOM05D007623 ORTHO05D009641 9.3e-81 305.8 306 54.6
FAN22G0497 Fragaria x ananassa HOM05D007623 ORTHO05D009641 9.3e-81 305.8 306 54.6
COL.COLO4_27779 Corchorus olitorius HOM05D007623 ORTHO05D009641 1.2e-80 305.4 291 56.0
Gorai.005G147900 Gossypium raimondii HOM05D007623 ORTHO05D009641 1.2e-80 305.4 298 55.0
Gohir.A03G106900 Gossypium hirsutum HOM05D007623 ORTHO05D009641 1.6e-80 305.1 298 54.7
Manes.14G091100 Manihot esculenta HOM05D007623 ORTHO05D009641 2.7e-80 304.3 308 54.5
Sabra10G0105800 Salix brachista HOM05D007623 ORTHO05D009641 4.6e-80 303.5 307 52.1
Cfa008839 Carpinus fangiana HOM05D007623 ORTHO05D009641 1.3e-79 302.0 310 53.9
FAN12G1349 Fragaria x ananassa HOM05D007623 ORTHO05D009641 1.3e-79 302.0 305 54.1
Haze_11851 Corylus avellana HOM05D007623 ORTHO05D009641 3.0e-79 300.8 310 52.6
FAN17G1802 Fragaria x ananassa HOM05D007623 ORTHO05D009641 1.1e-78 298.9 307 52.8
MD16G1054700 Malus domestica HOM05D007623 ORTHO05D009641 7.4e-78 296.2 302 53.3
RcHm_v2.0_Chr4g0437181 Rosa chinensis HOM05D007623 ORTHO05D009641 9.7e-78 295.8 304 53.0
CiPaw.06G095500 Carya illinoinensis HOM05D007623 ORTHO05D009641 2.4e-76 291.2 310 48.7
Sed0026487 Sechium edule HOM05D007623 ORTHO05D009641 2.0e-75 288.1 310 49.4
Rhsim12G0070700 Rhododendron simsii HOM05D007623 ORTHO05D009641 1.4e-73 282.0 274 58.8
Atru.chr11.1545 Acer truncatum HOM05D007623 ORTHO05D009641 5.1e-71 273.5 312 48.1
Hund25149 Selenicereus undatus HOM05D007623 ORTHO05D009641 6.7e-71 273.1 318 48.1
CANSAT64G0130 Cannabis sativa HOM05D007623 ORTHO05D009641 8.8e-71 272.7 306 50.0
ClCG05G023480 Citrullus lanatus HOM05D007623 ORTHO05D009641 1.3e-69 268.9 291 49.5
MELO3C026661.2 Cucumis melo HOM05D007623 ORTHO05D009641 1.8e-68 265.0 304 47.7
Lsat_1_v5_gn_6_31920 Lactuca sativa HOM05D007623 ORTHO05D009641 2.6e-67 261.2 236 57.2
HanXRQChr08g0215011 Helianthus annuus HOM05D007623 ORTHO05D009641 5.9e-67 260.0 276 52.2
CsaV3_3G030580 Cucumis sativus L. HOM05D007623 ORTHO05D009641 4.2e-65 253.8 312 46.5
SHI04831 Sapria himalayana HOM05D007623 ORTHO05D009641 4.2e-65 253.8 273 48.7
Aqoxy1G01216 Aquilegia oxysepala HOM05D007623 ORTHO05D009641 3.6e-64 250.8 311 46.3
Sopen00g002400 Solanum pennellii HOM05D007623 ORTHO05D009641 3.0e-63 247.7 261 50.6
PGSC0003DMG400019642 Solanum tuberosum HOM05D007623 ORTHO05D009641 3.9e-63 247.3 303 46.9
DCAR_023738 Daucus carota HOM05D007623 ORTHO05D009641 2.0e-62 245.0 230 56.1
ECA233G1899 Erigeron canadensis HOM05D000630 ORTHO05D001413 4.4e-62 243.8 227 57.7
Prupe.7G020300 Prunus persica HOM05D007623 ORTHO05D009641 9.7e-62 242.7 209 59.3
Nn1g03057 Nelumbo nucifera HOM05D007623 ORTHO05D009641 2.2e-61 241.5 326 44.2
THA.LOC104805220 Tarenaya hassleriana HOM05D007623 ORTHO05D009641 8.8e-55 219.5 235 47.2
Thhalv10009738m.g Eutrema salsugineum HOM05D007623 ORTHO05D009641 2.6e-54 218.0 281 42.7
Oeu019601.2 Olea europaea HOM05D007623 ORTHO05D009641 7.5e-54 216.5 201 57.2
EL10Ac6g14659 Beta vulgaris HOM05D007623 ORTHO05D009641 4.8e-53 213.8 272 47.1
AL1G25410 Arabidopsis lyrata HOM05D007623 ORTHO05D009641 6.3e-53 213.4 250 45.2
Aa31LG7G1940 Aethionema arabicum HOM05D007623 ORTHO05D009641 9.1e-52 209.5 289 41.5
AUR62007860 Chenopodium quinoa HOM05D007623 ORTHO05D009641 2.0e-51 208.4 280 45.7
AUR62003048 Chenopodium quinoa HOM05D007623 ORTHO05D009641 7.7e-51 206.5 278 44.6
Sc11g0002680 Simmondsia chinensis HOM05D007623 ORTHO05D009641 7.7e-51 206.5 267 45.3
Cc11_g11460 Coffea canephora HOM05D007623 ORTHO05D009641 3.8e-50 204.1 206 53.9
Gohir.D02G132000 Gossypium hirsutum HOM05D007623 ORTHO05D009641 2.3e-47 194.9 127 74.8
Migut.E00256 Erythranthe guttata HOM05D007623 ORTHO05D009641 5.2e-47 193.7 208 50.5
BraA06t24162Z Brassica rapa HOM05D007623 ORTHO05D009641 8.8e-47 193.0 258 42.6
A06p09730 Brassica napus HOM05D007623 ORTHO05D009641 1.5e-46 192.2 258 42.2
Sp1g12290 Schrenkiella parvula HOM05D007623 ORTHO05D009641 8.3e-45 186.4 210 45.7
C05p11430 Brassica napus HOM05D007623 ORTHO05D009641 1.4e-44 185.7 255 41.6
BcaB02g06459 Brassica carinata HOM05D007623 ORTHO05D009641 3.1e-44 184.5 270 41.1
Carub.0001s1335 Capsella rubella HOM05D007623 ORTHO05D009641 4.5e-43 180.6 268 39.6
SGA_v2.0_scaffold287G47196 Striga asiatica HOM05D007623 ORTHO05D009641 4.5e-43 180.6 215 45.6
Ah.03g137460 Amaranthus hybridus HOM05D007623 ORTHO05D009641 5.9e-43 180.3 266 41.0
TAR374G0443 Trochodendron aralioides HOM05D007623 ORTHO05D009641 5.9e-43 180.3 123 68.3
BolC5t29896H Brassica oleracea HOM05D007623 ORTHO05D009641 1.3e-42 179.1 194 46.4
Ciclev10031004m.g Citrus clementina HOM05D007623 ORTHO05D009641 6.5e-42 176.8 122 65.6
MD13G1055600 Malus domestica HOM05D007623 ORTHO05D009641 1.5e-41 175.6 133 64.7
BcaC05g25269 Brassica carinata HOM05D007623 ORTHO05D009641 3.2e-41 174.5 204 44.1
Peaxi162Scf00188g01015 Petunia axillaris HOM05D007623 ORTHO05D009641 5.5e-41 173.7 122 70.5
Nitab4.5_0000259g0170 Nicotiana tabacum HOM05D007623 ORTHO05D009641 1.6e-40 172.2 119 71.4
Nitab4.5_0011373g0020 Nicotiana tabacum HOM05D007623 ORTHO05D009641 8.0e-40 169.9 119 71.4
Zm00001eb045730 Zea mays HOM05D007623 ORTHO05D009641 4.3e-33 147.5 145 50.3
Lsat_1_v5_gn_3_22320 Lactuca sativa HOM05D007623 ORTHO05D009641 6.8e-31 140.2 202 46.5
ATR0048G027 Amborella trichopoda HOM05D007623 ORTHO05D009641 8.3e-29 133.3 150 45.3
AT1G13630 Arabidopsis thaliana HOM05D007623 ORTHO05D009641 7.0e-28 130.2 115 54.8
HPP92_001379 Vanilla planifolia HOM05D007623 ORTHO05D009641 1.2e-27 129.4 191 39.3
CAN.G680.12 Capsicum annuum HOM05D007623 ORTHO05D009641 4.6e-27 127.5 95 67.4
CARHR013990 Cardamine hirsuta HOM05D007623 ORTHO05D009641 7.8e-27 126.7 112 53.6
TAR374G1445 Trochodendron aralioides HOM05D007623 ORTHO05D009641 3.0e-26 124.8 155 49.7
BcaB08g34697 Brassica carinata HOM05D007623 ORTHO05D009641 1.1e-25 122.9 125 51.2
Cpa.g.c32845 Carica papaya HOM05D007623 ORTHO05D009641 9.2e-20 103.2 149 40.3
SEGI_39043 Sequoiadendron giganteum HOM05D007623 ORTHO05D009641 3.5e-19 101.3 198 30.8
BcaB06g28282 Brassica carinata HOM05D007623 ORTHO05D009641 5.0e-18 97.4 122 43.4
Lalb_Chr02g0154661 Lupinus albus HOM05D007291 ORTHO05D009038 2.9e-13 81.6 236 25.4
SEGI_32122 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 7.1e-12 77.0 195 24.6
Prupe.4G237400 Prunus persica HOM05D007291 ORTHO05D009038 2.7e-11 75.1 245 24.5
CSS0001323 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D009847 3.5e-11 74.7 231 24.7
MELO3C035731.2 Cucumis melo HOM05D002890 ORTHO05D009847 4.6e-11 74.3 216 25.0
FvH4_7g09470 Fragaria vesca HOM05D000104 ORTHO05D009920 6.0e-11 73.9 185 31.4
SHI25578 Sapria himalayana HOM05D007639 ORTHO05D009509 6.0e-11 73.9 243 25.5
FAN03G1668 Fragaria x ananassa HOM05D000104 ORTHO05D009920 7.8e-11 73.6 185 31.4
FAN10G2081 Fragaria x ananassa HOM05D000104 ORTHO05D009920 1.3e-10 72.8 185 31.4
SalBow7G4426 Salvia bowleyana HOM05D007639 ORTHO05D009509 3.0e-10 71.6 220 25.9
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 3.9e-10 71.2 227 26.4
Lj2g0016301 Lotus japonicus HOM05D007291 ORTHO05D009038 8.6e-10 70.1 257 23.7
Nn1g03517 Nelumbo nucifera HOM05D002890 ORTHO05D009847 1.1e-09 69.7 210 24.3
Rhsim13G0154100 Rhododendron simsii HOM05D002890 ORTHO05D009847 1.1e-09 69.7 196 25.5
ClCG03G004730 Citrullus lanatus HOM05D002890 ORTHO05D009847 1.5e-09 69.3 216 24.1
Thhalv10018418m.g Eutrema salsugineum HOM05D007291 ORTHO05D009038 1.5e-09 69.3 177 26.0
Solyc05g010790.3 Solanum lycopersicum HOM05D007623 ORTHO05D009641 1.9e-09 68.9 101 36.6
Lsat_1_v5_gn_9_106260 Lactuca sativa HOM05D007455 ORTHO05D009431 2.5e-09 68.6 258 24.0
Eucgr.D00277 Eucalyptus grandis HOM05D000104 ORTHO05D009920 5.6e-09 67.4 213 26.3
RcHm_v2.0_Chr1g0346171 Rosa chinensis HOM05D000104 ORTHO05D009920 5.6e-09 67.4 215 27.0
Aqoxy1G00452 Aquilegia oxysepala HOM05D007455 ORTHO05D009431 9.5e-09 66.6 165 24.8
COL.COLO4_31777 Corchorus olitorius HOM05D002890 ORTHO05D009847 1.2e-08 66.2 220 23.2
Nitab4.5_0001130g0070 Nicotiana tabacum HOM05D000104 ORTHO05D009920 2.1e-08 65.5 182 28.0
CiPaw.13G029800 Carya illinoinensis HOM05D000104 ORTHO05D009920 2.8e-08 65.1 187 28.9
Ca_00776_v3 Cicer arietinum L. HOM05D000091 ORTHO05D009038 2.8e-08 65.1 280 24.3
CSS0035807 Camellia sinensis var. sinensis HOM05D007455 ORTHO05D009431 8.1e-08 63.5 165 24.8
Ah.10g029280 Amaranthus hybridus HOM05D007623 ORTHO05D009641 1.1e-07 63.2 147 29.3
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 1.1e-07 63.2 174 27.0
Oeu009601.2 Olea europaea HOM05D007639 ORTHO05D009509 1.4e-07 62.8 191 28.8
Ca_26721_v3 Cicer arietinum L. HOM05D007291 ORTHO05D009038 1.8e-07 62.4 218 24.3
Hma1.2p1_1014F.1_g247820 Hydrangea macrophylla HOM05D000104 ORTHO05D009920 3.1e-07 61.6 185 28.1
Lj1g0022204 Lotus japonicus HOM05D000001 ORTHO05D000003 3.1e-07 61.6 137 30.7
Medtr6g005000 Medicago truncatula HOM05D007358 ORTHO05D009117 3.1e-07 61.6 244 23.4
Sc16g0011110 Simmondsia chinensis HOM05D007455 ORTHO05D009431 3.1e-07 61.6 230 24.8
Nitab4.5_0000103g0110 Nicotiana tabacum HOM05D000104 ORTHO05D009920 4.0e-07 61.2 182 27.5
CARHR014000 Cardamine hirsuta HOM05D007623 ORTHO05D009641 5.2e-07 60.8 115 33.0
Nn4g24966 Nelumbo nucifera HOM05D007639 ORTHO05D009509 5.2e-07 60.8 146 29.5
MBI04_g29350_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D000355 6.8e-07 60.5 276 24.6
MBI04_g47847_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D000355 6.8e-07 60.5 276 24.6
Psat6g098880 Pisum sativum HOM05D007291 ORTHO05D009038 6.8e-07 60.5 276 23.2
Carub.0001s1888 Capsella rubella HOM05D007639 ORTHO05D009509 8.9e-07 60.1 212 23.6
Solyc03g095200.1 Solanum lycopersicum HOM05D000104 ORTHO05D009920 8.9e-07 60.1 258 24.4
CARHR019880 Cardamine hirsuta HOM05D007639 ORTHO05D009509 1.5e-06 59.3 147 28.6
Haze_23220 Corylus avellana HOM05D007455 ORTHO05D009431 1.5e-06 59.3 200 26.5
Medtr7g044790 Medicago truncatula HOM05D000104 ORTHO05D009920 1.5e-06 59.3 183 26.8
Phvul.001G173400 Phaseolus vulgaris HOM05D000001 ORTHO05D000003 1.5e-06 59.3 127 30.7
Cfa009846 Carpinus fangiana HOM05D007455 ORTHO05D009431 2.6e-06 58.5 189 27.0
QL04p014212 Quercus lobata HOM05D007455 ORTHO05D009431 2.6e-06 58.5 172 26.2
AL1G31880 Arabidopsis lyrata HOM05D007639 ORTHO05D009509 3.4e-06 58.2 168 25.0
PGSC0003DMG400005248 Solanum tuberosum HOM05D000104 ORTHO05D009920 3.4e-06 58.2 219 25.6
Manes.01G179100 Manihot esculenta HOM05D007455 ORTHO05D009431 4.4e-06 57.8 149 24.8
Sopen03g025210 Solanum pennellii HOM05D000104 ORTHO05D009920 4.4e-06 57.8 220 24.5
Lsat_1_v5_gn_3_22340 Lactuca sativa HOM05D007623 ORTHO05D009641 5.8e-06 57.4 54 51.9
Lalb_Chr03g0040111 Lupinus albus HOM05D000104 ORTHO05D009920 5.8e-06 57.4 165 26.7
Cpa.g.sc64.130 Carica papaya HOM05D006174 ORTHO05D007987 7.6e-06 57.0 200 25.5
MD07G1079700 Malus domestica HOM05D007455 ORTHO05D009431 7.6e-06 57.0 245 24.1
Thhalv10006776m.g Eutrema salsugineum HOM05D007639 ORTHO05D009509 9.9e-06 56.6 129 28.7
Glyma.03G178400 Glycine max HOM05D000001 ORTHO05D000003 9.9e-06 56.6 127 30.7


User provided reference genes

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