Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034883 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 5.5e-279 963.8 527 100.0
CSS0050243 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 6.8e-261 903.7 527 94.3
Dinv32048 Davidia involucrata HOM05D005646 ORTHO05D006828 2.0e-159 566.6 552 60.7
Hma1.2p1_0902F.1_g234850 Hydrangea macrophylla HOM05D005646 ORTHO05D006828 7.3e-146 521.5 546 57.0
Cc02_g29140 Coffea canephora HOM05D005646 ORTHO05D006828 2.2e-134 483.4 474 57.4
QL04p013757 Quercus lobata HOM05D005646 ORTHO05D006828 8.3e-134 481.5 538 53.2
GSVIVG01000839001 Vitis vinifera HOM05D005646 ORTHO05D006828 1.1e-128 464.5 450 60.0
CiPaw.13G011000 Carya illinoinensis HOM05D005646 ORTHO05D006828 3.1e-128 463.0 476 57.1
MSTRG.20533 Avicennia marina HOM05D005646 ORTHO05D006828 5.2e-128 462.2 489 56.2
Duzib128G0351 Durio zibethinus HOM05D005646 ORTHO05D006828 2.7e-124 449.9 461 54.7
SalBow5G2332 Salvia bowleyana HOM05D005646 ORTHO05D006828 4.6e-124 449.1 470 55.1
MBI19_g40603_MAGBIO Magnolia biondii HOM05D005646 ORTHO05D006828 7.3e-122 441.8 349 66.5
Manes.11G002900 Manihot esculenta HOM05D005646 ORTHO05D006828 6.2e-121 438.7 370 61.4
Solyc01g068470.4 Solanum lycopersicum HOM05D005646 ORTHO05D006828 5.3e-120 435.6 489 53.2
Eucgr.J01194 Eucalyptus grandis HOM05D005646 ORTHO05D006828 2.0e-119 433.7 475 53.1
Gohir.D10G253200 Gossypium hirsutum HOM05D005646 ORTHO05D006828 2.0e-119 433.7 350 65.7
Gorai.011G293500 Gossypium raimondii HOM05D005646 ORTHO05D006828 3.4e-119 433.0 350 65.4
Gohir.A10G241000 Gossypium hirsutum HOM05D005646 ORTHO05D006828 4.4e-119 432.6 350 65.7
SGA_v2.0_scaffold249G44948 Striga asiatica HOM05D005646 ORTHO05D006828 1.3e-118 431.0 525 49.5
Thecc.10G006200 Theobroma cacao HOM05D005646 ORTHO05D006828 2.9e-118 429.9 348 63.8
Glyma.11G113800 Glycine max HOM05D005646 ORTHO05D006828 6.4e-118 428.7 373 60.6
Nitab4.5_0000316g0120 Nicotiana tabacum HOM05D005646 ORTHO05D006828 6.4e-118 428.7 356 63.8
Ciclev10031582m.g Citrus clementina HOM05D005646 ORTHO05D006828 8.4e-118 428.3 395 60.0
Atru.chr11.2492 Acer truncatum HOM05D005646 ORTHO05D006828 1.9e-117 427.2 501 50.7
PGR142G3067 Punica granatum HOM05D005646 ORTHO05D006828 2.7e-116 423.3 466 51.5
Ca_20909_v3 Cicer arietinum L. HOM05D005646 ORTHO05D006828 3.5e-116 422.9 474 51.7
DCAR_022352 Daucus carota HOM05D005646 ORTHO05D006828 6.0e-116 422.2 482 51.5
Sopen01g030430 Solanum pennellii HOM05D005646 ORTHO05D006828 6.0e-116 422.2 490 52.2
CDE08G1053 Ceratophyllum demersum HOM05D005646 ORTHO05D006828 7.9e-116 421.8 464 53.0
MD02G1293900 Malus domestica HOM05D005646 ORTHO05D006828 2.3e-115 420.2 470 54.3
Migut.B01206 Erythranthe guttata HOM05D005646 ORTHO05D006828 3.0e-115 419.9 476 52.5
Lj3g0019487 Lotus japonicus HOM05D005646 ORTHO05D006828 3.9e-115 419.5 470 51.9
ClCG01G007660 Citrullus lanatus HOM05D005646 ORTHO05D006828 5.1e-115 419.1 467 54.6
Atru.chr11.2464 Acer truncatum HOM05D005646 ORTHO05D006828 1.5e-114 417.5 443 53.5
THA.LOC104824183 Tarenaya hassleriana HOM05D005646 ORTHO05D006828 1.5e-114 417.5 359 59.3
COL.COLO4_33459 Corchorus olitorius HOM05D005646 ORTHO05D006828 1.9e-114 417.2 354 63.0
Peaxi162Scf00309g00328 Petunia axillaris HOM05D005646 ORTHO05D006828 1.9e-114 417.2 468 53.2
Potri.001G024200 Populus trichocarpa HOM05D005646 ORTHO05D006828 7.3e-114 415.2 447 52.3
Aqoxy1G00222 Aquilegia oxysepala HOM05D005646 ORTHO05D006828 2.1e-113 413.7 357 60.5
Hund13332 Selenicereus undatus HOM05D005646 ORTHO05D006828 3.6e-113 412.9 618 42.2
CAN.G1571.4 Capsicum annuum HOM05D005646 ORTHO05D006828 4.8e-113 412.5 373 60.3
AUR62031673 Chenopodium quinoa HOM05D005646 ORTHO05D006828 4.8e-113 412.5 616 42.2
TPR.G30507 Trifolium pratense HOM05D005646 ORTHO05D006828 4.8e-113 412.5 476 49.6
EL10Ac2g02850 Beta vulgaris HOM05D005646 ORTHO05D006828 6.2e-113 412.1 632 41.9
AUR62032557 Chenopodium quinoa HOM05D005646 ORTHO05D006828 6.2e-113 412.1 616 42.0
Ah.10g030810 Amaranthus hybridus HOM05D005646 ORTHO05D006828 8.1e-113 411.8 329 64.1
Lj9A646T48 Lonicera japonica HOM05D005646 ORTHO05D006828 1.8e-112 410.6 357 61.6
TWI63G1320 Tripterygium wilfordii HOM05D005646 ORTHO05D006828 3.1e-112 409.8 369 58.3
Actinidia19445 Actinidia chinensis HOM05D005646 ORTHO05D006828 4.0e-112 409.5 328 66.8
VMungo1127G2196 Vigna mungo HOM05D005646 ORTHO05D006828 4.0e-112 409.5 460 51.7
Sabra01G0018200 Salix brachista HOM05D005646 ORTHO05D000112 1.2e-111 407.9 432 52.5
Lsat_1_v5_gn_4_30541 Lactuca sativa HOM05D005646 ORTHO05D006828 9.9e-111 404.8 464 50.6
Sc17g0003830 Simmondsia chinensis HOM05D005646 ORTHO05D006828 9.9e-111 404.8 466 50.2
HanXRQChr16g0525351 Helianthus annuus HOM05D005646 ORTHO05D006828 1.3e-110 404.4 366 57.1
ECA234G1046 Erigeron canadensis HOM05D005646 ORTHO05D006828 2.2e-110 403.7 301 65.4
CsaV3_5G024710 Cucumis sativus L. HOM05D005646 ORTHO05D006828 4.9e-110 402.5 466 51.7
Lalb_Chr03g0025471 Lupinus albus HOM05D005646 ORTHO05D006828 5.4e-109 399.1 365 57.8
Medtr4g071010 Medicago truncatula HOM05D005646 ORTHO05D006828 7.1e-109 398.7 412 53.6
SalBow5G2661 Salvia bowleyana HOM05D005646 ORTHO05D006828 9.3e-109 398.3 470 52.3
RcHm_v2.0_Chr7g0221681 Rosa chinensis HOM05D005646 ORTHO05D006828 2.1e-108 397.1 358 59.2
vmacro13731 Vaccinium macrocarpon HOM05D005646 ORTHO05D006828 2.7e-108 396.7 856 36.8
MELO3C005130.2 Cucumis melo HOM05D005646 ORTHO05D006828 3.5e-108 396.4 469 52.5
Sed0017230 Sechium edule HOM05D005646 ORTHO05D006828 1.3e-107 394.4 449 51.7
arahy.Tifrunner.gnm1.ann1.HJ7TPY Arachis hypogaea HOM05D005646 ORTHO05D006828 3.0e-107 393.3 408 53.2
FAN13G1025 Fragaria x ananassa HOM05D005646 ORTHO05D006828 3.0e-107 393.3 358 60.1
Nn7g36491 Nelumbo nucifera HOM05D005646 ORTHO05D006828 3.9e-107 392.9 542 48.5
FAN18G3275 Fragaria x ananassa HOM05D005646 ORTHO05D006828 1.1e-106 391.3 399 55.6
FvH4_5g29000 Fragaria vesca HOM05D005646 ORTHO05D006828 1.5e-106 391.0 402 55.5
TAR053G0001 Trochodendron aralioides HOM05D005646 ORTHO05D006828 1.3e-105 387.9 541 47.5
ATR0217G018 Amborella trichopoda HOM05D005646 ORTHO05D006828 2.1e-105 387.1 471 50.3
FAN08G2254 Fragaria x ananassa HOM05D005646 ORTHO05D006828 1.1e-104 384.8 356 59.0
PSO063G6839 Papaver somniferum HOM05D005646 ORTHO05D006828 5.3e-104 382.5 411 52.1
Prupe.2G029800 Prunus persica HOM05D005646 ORTHO05D006828 5.3e-104 382.5 464 51.9
arahy.Tifrunner.gnm1.ann1.2P0PPD Arachis hypogaea HOM05D005646 ORTHO05D006828 6.9e-104 382.1 390 52.6
Haze_03084 Corylus avellana HOM05D005646 ORTHO05D006828 6.9e-104 382.1 398 55.3
Carub.0004s2080 Capsella rubella HOM05D005646 ORTHO05D006828 2.2e-102 377.1 435 49.7
unitig_746.g26627 Utricularia gibba HOM05D005646 ORTHO05D006828 3.8e-102 376.3 448 50.4
Dinv31492 Davidia involucrata HOM05D005646 ORTHO05D006828 3.2e-101 373.2 413 54.2
CANSAT54G2531 Cannabis sativa HOM05D005646 ORTHO05D006828 4.6e-100 369.4 446 48.0
Cpa.g.sc197.4 Carica papaya HOM05D005646 ORTHO05D006828 2.3e-99 367.1 285 65.3
PSO341G0002 Papaver somniferum HOM05D005646 ORTHO05D006828 3.3e-98 363.2 295 61.7
Rhsim07G0062900 Rhododendron simsii HOM05D005646 ORTHO05D006828 3.3e-98 363.2 945 34.1
C03p25580 Brassica napus HOM05D005646 ORTHO05D006828 1.3e-97 361.3 333 55.3
AL4G36080 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 2.1e-97 360.5 434 47.2
CARHR133490 Cardamine hirsuta HOM05D005646 ORTHO05D006828 2.1e-97 360.5 360 53.3
AT2G38780 Arabidopsis thaliana HOM05D005646 ORTHO05D006828 2.4e-96 357.1 490 44.1
A03p21590 Brassica napus HOM05D005646 ORTHO05D006828 3.1e-96 356.7 356 52.5
Nitab4.5_0013777g0020 Nicotiana tabacum HOM05D005646 ORTHO05D006828 4.1e-96 356.3 360 55.6
Sp4g21170 Schrenkiella parvula HOM05D005646 ORTHO05D006828 5.3e-96 355.9 366 50.8
BolC3t14946H Brassica oleracea HOM05D005646 ORTHO05D006828 3.8e-94 349.7 347 52.7
BraA03t11395Z Brassica rapa HOM05D005646 ORTHO05D006828 8.4e-94 348.6 375 50.4
Aa31LG5G20900 Aethionema arabicum HOM05D005646 ORTHO05D006828 1.8e-91 340.9 497 43.9
Thhalv10016593m.g Eutrema salsugineum HOM05D005646 ORTHO05D006828 1.1e-88 331.6 416 46.2
HPP92_001013 Vanilla planifolia HOM05D005646 ORTHO05D006828 6.5e-86 322.4 328 52.7
SEGI_25656 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 7.4e-82 308.9 469 40.9
Phvul.011G041800 Phaseolus vulgaris HOM05D005646 ORTHO05D006828 3.1e-72 276.9 348 48.0
Psat7g183120 Pisum sativum HOM05D005646 ORTHO05D006828 2.6e-66 257.3 351 44.2
Zm00001eb347150 Zea mays HOM05D005646 ORTHO05D006828 2.2e-65 254.2 349 42.4
Mapoly0066s0082 Marchantia polymorpha HOM05D005646 ORTHO05D006828 3.1e-64 250.4 299 48.8
Sc15g0003140 Simmondsia chinensis HOM05D005646 ORTHO05D006828 7.0e-64 249.2 287 48.4
SMO145G0178 Selaginella moellendorffii HOM05D005646 ORTHO05D006828 8.8e-59 232.3 303 42.6
Pp3c21_7940 Physcomitrium patens HOM05D005646 ORTHO05D006828 1.8e-56 224.6 302 44.4
AagrBONN_evm.TU.Sc2ySwM_228.261 Anthoceros agrestis HOM05D005646 ORTHO05D006828 1.3e-54 218.4 327 37.9
GSVIVG01000664001 Vitis vinifera HOM05D005646 ORTHO05D006828 6.5e-54 216.1 171 64.9
Os05g0381500 Oryza sativa ssp. japonica HOM05D005646 ORTHO05D006828 2.8e-49 200.7 199 50.8
AL4G20430 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 3.1e-48 197.2 288 43.1
RcHm_v2.0_Chr2g0113191 Rosa chinensis HOM05D005646 ORTHO05D006828 2.5e-45 187.6 239 46.0
RcHm_v2.0_Chr4g0400611 Rosa chinensis HOM05D005646 ORTHO05D006828 6.1e-44 183.0 166 56.0
PGSC0003DMG400000847 Solanum tuberosum HOM05D005646 ORTHO05D006828 3.7e-41 173.7 134 66.4
Glyma.12G039666 Glycine max HOM05D005646 ORTHO05D006828 4.3e-37 160.2 147 62.6
Glyma.18G124100 Glycine max HOM05D005646 ORTHO05D006828 2.8e-36 157.5 123 61.0
CBR_g29393 Chara braunii HOM05D005646 ORTHO05D006828 4.7e-36 156.8 401 32.4
SalBow1G3971 Salvia bowleyana HOM05D005646 ORTHO05D006828 2.6e-34 151.0 274 38.3
PSO017G4843 Papaver somniferum HOM05D005646 ORTHO05D006828 2.9e-33 147.5 119 63.9
Cre13.g607900 Chlamydomonas reinhardtii HOM05D005646 ORTHO05D006828 2.7e-31 141.0 231 34.6
RcHm_v2.0_Chr2g0154951 Rosa chinensis HOM05D005646 ORTHO05D006828 3.5e-31 140.6 149 50.3
AL4G20290 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 7.3e-29 132.9 125 55.2
PRCOL_00006924 Prasinoderma coloniale HOM05D005646 ORTHO05D006828 1.5e-26 125.2 238 34.5
SEGI_07819 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 3.4e-26 124.0 128 56.2
SEGI_35855 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 3.4e-26 124.0 128 56.2
RcHm_v2.0_Chr4g0400621 Rosa chinensis HOM05D005646 ORTHO05D006828 1.7e-22 111.7 88 59.1
Actinidia19446 Actinidia chinensis HOM05D005646 ORTHO05D006828 2.5e-21 107.8 245 40.4
arahy.Tifrunner.gnm1.ann1.7I4JN8 Arachis hypogaea HOM05D005646 ORTHO05D006828 2.5e-21 107.8 62 80.6
arahy.Tifrunner.gnm1.ann1.B52RT5 Arachis hypogaea HOM05D005646 ORTHO05D006828 2.7e-15 87.8 52 76.9
COL.COLO4_25675 Corchorus olitorius HOM05D005646 ORTHO05D006828 1.0e-14 85.9 64 59.4
PGSC0003DMG400000846 Solanum tuberosum HOM05D005646 ORTHO05D006828 4.3e-13 80.5 72 61.1
MCO02G103 Micromonas commoda HOM05D005646 ORTHO05D006828 2.1e-12 78.2 110 35.5
CARHR125840 Cardamine hirsuta HOM05D005646 ORTHO05D006828 3.6e-12 77.4 117 39.3
RcHm_v2.0_Chr1g0326961 Rosa chinensis HOM05D005646 ORTHO05D006828 1.7e-09 68.6 50 60.0
RcHm_v2.0_Chr4g0400631 Rosa chinensis HOM05D005646 ORTHO05D006828 1.7e-09 68.6 46 67.4
CBR_g38389 Chara braunii HOM05D005646 ORTHO05D006828 1.2e-07 62.4 149 29.5
COL.COLO4_26597 Corchorus olitorius HOM05D000001 ORTHO05D010004 1.6e-07 62.0 72 47.2
Glyma.12G039732 Glycine max HOM05D005646 ORTHO05D006828 5.1e-06 57.0 194 27.8


User provided reference genes

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