Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034873 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D000722 2.7e-49 198.4 100 100.0
CSS0018471 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D006344 1.8e-21 105.9 57 93.0
CSS0028505 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D000722 1.2e-20 103.2 57 89.5
Rhsim02G0237900 Rhododendron simsii HOM05D000070 ORTHO05D006344 4.5e-20 101.3 57 87.7
Rhsim02G0238200 Rhododendron simsii HOM05D000070 ORTHO05D006344 5.8e-20 100.9 57 86.0
vmacro01067 Vaccinium macrocarpon HOM05D000070 ORTHO05D006344 7.6e-20 100.5 57 86.0
vmacro14060 Vaccinium macrocarpon HOM05D000070 ORTHO05D006344 7.6e-20 100.5 57 86.0
Rhsim02G0238000 Rhododendron simsii HOM05D000070 ORTHO05D006344 1.7e-19 99.4 55 85.5
CAN.G707.5 Capsicum annuum HOM05D000070 ORTHO05D006344 2.4e-18 95.5 57 80.7
ClCG05G023650 Citrullus lanatus HOM05D000070 ORTHO05D006344 2.4e-18 95.5 52 86.5
Potri.001G128700 Populus trichocarpa HOM05D000070 ORTHO05D006344 2.4e-18 95.5 68 72.1
Sabra01G0099000 Salix brachista HOM05D000070 ORTHO05D006344 2.4e-18 95.5 68 72.1
CSS0038248 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D033897 5.4e-18 94.4 53 88.7
Prupe.1G288400 Prunus persica HOM05D000070 ORTHO05D006344 5.4e-18 94.4 52 86.5
MSTRG.13451 Avicennia marina HOM05D000070 ORTHO05D006344 7.1e-18 94.0 57 78.9
Peaxi162Scf00175g00320 Petunia axillaris HOM05D000070 ORTHO05D006344 7.1e-18 94.0 56 83.9
COL.COLO4_27870 Corchorus olitorius HOM05D000070 ORTHO05D006344 9.3e-18 93.6 57 77.2
Lj6C778T15 Lonicera japonica HOM05D000070 ORTHO05D006344 1.6e-17 92.8 52 82.7
MD16G1060100 Malus domestica HOM05D000070 ORTHO05D006344 1.6e-17 92.8 52 84.6
Manes.04G050400 Manihot esculenta HOM05D000070 ORTHO05D006344 1.6e-17 92.8 57 77.2
Glyma.02G118800 Glycine max HOM05D000070 ORTHO05D006344 2.1e-17 92.4 51 84.3
Atru.chr11.1617 Acer truncatum HOM05D000070 ORTHO05D006344 2.7e-17 92.0 52 84.6
MELO3C012157.2 Cucumis melo HOM05D000070 ORTHO05D006344 2.7e-17 92.0 52 82.7
SalBow2G1167 Salvia bowleyana HOM05D000113 ORTHO05D006344 2.7e-17 92.0 76 59.2
Nn4g23451 Nelumbo nucifera HOM05D000070 ORTHO05D006344 3.5e-17 91.7 68 66.2
Solyc05g012190.3 Solanum lycopersicum HOM05D000070 ORTHO05D006344 3.5e-17 91.7 57 78.9
Sopen05g007020 Solanum pennellii HOM05D000070 ORTHO05D006344 3.5e-17 91.7 57 78.9
Nitab4.5_0007061g0080 Nicotiana tabacum HOM05D000070 ORTHO05D006344 4.6e-17 91.3 57 77.2
PSO017G7094 Papaver somniferum HOM05D000070 ORTHO05D006344 6.0e-17 90.9 57 75.4
TAR371G0020 Trochodendron aralioides HOM05D000070 ORTHO05D006344 6.0e-17 90.9 57 77.2
GSVIVG01034378001 Vitis vinifera HOM05D000070 ORTHO05D000722 6.0e-17 90.9 52 84.6
QL03p074004 Quercus lobata HOM05D000070 ORTHO05D006344 7.9e-17 90.5 68 69.1
QL03p074454 Quercus lobata HOM05D000070 ORTHO05D006344 7.9e-17 90.5 68 69.1
TAR365G1030 Trochodendron aralioides HOM05D000070 ORTHO05D006344 7.9e-17 90.5 57 77.2
TAR371G0409 Trochodendron aralioides HOM05D000070 ORTHO05D006344 7.9e-17 90.5 57 77.2
CANSAT11G2528 Cannabis sativa HOM05D000070 ORTHO05D006344 1.0e-16 90.1 57 75.4
Nitab4.5_0000231g0160 Nicotiana tabacum HOM05D000070 ORTHO05D006344 1.0e-16 90.1 57 77.2
CSS0009054 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D033897 1.3e-16 89.7 53 84.9
CiPaw.06G092600 Carya illinoinensis HOM05D000070 ORTHO05D006344 1.3e-16 89.7 52 78.8
PGSC0003DMG400028368 Solanum tuberosum HOM05D000070 ORTHO05D006344 1.3e-16 89.7 57 77.2
arahy.Tifrunner.gnm1.ann1.9AW2B2 Arachis hypogaea HOM05D000070 ORTHO05D006344 1.8e-16 89.4 51 80.4
Ciclev10031132m.g Citrus clementina HOM05D000070 ORTHO05D006344 1.8e-16 89.4 52 82.7
Cc00_g25790 Coffea canephora HOM05D000070 ORTHO05D006344 1.8e-16 89.4 52 80.8
Cc03_g11280 Coffea canephora HOM05D000070 ORTHO05D033897 1.8e-16 89.4 52 80.8
PSO478G0742 Papaver somniferum HOM05D000070 ORTHO05D006344 1.8e-16 89.4 57 73.7
PSO478G2435 Papaver somniferum HOM05D000070 ORTHO05D006344 1.8e-16 89.4 57 73.7
Aqoxy2G01115 Aquilegia oxysepala HOM05D000070 ORTHO05D006344 2.3e-16 89.0 82 59.8
Cc11_g11890 Coffea canephora HOM05D000070 ORTHO05D006344 2.3e-16 89.0 52 80.8
CsaV3_5G033370 Cucumis sativus L. HOM05D000070 ORTHO05D006344 2.3e-16 89.0 52 78.8
Duzib251G0829 Durio zibethinus HOM05D000070 ORTHO05D006344 2.3e-16 89.0 57 73.7
ECA234G0905 Erigeron canadensis HOM05D000070 ORTHO05D006344 2.3e-16 89.0 52 80.8
Gohir.A07G005400 Gossypium hirsutum HOM05D000070 ORTHO05D006344 3.0e-16 88.6 52 78.8
Gohir.D07G006600 Gossypium hirsutum HOM05D000070 ORTHO05D006344 3.0e-16 88.6 52 78.8
Gorai.001G006200 Gossypium raimondii HOM05D000070 ORTHO05D006344 3.0e-16 88.6 52 78.8
arahy.Tifrunner.gnm1.ann1.Z90ZKN Arachis hypogaea HOM05D000070 ORTHO05D006344 3.9e-16 88.2 51 80.4
HanXRQChr17g0568381 Helianthus annuus HOM05D000070 ORTHO05D006344 3.9e-16 88.2 52 78.8
Cc03_g11290 Coffea canephora HOM05D000070 ORTHO05D006344 5.1e-16 87.8 52 78.8
Migut.J01072 Erythranthe guttata HOM05D000070 ORTHO05D006344 5.1e-16 87.8 57 71.9
Sed0010273 Sechium edule HOM05D000070 ORTHO05D006344 5.1e-16 87.8 51 82.4
CSS0040639 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D110186 8.7e-16 87.0 45 97.8
CSS0047747 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D110790 8.7e-16 87.0 45 97.8
Hund05835 Selenicereus undatus HOM05D000070 ORTHO05D006344 8.7e-16 87.0 57 73.7
TWI31G0249 Tripterygium wilfordii HOM05D000070 ORTHO05D006344 1.1e-15 86.7 57 73.7
TWI31G0934 Tripterygium wilfordii HOM05D000070 ORTHO05D006344 1.1e-15 86.7 57 73.7
Ah.03g138860 Amaranthus hybridus HOM05D000070 ORTHO05D006344 1.5e-15 86.3 57 73.7
Aqoxy1G00608 Aquilegia oxysepala HOM05D000070 ORTHO05D006344 1.5e-15 86.3 57 70.2
QL03p074523 Quercus lobata HOM05D000070 ORTHO05D006344 1.5e-15 86.3 68 66.2
ATR0177G056 Amborella trichopoda HOM05D000070 ORTHO05D006344 1.9e-15 85.9 69 65.2
DCAR_030045 Daucus carota HOM05D000070 ORTHO05D006344 1.9e-15 85.9 67 62.7
FvH4_4g29870 Fragaria vesca HOM05D000070 ORTHO05D006344 1.9e-15 85.9 52 76.9
FAN07G2606 Fragaria x ananassa HOM05D000070 ORTHO05D006344 1.9e-15 85.9 52 76.9
FAN12G0985 Fragaria x ananassa HOM05D000070 ORTHO05D006344 1.9e-15 85.9 52 76.9
FAN17G0562 Fragaria x ananassa HOM05D000070 ORTHO05D006344 1.9e-15 85.9 52 76.9
Lsat_1_v5_gn_4_11741 Lactuca sativa HOM05D000070 ORTHO05D006344 1.9e-15 85.9 57 70.2
RcHm_v2.0_Chr4g0438121 Rosa chinensis HOM05D000070 ORTHO05D006344 2.5e-15 85.5 52 78.8
Haze_11898 Corylus avellana HOM05D000070 ORTHO05D006344 3.3e-15 85.1 68 64.7
VMungo1215G2913 Vigna mungo HOM05D000070 ORTHO05D006344 3.3e-15 85.1 51 76.5
FAN22G1193 Fragaria x ananassa HOM05D000070 ORTHO05D006344 4.3e-15 84.7 52 76.9
EL10Ac6g15010 Beta vulgaris HOM05D000070 ORTHO05D006344 5.6e-15 84.3 57 71.9
Phvul.003G041700 Phaseolus vulgaris HOM05D000070 ORTHO05D006344 5.6e-15 84.3 51 76.5
QL03p073969 Quercus lobata HOM05D000070 ORTHO05D006344 5.6e-15 84.3 68 66.2
Thecc.02G329400 Theobroma cacao HOM05D000070 ORTHO05D006344 5.6e-15 84.3 57 71.9
CSS0018364 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D113106 7.4e-15 84.0 45 95.6
PGR119G0539 Punica granatum HOM05D000070 ORTHO05D006344 9.6e-15 83.6 57 70.2
Cfa008871 Carpinus fangiana HOM05D000070 ORTHO05D006344 1.3e-14 83.2 68 64.7
Ca_08367_v3 Cicer arietinum L. HOM05D000070 ORTHO05D006344 1.3e-14 83.2 51 74.5
SGA_v2.0_scaffold257G45707 Striga asiatica HOM05D000070 ORTHO05D006344 1.3e-14 83.2 57 66.7
AUR62003090 Chenopodium quinoa HOM05D000070 ORTHO05D006344 1.6e-14 82.8 52 75.0
Thhalv10003859m.g Eutrema salsugineum HOM05D000070 ORTHO05D006344 2.1e-14 82.4 57 68.4
Lalb_Chr17g0341241 Lupinus albus HOM05D000070 ORTHO05D006344 2.8e-14 82.0 51 76.5
CDE05G0678 Ceratophyllum demersum HOM05D000070 ORTHO05D006344 3.7e-14 81.6 51 74.5
QL03p073983 Quercus lobata HOM05D000070 ORTHO05D006344 4.8e-14 81.3 68 63.2
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 6.2e-14 80.9 57 66.7
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 6.2e-14 80.9 57 66.7
BolC9t56003H Brassica oleracea HOM05D000070 ORTHO05D006344 6.2e-14 80.9 57 66.7
CARHR146000 Cardamine hirsuta HOM05D000070 ORTHO05D006344 6.2e-14 80.9 99 47.5
AUR62007907 Chenopodium quinoa HOM05D000070 ORTHO05D006344 6.2e-14 80.9 51 74.5
C07p34020 Brassica napus HOM05D005523 ORTHO05D007089 1.1e-13 80.1 84 51.2
BolC7t43916H Brassica oleracea HOM05D005523 ORTHO05D007089 1.1e-13 80.1 84 51.2
Sp2g14350 Schrenkiella parvula HOM05D000070 ORTHO05D006344 1.1e-13 80.1 52 69.2
Carub.0005s0280 Capsella rubella HOM05D000070 ORTHO05D006344 1.4e-13 79.7 57 64.9
Cpa.g.sc1.136 Carica papaya HOM05D000070 ORTHO05D006344 1.4e-13 79.7 57 64.9
A09p24520 Brassica napus HOM05D000070 ORTHO05D006344 1.8e-13 79.3 57 66.7
AL5G13450 Arabidopsis lyrata HOM05D000070 ORTHO05D006344 2.4e-13 79.0 84 50.0
Aa31LG2G7010 Aethionema arabicum HOM05D005523 ORTHO05D007089 3.1e-13 78.6 57 63.2
THA.LOC104801824 Tarenaya hassleriana HOM05D000070 ORTHO05D006344 3.1e-13 78.6 57 64.9
Lj1g0014852 Lotus japonicus HOM05D000070 ORTHO05D006344 4.0e-13 78.2 51 72.5
AT2G03670 Arabidopsis thaliana HOM05D000070 ORTHO05D006344 5.3e-13 77.8 57 63.2
Medtr7g088980 Medicago truncatula HOM05D000070 ORTHO05D006344 6.9e-13 77.4 57 63.2
TPR.G22677 Trifolium pratense HOM05D000070 ORTHO05D006344 6.9e-13 77.4 51 70.6
BcaB07g30661 Brassica carinata HOM05D005523 ORTHO05D007089 1.2e-12 76.6 57 63.2
Psat3g081320 Pisum sativum HOM05D000070 ORTHO05D006344 1.2e-12 76.6 84 48.8
BcaC06g31164 Brassica carinata HOM05D005523 ORTHO05D006344 1.5e-12 76.3 84 48.8
Zm00001eb425850 Zea mays HOM05D000070 ORTHO05D006344 1.5e-12 76.3 68 57.4
Eucgr.G02441 Eucalyptus grandis HOM05D000070 ORTHO05D006344 2.0e-12 75.9 51 70.6
MBI19_g41556_MAGBIO Magnolia biondii HOM05D000070 ORTHO05D006344 5.8e-12 74.3 57 61.4
SEGI_05577 Sequoiadendron giganteum HOM05D000070 ORTHO05D006344 3.8e-11 71.6 51 66.7
HPP92_006114 Vanilla planifolia HOM05D000070 ORTHO05D006344 3.8e-11 71.6 68 54.4
Actinidia33245 Actinidia chinensis HOM05D002141 ORTHO05D002119 4.9e-11 71.2 34 97.1
SMO147G0197 Selaginella moellendorffii HOM05D000070 ORTHO05D006344 8.4e-11 70.5 52 69.2
Medtr7g088850 Medicago truncatula HOM05D000070 ORTHO05D006344 3.2e-10 68.6 55 60.0
CBR_g54905 Chara braunii HOM05D000019 ORTHO05D000002 2.1e-09 65.9 63 50.8
Os04g0498800 Oryza sativa ssp. japonica HOM05D000070 ORTHO05D006344 7.9e-09 63.9 59 57.6
Actinidia28631 Actinidia chinensis HOM05D000070 ORTHO05D006344 1.0e-08 63.5 48 68.8
AagrBONN_evm.TU.Sc2ySwM_362.1946 Anthoceros agrestis HOM05D000070 ORTHO05D006344 5.1e-08 61.2 76 43.4
Mapoly0149s0015 Marchantia polymorpha HOM05D000070 ORTHO05D006344 8.7e-08 60.5 72 44.4
Pp3c21_20700 Physcomitrium patens HOM05D000070 ORTHO05D006344 1.1e-07 60.1 54 51.9
PRCOL_00005146 Prasinoderma coloniale HOM05D000070 ORTHO05D006344 1.9e-07 59.3 71 45.1
Aa31LG10G14780 Aethionema arabicum HOM05D000070 ORTHO05D007358 2.8e-06 55.5 68 36.8
CBR_g3187 Chara braunii HOM05D000070 ORTHO05D000002 4.8e-06 54.7 52 46.2
PGR142G2226 Punica granatum HOM05D000070 ORTHO05D007358 4.8e-06 54.7 68 38.2
Psat3g081080 Pisum sativum HOM05D000070 ORTHO05D007358 8.2e-06 53.9 67 34.3


User provided reference genes

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