Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 0.0e+00 1147.1 599 100.0
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 1.3e-305 1052.4 599 89.1
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 3.3e-304 1047.7 599 90.7
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 1.2e-301 1039.3 599 90.2
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 7.7e-301 1036.6 596 89.9
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 6.3e-295 1016.9 599 88.8
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 6.3e-295 1016.9 599 88.8
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 7.9e-290 1000.0 591 86.3
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 1.8e-281 972.2 599 83.6
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 7.4e-280 966.8 597 83.8
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 1.7e-279 965.7 600 84.2
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 4.8e-279 964.1 597 83.1
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 2.4e-278 961.8 597 82.4
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 2.4e-278 961.8 597 82.9
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 7.0e-278 960.3 597 81.9
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 9.1e-278 959.9 597 82.2
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 1.2e-277 959.5 597 82.2
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 7.7e-277 956.8 597 82.4
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 7.7e-277 956.8 597 82.2
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 1.1e-275 953.0 597 82.2
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 2.7e-274 948.3 599 81.5
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 2.0e-272 942.2 597 81.6
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 7.5e-272 940.3 598 82.6
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 2.8e-271 938.3 600 81.3
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 6.3e-271 937.2 597 81.1
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 6.3e-271 937.2 597 80.7
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 7.0e-270 933.7 602 82.1
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 1.2e-269 932.9 597 79.1
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 1.6e-269 932.6 590 81.7
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 2.7e-269 931.8 596 79.9
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 4.5e-269 931.0 597 81.1
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 6.5e-268 927.2 597 80.6
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 6.5e-268 927.2 597 81.1
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 9.4e-267 923.3 597 81.2
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 2.1e-266 922.2 600 80.8
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 4.7e-266 921.0 597 78.6
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 6.1e-266 920.6 597 79.9
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 8.0e-266 920.2 599 78.8
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 2.3e-265 918.7 597 80.2
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 1.2e-264 916.4 597 79.9
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 3.4e-264 914.8 599 78.0
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 1.3e-263 912.9 597 78.2
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 2.8e-263 911.8 597 78.6
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 2.8e-263 911.8 601 79.5
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 6.3e-263 910.6 598 79.4
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 1.1e-262 909.8 597 78.9
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 1.8e-262 909.1 609 76.4
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 1.8e-262 909.1 599 80.3
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 2.4e-262 908.7 598 79.6
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 7.0e-262 907.1 601 77.2
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 1.2e-261 906.4 600 79.7
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 1.6e-261 906.0 603 77.4
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 3.5e-261 904.8 603 77.3
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 4.5e-261 904.4 603 77.4
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 1.7e-260 902.5 598 78.9
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 3.3e-259 898.3 608 76.6
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.2e-258 896.3 608 73.4
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 1.6e-258 896.0 599 77.5
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.8e-258 895.2 608 73.2
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 8.0e-258 893.6 598 78.8
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 3.0e-257 891.7 598 77.6
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 4.0e-257 891.3 598 76.4
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 4.4e-256 887.9 601 77.2
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 2.2e-255 885.6 604 76.2
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.4e-254 882.9 604 76.3
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.8e-254 882.5 604 76.3
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.0e-253 879.0 604 76.2
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 7.8e-253 877.1 603 76.6
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 7.8e-253 877.1 600 78.0
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 1.3e-252 876.3 599 75.5
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 2.9e-252 875.2 604 76.3
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 1.5e-251 872.8 611 74.6
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 1.9e-251 872.5 597 79.1
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 2.3e-249 865.5 613 75.4
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 8.9e-249 863.6 600 74.7
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 2.9e-247 858.6 600 73.7
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 2.9e-247 858.6 600 73.7
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 3.7e-247 858.2 606 74.3
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 1.1e-246 856.7 608 72.7
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 1.4e-246 856.3 601 74.0
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 2.4e-246 855.5 599 74.5
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 2.4e-246 855.5 615 72.4
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 7.0e-246 854.0 598 72.7
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 2.7e-245 852.0 606 73.1
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 2.7e-245 852.0 597 74.0
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 2.7e-245 852.0 597 74.0
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 2.7e-245 852.0 597 74.0
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 1.3e-244 849.7 605 73.7
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 2.3e-244 849.0 599 77.1
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 1.9e-243 845.9 607 73.8
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 4.3e-243 844.7 603 73.8
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 1.2e-242 843.2 872 56.7
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 2.8e-242 842.0 604 72.5
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 4.7e-242 841.3 603 72.6
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 4.7e-242 841.3 609 72.2
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 2.0e-240 835.9 596 74.2
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 7.5e-240 833.9 591 72.6
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 8.3e-239 830.5 596 74.0
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 1.4e-238 829.7 608 72.0
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 1.2e-237 826.6 597 70.7
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 2.7e-237 825.5 597 71.0
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 1.0e-236 823.5 596 72.8
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 1.5e-235 819.7 604 71.0
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 1.8e-233 812.8 596 73.3
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 1.8e-233 812.8 597 70.4
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 5.8e-232 807.7 602 71.4
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 1.6e-226 789.6 597 68.7
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 1.6e-226 789.6 644 66.3
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 1.1e-225 786.9 607 68.7
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 2.4e-225 785.8 550 73.8
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 2.9e-223 778.9 551 70.8
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 4.3e-219 765.0 604 68.9
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 6.9e-217 757.7 612 66.8
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 2.2e-215 752.7 612 66.3
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.8e-210 735.7 604 66.4
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.0e-208 729.6 519 78.6
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 2.2e-207 726.1 620 63.9
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 8.4e-207 724.2 599 64.6
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 5.4e-206 721.5 597 66.2
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 5.1e-196 688.3 567 64.9
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 4.8e-186 655.2 477 71.3
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 1.5e-171 607.1 495 67.1
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.1e-169 599.4 600 58.3
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 9.8e-155 551.2 604 52.3
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 2.3e-148 530.0 599 48.2
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 5.9e-144 515.4 603 51.2
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 1.1e-134 484.6 601 50.4
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 2.1e-133 480.3 620 45.2
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 5.4e-129 465.7 590 46.8
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 3.2e-113 413.3 243 87.2
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 9.6e-94 348.6 209 81.3
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.2e-83 315.1 271 66.4
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 3.4e-83 313.5 324 55.6
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 8.7e-79 298.9 627 34.8
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 1.6e-69 268.1 238 65.1
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 1.5e-62 245.0 608 30.9
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 5.0e-50 203.4 147 70.1
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 7.5e-46 189.5 151 65.6
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 4.7e-32 143.7 98 68.4
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 3.0e-31 141.0 201 42.3
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 9.2e-28 129.4 628 24.4
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 2.7e-27 127.9 77 79.2
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 8.0e-24 116.3 215 50.7
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 1.0e-23 115.9 78 67.9
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 8.9e-23 112.8 78 66.7
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 7.8e-19 99.8 115 45.2
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 1.2e-14 85.9 90 50.0
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 6.0e-11 73.6 59 61.0
Sabra10G0126900 Salix brachista HOM05D004853 ORTHO05D005865 8.6e-10 69.7 97 43.3
CAN.G186.63 Capsicum annuum HOM05D004853 ORTHO05D005865 4.4e-06 57.4 45 71.1


User provided reference genes

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