Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034868 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 3.0e-56 221.5 100 100.0
CSS0016713 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 2.7e-49 198.4 91 97.8
Dinv19012 Davidia involucrata HOM05D002996 ORTHO05D003536 2.8e-46 188.3 91 90.1
Peaxi162Scf00003g00013 Petunia axillaris HOM05D002996 ORTHO05D003536 3.6e-46 188.0 93 88.2
Gohir.A08G052700 Gossypium hirsutum HOM05D002996 ORTHO05D003536 4.7e-46 187.6 91 89.0
vmacro05502 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 6.2e-46 187.2 91 87.9
CiPaw.03G068800 Carya illinoinensis HOM05D002996 ORTHO05D003536 8.1e-46 186.8 91 89.0
SGA_v2.0_scaffold13G06389 Striga asiatica HOM05D002996 ORTHO05D003536 8.1e-46 186.8 91 90.1
Rhsim08G0086100 Rhododendron simsii HOM05D002996 ORTHO05D003536 1.1e-45 186.4 91 90.1
COL.COLO4_15722 Corchorus olitorius HOM05D002996 ORTHO05D003536 1.4e-45 186.0 91 89.0
Lj6g0006116 Lotus japonicus HOM05D002996 ORTHO05D003536 1.4e-45 186.0 91 86.8
CAN.G625.86 Capsicum annuum HOM05D002996 ORTHO05D003536 1.8e-45 185.7 91 90.1
Cfa007838 Carpinus fangiana HOM05D002996 ORTHO05D003536 1.8e-45 185.7 91 87.9
Rhsim10G0079400 Rhododendron simsii HOM05D002996 ORTHO05D003536 1.8e-45 185.7 91 90.1
VMungo1383G2581 Vigna mungo HOM05D002996 ORTHO05D003536 1.8e-45 185.7 91 87.9
Solyc02g091410.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 2.3e-45 185.3 91 89.0
Sopen02g036030 Solanum pennellii HOM05D002996 ORTHO05D003536 2.3e-45 185.3 91 89.0
PGSC0003DMG401030647 Solanum tuberosum HOM05D002996 ORTHO05D003536 2.3e-45 185.3 91 89.0
Glyma.18G039000 Glycine max HOM05D002996 ORTHO05D003536 3.1e-45 184.9 91 85.7
Thecc.04G120500 Theobroma cacao HOM05D002996 ORTHO05D003536 4.0e-45 184.5 91 89.0
TAR622G0566 Trochodendron aralioides HOM05D002996 ORTHO05D003536 4.0e-45 184.5 91 86.8
vmacro18050 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 4.0e-45 184.5 91 87.9
Glyma.11G218000 Glycine max HOM05D002996 ORTHO05D003536 5.2e-45 184.1 91 85.7
MSTRG.3518 Avicennia marina HOM05D002996 ORTHO05D003536 8.9e-45 183.3 91 89.0
Cc07_g08150 Coffea canephora HOM05D002996 ORTHO05D003536 8.9e-45 183.3 91 89.0
Gorai.004G064500 Gossypium raimondii HOM05D002996 ORTHO05D003536 8.9e-45 183.3 91 86.8
CSS0002683 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 1.2e-44 183.0 91 87.9
Duzib133G0038 Durio zibethinus HOM05D002996 ORTHO05D003536 1.2e-44 183.0 91 87.9
Gohir.D08G062300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 1.2e-44 183.0 91 86.8
PGR004G1736 Punica granatum HOM05D002996 ORTHO05D003536 1.2e-44 183.0 91 89.0
SalBow7G0652 Salvia bowleyana HOM05D002996 ORTHO05D003536 1.2e-44 183.0 91 87.9
Gohir.A11G162100 Gossypium hirsutum HOM05D002996 ORTHO05D003536 1.5e-44 182.6 91 86.8
Gohir.D11G168300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 1.5e-44 182.6 91 86.8
Manes.01G115900 Manihot esculenta HOM05D002996 ORTHO05D003536 1.5e-44 182.6 91 85.7
Prupe.3G159400 Prunus persica HOM05D002996 ORTHO05D003536 1.5e-44 182.6 91 87.9
Actinidia17657 Actinidia chinensis HOM05D002996 ORTHO05D003536 2.0e-44 182.2 91 87.9
Cpa.g.sc604.6 Carica papaya HOM05D002996 ORTHO05D003536 2.0e-44 182.2 91 87.9
Potri.017G128300 Populus trichocarpa HOM05D002996 ORTHO05D003536 2.0e-44 182.2 91 85.7
Sabra17G0107000 Salix brachista HOM05D002996 ORTHO05D003536 2.0e-44 182.2 91 85.7
TPR.G27148 Trifolium pratense HOM05D002996 ORTHO05D003536 2.0e-44 182.2 91 85.7
arahy.Tifrunner.gnm1.ann1.RDL55E Arachis hypogaea HOM05D002996 ORTHO05D003536 2.6e-44 181.8 91 85.7
Duzib211G0161 Durio zibethinus HOM05D002996 ORTHO05D003536 2.6e-44 181.8 91 86.8
Psat5g122480 Pisum sativum HOM05D002996 ORTHO05D003536 2.6e-44 181.8 91 84.6
ClCG05G010970 Citrullus lanatus HOM05D002996 ORTHO05D003536 3.4e-44 181.4 91 86.8
Ciclev10010941m.g Citrus clementina HOM05D002996 ORTHO05D003536 3.4e-44 181.4 91 87.9
MELO3C020288.2 Cucumis melo HOM05D002996 ORTHO05D003536 3.4e-44 181.4 91 86.8
Lalb_Chr15g0084771 Lupinus albus HOM05D002996 ORTHO05D003536 3.4e-44 181.4 91 84.6
Phvul.001G231700 Phaseolus vulgaris HOM05D002996 ORTHO05D003536 3.4e-44 181.4 91 85.7
GSVIVG01030858001 Vitis vinifera HOM05D002996 ORTHO05D003536 3.4e-44 181.4 91 89.0
AUR62023190 Chenopodium quinoa HOM05D002996 ORTHO05D003536 4.4e-44 181.0 91 85.7
AUR62023237 Chenopodium quinoa HOM05D002996 ORTHO05D003536 4.4e-44 181.0 91 85.7
Ca_08163_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 4.4e-44 181.0 91 83.5
Medtr3g067690 Medicago truncatula HOM05D002996 ORTHO05D003536 4.4e-44 181.0 91 83.5
Nitab4.5_0003360g0070 Nicotiana tabacum HOM05D002996 ORTHO05D003536 5.8e-44 180.6 91 87.9
Haze_14227 Corylus avellana HOM05D002996 ORTHO05D003536 7.5e-44 180.3 91 86.8
Gorai.007G179800 Gossypium raimondii HOM05D002996 ORTHO05D003536 7.5e-44 180.3 91 85.7
Manes.02G074800 Manihot esculenta HOM05D002996 ORTHO05D003536 7.5e-44 180.3 91 85.7
Sed0026936 Sechium edule HOM05D002996 ORTHO05D003536 7.5e-44 180.3 91 86.8
CANSAT78G2389 Cannabis sativa HOM05D002996 ORTHO05D003536 9.9e-44 179.9 91 85.7
CAN.G473.24 Capsicum annuum HOM05D002996 ORTHO05D003536 9.9e-44 179.9 90 87.8
CDE10G0501 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 9.9e-44 179.9 91 86.8
Lj2C435G10 Lonicera japonica HOM05D002996 ORTHO05D003536 1.3e-43 179.5 91 86.8
QL11p004079 Quercus lobata HOM05D002996 ORTHO05D003536 1.3e-43 179.5 91 85.7
Hund16206 Selenicereus undatus HOM05D002996 ORTHO05D003536 1.3e-43 179.5 91 85.7
Oeu000903.1 Olea europaea HOM05D002996 ORTHO05D003536 1.7e-43 179.1 91 86.8
FvH4_5g27890 Fragaria vesca HOM05D002996 ORTHO05D003536 2.9e-43 178.3 91 84.6
FAN18G1791 Fragaria x ananassa HOM05D002996 ORTHO05D003536 2.9e-43 178.3 91 84.6
HanXRQChr07g0193641 Helianthus annuus HOM05D002996 ORTHO05D003536 2.9e-43 178.3 91 83.5
Aqoxy3G00131_Aqoxy3G00132 Aquilegia oxysepala HOM05D002996 ORTHO05D003536 3.7e-43 177.9 91 85.7
MD17G1256700 Malus domestica HOM05D002996 ORTHO05D003536 3.7e-43 177.9 91 84.6
Rhsim10G0079500 Rhododendron simsii HOM05D002996 ORTHO05D003536 3.7e-43 177.9 92 84.8
MSTRG.15319 Avicennia marina HOM05D002996 ORTHO05D003536 4.9e-43 177.6 91 85.7
Nitab4.5_0004399g0040 Nicotiana tabacum HOM05D002996 ORTHO05D003536 4.9e-43 177.6 91 86.8
RcHm_v2.0_Chr7g0220101 Rosa chinensis HOM05D002996 ORTHO05D003536 6.4e-43 177.2 91 84.6
ATR0053G010 Amborella trichopoda HOM05D002996 ORTHO05D003536 8.3e-43 176.8 91 84.6
PSO478G4946 Papaver somniferum HOM05D002996 ORTHO05D003536 8.3e-43 176.8 91 82.4
Atru.chr1.1814 Acer truncatum HOM05D002996 ORTHO05D003536 1.1e-42 176.4 91 84.6
EL10Ac2g04480 Beta vulgaris HOM05D002996 ORTHO05D003536 1.1e-42 176.4 91 84.6
FAN04G0036 Fragaria x ananassa HOM05D002996 ORTHO05D003536 1.1e-42 176.4 91 83.5
Os02g0712000 Oryza sativa ssp. japonica HOM05D002996 ORTHO05D003536 1.1e-42 176.4 91 81.3
ECA232G3169 Erigeron canadensis HOM05D002996 ORTHO05D003536 1.4e-42 176.0 91 83.5
Migut.L00466 Erythranthe guttata HOM05D002996 ORTHO05D003536 1.4e-42 176.0 91 84.6
PSO017G4487 Papaver somniferum HOM05D002996 ORTHO05D003536 1.4e-42 176.0 91 81.3
Aa31LG5G13900 Aethionema arabicum HOM05D002996 ORTHO05D003536 1.9e-42 175.6 91 82.4
BcaC05g30278 Brassica carinata HOM05D002996 ORTHO05D003536 1.9e-42 175.6 91 82.4
BcaC05g30533 Brassica carinata HOM05D002996 ORTHO05D003536 1.9e-42 175.6 91 82.4
A05p43840 Brassica napus HOM05D002996 ORTHO05D003536 1.9e-42 175.6 91 82.4
C05p63430 Brassica napus HOM05D002996 ORTHO05D003536 1.9e-42 175.6 91 82.4
BolC5t35007H Brassica oleracea HOM05D002996 ORTHO05D003536 1.9e-42 175.6 91 82.4
BraA05t23122Z Brassica rapa HOM05D002996 ORTHO05D003536 1.9e-42 175.6 91 82.4
AT3G03380 Arabidopsis thaliana HOM05D002996 ORTHO05D003536 2.4e-42 175.3 91 82.4
Sc10g0000830 Simmondsia chinensis HOM05D002996 ORTHO05D003536 2.4e-42 175.3 91 84.6
CARHR077410 Cardamine hirsuta HOM05D002996 ORTHO05D003536 3.2e-42 174.9 91 82.4
TWI77G0049 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 3.2e-42 174.9 91 83.5
CAN.G11.11 Capsicum annuum HOM05D002996 ORTHO05D003536 4.1e-42 174.5 95 81.1
MBI16_g14303_MAGBIO Magnolia biondii HOM05D002996 ORTHO05D003536 4.1e-42 174.5 91 83.5
SEGI_30841 Sequoiadendron giganteum HOM05D002996 ORTHO05D003536 4.1e-42 174.5 91 82.4
Solyc03g043660.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 4.1e-42 174.5 91 84.6
Sopen03g007520 Solanum pennellii HOM05D002996 ORTHO05D003536 4.1e-42 174.5 91 84.6
DCAR_010737 Daucus carota HOM05D002996 ORTHO05D003536 5.4e-42 174.1 91 82.4
Nitab4.5_0002366g0050 Nicotiana tabacum HOM05D002996 ORTHO05D003536 5.4e-42 174.1 91 84.6
THA.LOC104827237 Tarenaya hassleriana HOM05D002996 ORTHO05D003536 5.4e-42 174.1 91 83.5
vmacro05505 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 5.4e-42 174.1 91 84.6
Ah.16g101290 Amaranthus hybridus HOM05D002996 ORTHO05D003536 7.1e-42 173.7 91 83.5
Thhalv10019951m.g Eutrema salsugineum HOM05D002996 ORTHO05D003536 7.1e-42 173.7 91 81.3
Carub.0003s0254 Capsella rubella HOM05D002996 ORTHO05D003536 9.2e-42 173.3 91 81.3
ECA238G4747 Erigeron canadensis HOM05D002996 ORTHO05D003536 1.2e-41 172.9 91 82.4
Sp3g02390 Schrenkiella parvula HOM05D002996 ORTHO05D003536 1.2e-41 172.9 91 81.3
TWI74G1665 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 1.2e-41 172.9 91 82.4
AL3G13060 Arabidopsis lyrata HOM05D002996 ORTHO05D003536 1.6e-41 172.6 91 80.2
Eucgr.F02825 Eucalyptus grandis HOM05D002996 ORTHO05D003536 1.6e-41 172.6 91 80.2
Nn4g24147 Nelumbo nucifera HOM05D002996 ORTHO05D003536 1.6e-41 172.6 91 81.3
TAR374G0579 Trochodendron aralioides HOM05D002996 ORTHO05D003536 1.6e-41 172.6 91 82.4
Lsat_1_v5_gn_4_154680 Lactuca sativa HOM05D002996 ORTHO05D003536 4.6e-41 171.0 87 82.8
Nitab4.5_0000465g0030 Nicotiana tabacum HOM05D002996 ORTHO05D003536 4.6e-41 171.0 91 83.5
A06p26370 Brassica napus HOM05D002996 ORTHO05D003536 7.8e-41 170.2 91 80.2
BNapus_Darmor_BZH_scaffold_162p00130 Brassica napus HOM05D002996 ORTHO05D003536 7.8e-41 170.2 91 80.2
BNapus_Darmor_BZH_scaffold_78p00120 Brassica napus HOM05D002996 ORTHO05D003536 7.8e-41 170.2 91 80.2
BolC1t05834H Brassica oleracea HOM05D002996 ORTHO05D003536 7.8e-41 170.2 91 80.2
Zm00001eb252510 Zea mays HOM05D002996 ORTHO05D003536 7.8e-41 170.2 91 76.9
HanXRQChr09g0262271 Helianthus annuus HOM05D002996 ORTHO05D003536 1.3e-40 169.5 99 74.7
Peaxi162Scf00118g00223 Petunia axillaris HOM05D002996 ORTHO05D003536 1.7e-40 169.1 91 81.3
SMO361G0084 Selaginella moellendorffii HOM05D002996 ORTHO05D003536 8.6e-40 166.8 91 75.8
BcaC09g47743 Brassica carinata HOM05D002996 ORTHO05D003536 1.1e-39 166.4 91 79.1
Mapoly0003s0272 Marchantia polymorpha HOM05D002996 ORTHO05D003536 1.1e-39 166.4 91 76.9
Potri.004G088600 Populus trichocarpa HOM05D002996 ORTHO05D003536 1.9e-39 165.6 91 78.0
BraA01t04583Z Brassica rapa HOM05D002996 ORTHO05D003536 2.5e-39 165.2 91 78.0
Oeu047419.3 Olea europaea HOM05D002996 ORTHO05D003536 9.5e-39 163.3 130 63.1
Medtr3g067695 Medicago truncatula HOM05D002996 ORTHO05D003536 1.2e-38 162.9 91 76.9
Sabra04G0059000 Salix brachista HOM05D002996 ORTHO05D003536 3.6e-38 161.4 91 74.7
Migut.H00264 Erythranthe guttata HOM05D002996 ORTHO05D003536 4.7e-38 161.0 91 76.9
Manes.01G116000 Manihot esculenta HOM05D002996 ORTHO05D003536 4.7e-38 161.0 91 74.7
Sabra04G0059100 Salix brachista HOM05D002996 ORTHO05D003536 8.1e-38 160.2 91 73.6
PSO339G5742 Papaver somniferum HOM05D002996 ORTHO05D003536 3.1e-37 158.3 90 75.6
SalBow1G7030 Salvia bowleyana HOM05D002996 ORTHO05D003536 2.0e-36 155.6 91 72.5
Pp3c2_7790 Physcomitrium patens HOM05D002996 ORTHO05D003536 2.6e-36 155.2 91 72.5
Potri.004G088700 Populus trichocarpa HOM05D002996 ORTHO05D003536 5.8e-36 154.1 91 71.4
CsaV3_1G027810 Cucumis sativus L. HOM05D002996 ORTHO05D003536 6.4e-35 150.6 91 74.7
Lsat_1_v5_gn_2_81521 Lactuca sativa HOM05D002996 ORTHO05D003536 5.4e-34 147.5 91 74.7
Pp3c1_28480 Physcomitrium patens HOM05D002996 ORTHO05D003536 2.1e-33 145.6 91 70.3
PSO170G1396 Papaver somniferum HOM05D002996 ORTHO05D003536 2.7e-33 145.2 91 69.2
PSO407G0242 Papaver somniferum HOM05D002996 ORTHO05D003536 1.0e-32 143.3 91 70.3
HPP92_003793 Vanilla planifolia HOM05D002996 ORTHO05D003536 1.1e-29 133.3 71 76.1
Ca_17110_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 8.7e-24 113.6 55 87.3
Cre03.g180650 Chlamydomonas reinhardtii HOM05D002996 ORTHO05D003536 5.6e-23 110.9 84 56.0
vmacro05509 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 1.3e-22 109.8 53 90.6
CDE10G1183 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 1.6e-22 109.4 54 87.0
arahy.Tifrunner.gnm1.ann1.GD0F1M Arachis hypogaea HOM05D002996 ORTHO05D003536 9.9e-20 100.1 49 85.7
MCO10G011 Micromonas commoda HOM05D002996 ORTHO05D003536 1.0e-16 90.1 79 50.6
Lsat_1_v5_gn_2_24061 Lactuca sativa HOM05D002996 ORTHO05D003536 8.7e-16 87.0 45 77.8
Hma1.2p1_0021F.1_g014340 Hydrangea macrophylla HOM05D003438 ORTHO05D004235 1.5e-07 59.7 32 78.1


User provided reference genes

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