Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 0.0e+00 4880.1 2534 100.0
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 4152.8 2541 84.1
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 4087.0 2542 83.7
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 4074.6 2540 83.3
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 0.0e+00 3881.6 2868 73.3
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 0.0e+00 3767.2 2577 75.8
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 0.0e+00 3753.4 2551 76.1
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 0.0e+00 3740.3 2540 77.1
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3726.8 2554 75.4
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 0.0e+00 3724.1 2545 76.2
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 0.0e+00 3711.0 2544 75.5
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 0.0e+00 3699.1 2553 75.2
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 3691.7 2571 74.7
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 0.0e+00 3686.3 2545 75.2
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 0.0e+00 3685.6 2544 75.4
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 0.0e+00 3675.6 2547 75.3
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 0.0e+00 3664.4 2546 74.5
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 0.0e+00 3652.1 2543 74.1
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 0.0e+00 3644.7 2575 74.1
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 0.0e+00 3640.1 2562 74.6
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 0.0e+00 3630.9 2545 74.5
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3583.5 2551 72.8
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3560.8 2555 72.3
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 0.0e+00 3541.9 2549 72.7
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 0.0e+00 3533.0 2539 72.4
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 0.0e+00 3523.8 2610 72.0
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 0.0e+00 3514.2 2544 72.1
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 0.0e+00 3510.3 2549 72.3
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 0.0e+00 3493.0 2539 71.7
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 0.0e+00 3480.3 2537 72.1
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 0.0e+00 3473.7 2547 71.6
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3467.2 2555 71.5
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 0.0e+00 3461.8 2543 71.6
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 0.0e+00 3450.6 2541 70.7
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 0.0e+00 3448.3 2343 76.9
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 0.0e+00 3442.1 2544 70.8
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 0.0e+00 3442.1 2539 70.7
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 0.0e+00 3430.6 2537 70.5
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 0.0e+00 3429.0 2553 71.0
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 0.0e+00 3394.0 2588 70.2
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 0.0e+00 3391.7 2544 70.1
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3385.9 2564 70.0
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3383.6 2540 70.6
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3380.5 2567 70.1
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 0.0e+00 3371.3 2551 68.5
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 0.0e+00 3341.6 2566 69.6
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 0.0e+00 3336.6 2548 68.3
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 0.0e+00 3294.6 2554 67.9
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 3291.1 2230 76.3
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3253.4 2544 67.4
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 0.0e+00 3238.0 2414 71.3
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 0.0e+00 3194.1 2552 66.8
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 0.0e+00 3165.9 2550 66.0
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 0.0e+00 3160.9 2549 65.9
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 0.0e+00 3159.4 2547 65.9
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 0.0e+00 3147.1 2548 65.7
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 0.0e+00 3146.7 2090 77.8
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 0.0e+00 3145.5 2609 66.2
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 3145.1 2551 66.2
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 3129.7 2550 65.7
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 0.0e+00 3127.8 2547 65.7
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 3096.6 2546 65.1
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 3095.1 2550 65.1
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 3084.3 2545 64.8
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 0.0e+00 3075.4 2578 64.3
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 0.0e+00 3065.8 2572 64.2
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 0.0e+00 3051.2 1875 84.1
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 0.0e+00 3003.8 2577 63.0
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 0.0e+00 2966.4 2237 69.6
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 0.0e+00 2911.7 1891 79.1
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 0.0e+00 2800.8 2039 70.7
VMungo1309G1295 Vigna mungo HOM05D004019 ORTHO05D005136 0.0e+00 2638.2 1736 78.2
Gohir.D05G051300 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2598.9 1646 80.6
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 2451.8 1838 70.0
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 0.0e+00 2410.9 2313 56.9
DCAR_006256 Daucus carota HOM05D004019 ORTHO05D005136 0.0e+00 2338.5 1779 70.5
Oeu063261.5 Olea europaea HOM05D004019 ORTHO05D005136 0.0e+00 2335.5 1728 72.5
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2314.7 1739 70.2
unitig_747.g21875 Utricularia gibba HOM05D004019 ORTHO05D005136 0.0e+00 2127.1 1695 66.4
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 0.0e+00 2119.4 2722 46.4
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 0.0e+00 2102.4 2784 45.5
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1966.8 1191 84.0
Hma1.2p1_0140F.1_g063770 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1889.8 1181 83.4
Solyc08g068010.2 Solanum lycopersicum HOM05D004019 ORTHO05D005136 0.0e+00 1755.3 1145 79.7
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 0.0e+00 1703.0 2561 41.8
Ah.12g060340 Amaranthus hybridus HOM05D004019 ORTHO05D005136 0.0e+00 1693.7 1424 65.2
Cpa.g.sc205.26 Carica papaya HOM05D004019 ORTHO05D005136 0.0e+00 1686.0 1098 79.2
vmacro08818 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 0.0e+00 1680.6 1161 78.0
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1615.1 1499 59.5
Peaxi162Scf00105g00818 Petunia axillaris HOM05D004019 ORTHO05D005136 0.0e+00 1604.0 1143 74.9
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 0.0e+00 1498.8 2534 39.2
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1478.0 1630 51.9
AagrBONN_evm.TU.Sc2ySwM_340.130 Anthoceros agrestis HOM05D004019 ORTHO05D005136 0.0e+00 1447.6 2680 37.1
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1444.9 1490 55.3
FAN20G1524 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 1420.6 853 83.8
SEGI_05898 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 0.0e+00 1415.2 1192 63.9
HPP92_006443 Vanilla planifolia HOM05D004019 ORTHO05D005136 0.0e+00 1355.5 1179 63.0
Gohir.A05G049350 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 1241.1 744 83.6
CDE10G0547 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1235.3 900 68.8
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 0.0e+00 1193.3 1032 64.6
vmacro11105 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 0.0e+00 1106.3 672 85.9
Haze_21654 Corylus avellana HOM05D004019 ORTHO05D005136 4.2e-292 1009.6 609 85.4
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 7.0e-287 992.3 1126 50.6
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 4.0e-258 896.7 909 54.9
SHI11646 Sapria himalayana HOM05D004019 ORTHO05D000023 3.9e-253 880.2 1047 49.6
Haze_21655 Corylus avellana HOM05D004019 ORTHO05D005136 8.6e-253 879.0 654 71.6
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 1.1e-244 852.0 903 53.2
QL12p030952 Quercus lobata HOM05D004019 ORTHO05D005136 9.0e-210 736.1 736 58.6
Solyc08g068040.3 Solanum lycopersicum HOM05D004019 ORTHO05D005136 7.9e-206 723.0 666 58.7
Peaxi162Scf00105g00812 Petunia axillaris HOM05D004019 ORTHO05D005136 4.3e-204 717.2 664 58.4
Nitab4.5_0000250g0120 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.3e-203 715.7 842 53.0
Cpa.g.sc205.24 Carica papaya HOM05D004019 ORTHO05D005136 1.0e-197 696.0 500 73.0
vmacro11103 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 1.5e-188 665.6 553 66.2
SHI11647 Sapria himalayana HOM05D004019 ORTHO05D005136 6.1e-182 643.7 863 44.5
Peaxi162Scf00105g00817 Petunia axillaris HOM05D004019 ORTHO05D005136 2.2e-179 635.2 493 66.3
ClCG05G017320 Citrullus lanatus HOM05D004019 ORTHO05D005136 2.8e-179 634.8 677 52.6
Nitab4.5_0002393g0010 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.2e-177 629.4 385 82.3
Hund02996 Selenicereus undatus HOM05D004019 ORTHO05D005136 1.2e-177 629.4 613 60.4
DCAR_006255 Daucus carota HOM05D004019 ORTHO05D005136 2.3e-173 615.1 501 68.5
Cpa.g.sc205.19 Carica papaya HOM05D004019 ORTHO05D005136 7.7e-169 600.1 491 64.2
SalBow4G2655 Salvia bowleyana HOM05D004019 ORTHO05D005136 6.8e-149 533.9 484 60.5
SEGI_01785 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 3.3e-127 461.8 517 50.1
Os01g0593000 Oryza sativa ssp. japonica HOM05D004019 ORTHO05D005136 2.2e-115 422.5 264 76.1
vmacro11104 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 1.2e-113 416.8 239 90.8
Hma1.2p1_0140F.1_g063780 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 1.3e-96 360.1 204 91.7
unitig_747.g21874 Utricularia gibba HOM05D004019 ORTHO05D005136 3.0e-96 359.0 347 55.0
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 6.3e-94 351.3 233 79.0
Nitab4.5_0000250g0090 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.2e-91 342.8 180 91.7
Ah.12g060330 Amaranthus hybridus HOM05D004019 ORTHO05D005136 2.4e-85 322.8 180 85.6
Haze_21653 Corylus avellana HOM05D004019 ORTHO05D005136 3.8e-83 315.5 219 72.1
Cfa013229 Carpinus fangiana HOM05D004019 ORTHO05D005136 3.6e-81 308.9 207 74.4
DCAR_006257 Daucus carota HOM05D004019 ORTHO05D005136 3.8e-75 288.9 151 94.0
SEGI_29718 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 4.0e-72 278.9 158 83.5
Cpa.g.sc205.16 Carica papaya HOM05D004019 ORTHO05D005136 1.1e-69 270.8 315 49.8
Cc00_g31360 Coffea canephora HOM05D004019 ORTHO05D005136 2.4e-69 269.6 308 50.0
SHI11644 Sapria himalayana HOM05D004019 ORTHO05D000014 2.9e-67 262.7 286 52.8
Cc08_g08730 Coffea canephora HOM05D000021 ORTHO05D000010 1.4e-64 253.8 309 50.2
DCAR_006254 Daucus carota HOM05D004019 ORTHO05D005136 7.5e-63 248.1 306 49.0
Nitab4.5_0000250g0100 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.2e-55 224.2 338 43.8
unitig_747.g21873 Utricularia gibba HOM05D004019 ORTHO05D005136 5.6e-50 205.3 310 42.9
PRCOL_00001920 Prasinoderma coloniale HOM05D004019 ORTHO05D005136 7.3e-50 204.9 2180 22.7
SHI11640 Sapria himalayana HOM05D004019 ORTHO05D000023 1.8e-45 190.3 252 42.9
Hma1.2p1_0140F.1_g063800 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 2.0e-39 170.2 116 75.9
Solyc08g068030.1 Solanum lycopersicum HOM05D004019 ORTHO05D005136 1.3e-38 167.5 143 60.8
HanXRQChr03g0075941 Helianthus annuus HOM05D004019 ORTHO05D005136 1.9e-37 163.7 105 80.0
AUR62038490 Chenopodium quinoa HOM05D004019 ORTHO05D005136 2.4e-37 163.3 116 76.7
PGR042G0250 Punica granatum HOM05D004019 ORTHO05D005136 8.9e-32 144.8 142 52.1
Oeu022768.1 Olea europaea HOM05D004019 ORTHO05D005136 3.4e-31 142.9 121 62.0
Lsat_1_v5_gn_4_165520 Lactuca sativa HOM05D004019 ORTHO05D005136 2.9e-30 139.8 136 58.8
MD00G1060000 Malus domestica HOM05D004019 ORTHO05D005136 6.6e-27 128.6 101 72.3
MD08G1211900 Malus domestica HOM05D004019 ORTHO05D005136 6.6e-27 128.6 101 72.3
Prupe.5G112400 Prunus persica HOM05D004019 ORTHO05D005136 4.7e-25 122.5 120 57.5
Prupe.5G099400 Prunus persica HOM05D004019 ORTHO05D005136 1.1e-24 121.3 108 63.0
Actinidia14324 Actinidia chinensis HOM05D004019 ORTHO05D005136 3.8e-22 112.8 132 59.1
Actinidia36698 Actinidia chinensis HOM05D004019 ORTHO05D005136 3.0e-19 103.2 123 59.3
Hund02993 Selenicereus undatus HOM05D004019 ORTHO05D000004 3.9e-19 102.8 79 69.6
Medtr3g109982 Medicago truncatula HOM05D000051 ORTHO05D000015 1.9e-18 100.5 214 37.4
Medtr3g108370 Medicago truncatula HOM05D004019 ORTHO05D005136 3.3e-18 99.8 181 39.8
Actinidia31247 Actinidia chinensis HOM05D004019 ORTHO05D005136 8.1e-17 95.1 114 55.3
TPR.G12424 Trifolium pratense HOM05D004019 ORTHO05D005136 2.0e-15 90.5 88 54.5
SHI11643 Sapria himalayana HOM05D004019 ORTHO05D035247 3.4e-15 89.7 81 54.3
Cpa.g.sc205.23 Carica papaya HOM05D004019 ORTHO05D005136 1.3e-14 87.8 73 68.5
FvH4_2g30421 Fragaria vesca HOM05D004019 ORTHO05D035788 3.8e-14 86.3 76 59.2
Haze_21651 Corylus avellana HOM05D004019 ORTHO05D005136 6.4e-14 85.5 45 91.1
Medtr3g107940 Medicago truncatula HOM05D004019 ORTHO05D000015 2.1e-12 80.5 93 50.5
Cc08_g08790 Coffea canephora HOM05D004019 ORTHO05D005136 2.7e-12 80.1 60 68.3
Cc00_g28950 Coffea canephora HOM05D004019 ORTHO05D005136 1.0e-11 78.2 60 70.0
FvH4_2g30290 Fragaria vesca HOM05D004019 ORTHO05D035247 1.0e-11 78.2 67 61.2
FAN24G2522 Fragaria x ananassa HOM05D004019 ORTHO05D035247 1.0e-11 78.2 67 61.2
Potri.018G035601 Populus trichocarpa HOM05D004019 ORTHO05D005136 2.3e-11 77.0 62 62.9
Hund02997 Selenicereus undatus HOM05D004019 ORTHO05D005136 2.3e-11 77.0 48 79.2
Glyma.04G073626 Glycine max HOM05D004019 ORTHO05D005136 3.0e-11 76.6 51 70.6
Actinidia23592 Actinidia chinensis HOM05D004019 ORTHO05D005136 5.1e-11 75.9 55 74.5
Medtr3g110010 Medicago truncatula HOM05D001346 ORTHO05D001205 4.8e-09 69.3 138 36.2
Nitab4.5_0005144g0040 Nicotiana tabacum HOM05D004019 ORTHO05D005136 5.3e-08 65.9 57 59.6
TPR.G26502 Trifolium pratense HOM05D000051 ORTHO05D000015 9.0e-08 65.1 105 46.7
Psat5g042320 Pisum sativum HOM05D000051 ORTHO05D000015 4.5e-07 62.8 82 43.9


User provided reference genes

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