Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034852 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.3e-57 225.3 112 100.0
CSS0048671 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 5.5e-51 204.1 112 92.9
CSS0002973 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.3e-49 198.7 112 91.1
CSS0009827 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.8e-46 189.1 112 85.7
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.5e-37 159.5 87 92.0
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.3e-36 156.4 87 88.5
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.9e-36 155.2 87 89.7
CSS0011657 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.9e-36 155.2 112 75.9
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 1.8e-30 136.0 86 77.9
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 3.4e-29 131.7 86 76.7
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 4.5e-29 131.3 92 71.7
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 3.8e-28 128.3 83 73.5
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 3.3e-24 115.2 85 64.7
Lj5A108T60 Lonicera japonica HOM05D004701 ORTHO05D005220 8.2e-23 110.5 85 64.7
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 3.1e-22 108.6 87 60.9
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 1.6e-21 106.3 86 62.8
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 2.6e-21 105.5 78 66.7
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 3.5e-21 105.1 88 60.2
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 5.9e-21 104.4 85 58.8
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 1.0e-20 103.6 84 58.3
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 1.0e-20 103.6 84 58.3
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 1.3e-20 103.2 77 64.9
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 2.2e-20 102.4 83 59.0
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 3.8e-20 101.7 83 61.4
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 5.0e-20 101.3 83 61.4
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 8.5e-20 100.5 84 57.1
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 1.5e-19 99.8 85 58.8
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 3.2e-19 98.6 76 65.8
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 7.2e-19 97.4 83 56.6
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 1.2e-18 96.7 76 59.2
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 2.7e-18 95.5 79 54.4
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 3.6e-18 95.1 93 50.5
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 6.1e-18 94.4 83 57.8
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 1.0e-17 93.6 83 56.6
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 1.0e-17 93.6 83 56.6
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 1.0e-17 93.6 83 56.6
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 1.0e-17 93.6 80 56.2
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 3.0e-17 92.0 87 49.4
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 3.0e-17 92.0 77 53.2
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 4.0e-17 91.7 79 60.8
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 5.2e-17 91.3 83 53.0
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 6.7e-17 90.9 79 58.2
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 3.3e-16 88.6 84 50.0
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 5.7e-16 87.8 87 49.4
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 1.3e-15 86.7 83 49.4
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 1.7e-15 86.3 87 48.3
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 2.2e-15 85.9 93 49.5
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 2.8e-15 85.5 89 49.4
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 4.8e-15 84.7 85 47.1
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 6.3e-15 84.3 87 43.7
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 1.1e-14 83.6 81 53.1
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 1.1e-14 83.6 92 44.6
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 1.4e-14 83.2 83 53.0
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 1.4e-14 83.2 87 49.4
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 1.8e-14 82.8 87 49.4
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 5.3e-14 81.3 89 43.8
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 5.3e-14 81.3 81 56.8
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 5.3e-14 81.3 90 51.1
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 1.2e-13 80.1 87 48.3
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 1.6e-13 79.7 85 45.9
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 2.0e-13 79.3 86 50.0
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 2.0e-13 79.3 91 48.4
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 2.7e-13 79.0 80 50.0
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 4.5e-13 78.2 84 44.0
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 4.5e-13 78.2 83 51.8
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 4.5e-13 78.2 85 41.2
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 7.7e-13 77.4 85 48.2
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.3e-12 76.6 87 44.8
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 5.0e-12 74.7 89 40.4
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 6.5e-12 74.3 81 50.6
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 6.5e-12 74.3 89 40.4
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 8.5e-12 73.9 87 43.7
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 1.1e-11 73.6 76 52.6
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 3.2e-11 72.0 78 48.7
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 4.2e-11 71.6 72 47.2
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 5.5e-11 71.2 83 48.2
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 7.2e-11 70.9 102 38.2
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 7.2e-11 70.9 77 48.1
SGA_v2.0_scaffold313G48342 Striga asiatica HOM05D004701 ORTHO05D005220 9.4e-11 70.5 81 48.1
arahy.Tifrunner.gnm1.ann1.4DD1B6 Arachis hypogaea HOM05D004701 ORTHO05D005220 1.2e-10 70.1 77 48.1
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 1.2e-10 70.1 77 48.1
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 1.2e-10 70.1 83 45.8
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 3.6e-10 68.6 81 44.4
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 6.1e-10 67.8 72 45.8
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 1.0e-09 67.0 80 45.0
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 1.4e-09 66.6 95 36.8
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 1.8e-09 66.2 79 44.3
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 1.8e-09 66.2 81 44.4
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 1.8e-09 66.2 81 46.9
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 2.3e-09 65.9 72 48.6
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 3.0e-09 65.5 81 43.2
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 1.5e-08 63.2 77 48.1
Oeu052446.1 Olea europaea HOM05D004701 ORTHO05D005220 2.0e-08 62.8 85 38.8
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 2.6e-08 62.4 79 43.0
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 3.4e-08 62.0 83 43.4
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 3.4e-08 62.0 82 45.1
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 9.8e-08 60.5 74 41.9
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 9.8e-08 60.5 76 39.5
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 2.8e-07 58.9 72 43.1
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 3.7e-07 58.5 81 44.4
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 4.8e-07 58.2 72 41.7
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 4.8e-07 58.2 72 41.7
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 4.8e-07 58.2 72 41.7
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 3.1e-06 55.5 83 34.9


User provided reference genes

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