Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034823 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 1.4e-170 602.8 287 100.0
CSS0000460 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 5.7e-153 544.3 272 95.2
Dinv41413 Davidia involucrata HOM05D004232 ORTHO05D004909 9.3e-95 350.9 242 71.9
vmacro21873 Vaccinium macrocarpon HOM05D004232 ORTHO05D004909 1.2e-94 350.5 276 63.0
Rhsim01G0048900 Rhododendron simsii HOM05D004232 ORTHO05D004909 3.3e-92 342.4 276 61.2
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 3.4e-89 332.4 274 63.9
Dinv42900 Davidia involucrata HOM05D004232 ORTHO05D004909 3.4e-89 332.4 244 66.4
Dinv43201 Davidia involucrata HOM05D004232 ORTHO05D004909 3.4e-89 332.4 244 66.4
Rhsim01G0048700 Rhododendron simsii HOM05D004232 ORTHO05D004909 4.5e-89 332.0 272 61.0
Rhsim01G0048600 Rhododendron simsii HOM05D004232 ORTHO05D004909 7.6e-89 331.3 272 61.0
Rhsim01G0048800 Rhododendron simsii HOM05D004232 ORTHO05D004909 2.4e-87 326.2 272 59.9
Actinidia04270 Actinidia chinensis HOM05D004232 ORTHO05D004909 6.2e-83 311.6 238 66.4
Peaxi162Scf00113g00410 Petunia axillaris HOM05D004232 ORTHO05D004909 2.5e-79 299.7 284 54.6
Lj9A711T51 Lonicera japonica HOM05D004232 ORTHO05D004909 1.6e-78 297.0 282 56.0
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 6.0e-78 295.0 279 53.8
CiPaw.15G171200 Carya illinoinensis HOM05D004232 ORTHO05D004909 6.7e-77 291.6 279 54.8
Sc08g0005080 Simmondsia chinensis HOM05D004232 ORTHO05D004909 4.3e-76 288.9 283 53.0
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 5.6e-76 288.5 292 53.4
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 6.2e-75 285.0 299 49.2
Manes.06G039700 Manihot esculenta HOM05D004232 ORTHO05D004909 8.2e-75 284.6 296 50.0
QL02p091766 Quercus lobata HOM05D004232 ORTHO05D004909 8.2e-75 284.6 279 52.3
Nitab4.5_0000059g0500 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.4e-74 283.9 289 52.2
Sopen02g003100 Solanum pennellii HOM05D004232 ORTHO05D004909 6.9e-74 281.6 277 53.1
Eucgr.C00403 Eucalyptus grandis HOM05D004232 ORTHO05D004909 9.0e-74 281.2 292 50.3
Nitab4.5_0000700g0080 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.2e-73 280.8 286 52.1
Potri.018G112500 Populus trichocarpa HOM05D004232 ORTHO05D004909 1.2e-73 280.8 298 49.3
Solyc02g014460.4 Solanum lycopersicum HOM05D004232 ORTHO05D004909 1.5e-73 280.4 277 52.7
MSTRG.26306 Avicennia marina HOM05D004232 ORTHO05D004909 2.2e-72 276.6 284 50.7
Gohir.D06G096600 Gossypium hirsutum HOM05D004232 ORTHO05D004909 2.9e-72 276.2 324 45.4
Gorai.010G111300 Gossypium raimondii HOM05D004232 ORTHO05D004909 2.9e-72 276.2 324 45.4
PGSC0003DMG400023181 Solanum tuberosum HOM05D004232 ORTHO05D004909 8.4e-72 274.6 276 52.5
Nn2g12267 Nelumbo nucifera HOM05D004232 ORTHO05D004909 4.2e-71 272.3 213 63.4
Gohir.A06G096400 Gossypium hirsutum HOM05D004232 ORTHO05D004909 2.7e-70 269.6 324 44.8
Thecc.09G036600 Theobroma cacao HOM05D004232 ORTHO05D004909 7.9e-70 268.1 321 46.4
Migut.K00358 Erythranthe guttata HOM05D004232 ORTHO05D004909 8.7e-69 264.6 284 50.0
ECA236G3428 Erigeron canadensis HOM05D004232 ORTHO05D004909 1.1e-68 264.2 271 50.9
CsaV3_1G028610 Cucumis sativus L. HOM05D004232 ORTHO05D004909 4.3e-68 262.3 323 47.1
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 9.7e-68 261.2 279 47.7
Sabra18G0095700 Salix brachista HOM05D004232 ORTHO05D004909 1.3e-67 260.8 259 49.8
Cc06_g23430 Coffea canephora HOM05D004232 ORTHO05D004909 1.6e-67 260.4 276 48.6
FAN26G2384 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.6e-67 260.4 285 46.7
Nn8g39758 Nelumbo nucifera HOM05D004232 ORTHO05D004909 1.6e-67 260.4 179 65.9
Sed0012168 Sechium edule HOM05D004232 ORTHO05D004909 6.3e-67 258.5 310 46.5
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 6.3e-67 258.5 321 44.2
Lsat_1_v5_gn_8_77581 Lactuca sativa HOM05D004232 ORTHO05D004909 8.2e-67 258.1 185 63.2
MELO3C010252.2 Cucumis melo HOM05D004232 ORTHO05D004909 1.1e-66 257.7 325 44.3
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 1.4e-66 257.3 178 66.3
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 2.4e-66 256.5 304 45.1
DCAR_019365 Daucus carota HOM05D004232 ORTHO05D004909 2.4e-66 256.5 285 48.8
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 2.4e-66 256.5 305 46.2
FAN28G1469 Fragaria x ananassa HOM05D004232 ORTHO05D004909 4.1e-66 255.8 286 45.8
Glyma.17G103900 Glycine max HOM05D004232 ORTHO05D004909 5.3e-66 255.4 272 49.3
FvH4_1g01460 Fragaria vesca HOM05D004232 ORTHO05D004909 6.9e-66 255.0 283 45.9
Cc06_g23400 Coffea canephora HOM05D004232 ORTHO05D004909 1.5e-65 253.8 274 48.2
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 3.4e-65 252.7 316 44.6
RcHm_v2.0_Chr2g0086391 Rosa chinensis HOM05D004232 ORTHO05D004909 3.4e-65 252.7 285 46.0
FAN19G1911 Fragaria x ananassa HOM05D004232 ORTHO05D004909 4.5e-65 252.3 289 44.6
Lalb_Chr07g0179621 Lupinus albus HOM05D004232 ORTHO05D004909 5.9e-65 251.9 300 46.0
TWI34G2022 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 1.0e-64 251.1 205 57.1
PGR142G1232 Punica granatum HOM05D004232 ORTHO05D004909 1.3e-64 250.8 203 59.1
Ciclev10007957m.g Citrus clementina HOM05D004232 ORTHO05D004909 2.2e-64 250.0 205 55.1
Thhalv10018400m.g Eutrema salsugineum HOM05D004232 ORTHO05D004909 2.2e-64 250.0 277 47.7
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 3.8e-64 249.2 272 45.6
THA.LOC104808932 Tarenaya hassleriana HOM05D004232 ORTHO05D004909 5.0e-64 248.8 316 44.9
Glyma.13G156300 Glycine max HOM05D004232 ORTHO05D004909 8.5e-64 248.1 299 47.8
ClCG06G012120 Citrullus lanatus HOM05D004232 ORTHO05D004909 1.4e-63 247.3 310 43.5
Sp5g35040 Schrenkiella parvula HOM05D004232 ORTHO05D004909 5.5e-63 245.4 180 65.0
Ca_21603_v3 Cicer arietinum L. HOM05D004232 ORTHO05D004909 1.2e-62 244.2 279 45.9
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 7.9e-62 241.5 278 44.2
FAN23G0432 Fragaria x ananassa HOM05D004232 ORTHO05D004909 2.3e-61 240.0 280 43.9
GSVIVG01001050001 Vitis vinifera HOM05D004232 ORTHO05D004909 3.0e-61 239.6 265 50.9
PSO063G1432 Papaver somniferum HOM05D004232 ORTHO05D004909 3.9e-61 239.2 288 45.5
Glyma.13G156200 Glycine max HOM05D004232 ORTHO05D004909 8.8e-61 238.0 255 48.6
Atru.chr7.187 Acer truncatum HOM05D004232 ORTHO05D004909 1.1e-60 237.7 233 48.9
AT1G80710 Arabidopsis thaliana HOM05D004232 ORTHO05D004909 1.1e-60 237.7 193 59.1
BcaC08g47551 Brassica carinata HOM05D004232 ORTHO05D004909 7.4e-60 235.0 180 63.9
BolC6t40394H Brassica oleracea HOM05D004232 ORTHO05D004909 7.4e-60 235.0 180 63.9
Aa31LG1G2250 Aethionema arabicum HOM05D004232 ORTHO05D004909 1.3e-59 234.2 185 60.0
CARHR073790 Cardamine hirsuta HOM05D004232 ORTHO05D004909 1.3e-59 234.2 178 61.2
AL2G40720 Arabidopsis lyrata HOM05D004232 ORTHO05D004909 2.2e-59 233.4 205 57.6
ECA236G0371 Erigeron canadensis HOM05D004232 ORTHO05D004909 2.8e-59 233.0 189 59.3
COL.COLO4_18748 Corchorus olitorius HOM05D004232 ORTHO05D004909 4.8e-59 232.3 171 61.4
Psat4g032960 Pisum sativum HOM05D004232 ORTHO05D004909 4.8e-59 232.3 281 47.3
BraA07t32003Z Brassica rapa HOM05D004232 ORTHO05D004909 6.3e-59 231.9 176 64.2
BcaC08g47552 Brassica carinata HOM05D004232 ORTHO05D004909 8.2e-59 231.5 223 54.3
C06p53760 Brassica napus HOM05D004232 ORTHO05D004909 1.8e-58 230.3 179 62.0
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 2.4e-58 229.9 197 55.3
A07p44980 Brassica napus HOM05D004232 ORTHO05D004909 4.1e-58 229.2 177 63.3
HanXRQChr05g0141511 Helianthus annuus HOM05D004232 ORTHO05D004909 4.1e-58 229.2 178 59.6
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 5.3e-58 228.8 299 43.8
Lsat_1_v5_gn_8_59400 Lactuca sativa HOM05D004232 ORTHO05D004909 1.5e-57 227.3 195 56.4
Lj4g0017422 Lotus japonicus HOM05D004232 ORTHO05D004909 1.5e-57 227.3 277 44.8
BolC6t40395H Brassica oleracea HOM05D004232 ORTHO05D004909 3.4e-57 226.1 226 53.5
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 4.5e-57 225.7 298 41.9
Aqoxy7G03504 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 2.9e-56 223.0 175 60.6
Ah.06g190350 Amaranthus hybridus HOM05D004232 ORTHO05D001990 1.4e-55 220.7 291 41.9
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 1.4e-55 220.7 174 59.2
HPP92_023808 Vanilla planifolia HOM05D004232 ORTHO05D004909 1.4e-55 220.7 176 56.2
Carub.0002s2684 Capsella rubella HOM05D004232 ORTHO05D004909 4.2e-55 219.2 176 59.7
CANSAT11G0555 Cannabis sativa HOM05D004232 ORTHO05D004909 1.0e-53 214.5 176 57.4
Rhsim01G0048400 Rhododendron simsii HOM05D004232 ORTHO05D004909 1.0e-53 214.5 191 57.1
TWI63G0539 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 8.8e-53 211.5 246 46.7
CARHR073800 Cardamine hirsuta HOM05D004232 ORTHO05D004909 2.6e-52 209.9 176 57.4
AUR62000901 Chenopodium quinoa HOM05D004232 ORTHO05D004909 2.4e-50 203.4 177 53.7
Duzib168G1849 Durio zibethinus HOM05D004232 ORTHO05D004909 2.4e-50 203.4 330 39.1
HanXRQChr12g0386031 Helianthus annuus HOM05D004232 ORTHO05D004909 5.3e-50 202.2 193 50.8
BcaC04g22248 Brassica carinata HOM05D004232 ORTHO05D004909 1.2e-49 201.1 185 55.7
C09p21710 Brassica napus HOM05D004232 ORTHO05D004909 1.5e-49 200.7 185 55.1
BolC9t55076H Brassica oleracea HOM05D004232 ORTHO05D004909 1.5e-49 200.7 185 55.1
ATR0629G133 Amborella trichopoda HOM05D004232 ORTHO05D004909 6.5e-48 195.3 281 39.1
Migut.G00058 Erythranthe guttata HOM05D004232 ORTHO05D004909 1.1e-47 194.5 253 42.3
ATR0629G116 Amborella trichopoda HOM05D004232 ORTHO05D004909 1.4e-47 194.1 175 50.9
Gorai.010G111100 Gossypium raimondii HOM05D004232 ORTHO05D004909 7.2e-47 191.8 264 41.7
SGA_v2.0_scaffold387G50524 Striga asiatica HOM05D004232 ORTHO05D004909 1.2e-46 191.0 281 39.1
Medtr4g116910 Medicago truncatula HOM05D004232 ORTHO05D004909 1.6e-46 190.7 223 46.2
Os08g0282500 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 6.1e-46 188.7 184 50.5
TPR.G15793 Trifolium pratense HOM05D004232 ORTHO05D004909 1.3e-43 181.0 191 49.2
EL10Ac1g00573 Beta vulgaris HOM05D004232 ORTHO05D004909 4.8e-43 179.1 165 49.7
SEGI_24126 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 6.3e-43 178.7 279 34.4
Oeu051700.1 Olea europaea HOM05D004232 ORTHO05D004909 8.2e-43 178.3 308 39.3
Zm00001eb028210 Zea mays HOM05D004232 ORTHO05D004909 2.6e-41 173.3 212 45.3
Nitab4.5_0011109g0010 Nicotiana tabacum HOM05D004232 ORTHO05D004909 2.9e-40 169.9 176 47.7
ECA234G1449 Erigeron canadensis HOM05D004232 ORTHO05D004909 5.0e-40 169.1 178 46.6
Gohir.D06G096401 Gossypium hirsutum HOM05D004232 ORTHO05D004909 2.5e-39 166.8 264 38.3
SEGI_07783 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 1.2e-38 164.5 176 44.3
Prupe.7G257900 Prunus persica HOM05D004232 ORTHO05D004909 3.0e-37 159.8 313 33.2
Peaxi162Scf00155g00514 Petunia axillaris HOM05D004232 ORTHO05D004909 1.4e-34 151.0 181 43.1
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 7.0e-34 148.7 176 44.3
Cpa.g.sc46.108 Carica papaya HOM05D004232 ORTHO05D004909 4.5e-33 146.0 108 62.0
AUR62005074 Chenopodium quinoa HOM05D004232 ORTHO05D004909 3.8e-32 142.9 175 42.9
QL05p008018 Quercus lobata HOM05D000129 ORTHO05D004909 5.0e-32 142.5 148 50.7
Cpa.g.sc46.107 Carica papaya HOM05D004232 ORTHO05D004909 1.9e-31 140.6 96 66.7
Nitab4.5_0010824g0020 Nicotiana tabacum HOM05D004232 ORTHO05D004909 4.7e-30 136.0 166 42.8
Os08g0285200 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 6.8e-29 132.1 177 41.2
A09p17420 Brassica napus HOM05D004232 ORTHO05D004909 7.5e-28 128.6 185 40.0
QL05p007856 Quercus lobata HOM05D004232 ORTHO05D004909 1.3e-27 127.9 95 66.3
QL05p007882 Quercus lobata HOM05D004232 ORTHO05D004909 9.1e-26 121.7 83 68.7
SMO364G0327 Selaginella moellendorffii HOM05D004232 ORTHO05D004909 5.9e-25 119.0 175 34.3
Nitab4.5_0008408g0040 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.3e-24 117.9 159 43.4
CSS0018310 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 2.9e-24 116.7 191 40.3
CSS0031603 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 2.9e-24 116.7 191 40.3
Ah.12g062460 Amaranthus hybridus HOM05D004232 ORTHO05D004909 6.1e-22 109.0 186 31.7
BraA09t37368Z Brassica rapa HOM05D004232 ORTHO05D004909 8.0e-22 108.6 106 55.7
Nitab4.5_0000660g0030 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.2e-20 104.8 103 48.5
Oeu050464.1 Olea europaea HOM05D004232 ORTHO05D004909 2.4e-18 97.1 76 61.8
ECA236G4659 Erigeron canadensis HOM05D004232 ORTHO05D004909 1.2e-17 94.7 81 59.3
ECA236G3386 Erigeron canadensis HOM05D004232 ORTHO05D004909 4.5e-17 92.8 64 65.6
COL.COLO4_18749 Corchorus olitorius HOM05D004232 ORTHO05D004909 9.5e-15 85.1 196 31.6
C02p46280 Brassica napus HOM05D000783 ORTHO05D000705 2.1e-14 84.0 88 47.7
Glyma.17G103833 Glycine max HOM05D004232 ORTHO05D004909 1.4e-13 81.3 98 45.9
BcaB07g31225 Brassica carinata HOM05D004232 ORTHO05D004909 5.8e-12 75.9 67 55.2
Glyma.17G103767 Glycine max HOM05D004232 ORTHO05D004909 9.8e-12 75.1 89 42.7
PRCOL_00000769 Prasinoderma coloniale HOM05D004232 ORTHO05D004909 1.3e-11 74.7 175 26.9
QL05p007971 Quercus lobata HOM05D004232 ORTHO05D004909 9.2e-10 68.6 231 29.0


User provided reference genes

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