Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 3.1e-212 741.5 369 100.0
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 2.1e-152 542.7 375 72.8
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 7.9e-131 471.1 378 65.9
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 3.1e-111 406.0 360 62.5
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 7.2e-108 394.8 347 61.4
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 2.8e-83 313.2 392 46.2
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 1.8e-82 310.5 377 49.3
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 5.2e-82 308.9 390 46.2
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 1.2e-81 307.8 372 49.2
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 8.3e-80 301.6 377 47.7
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 1.8e-74 283.9 377 47.2
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 2.6e-73 280.0 379 44.6
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 8.3e-72 275.0 396 42.2
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 8.3e-72 275.0 379 45.9
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 1.4e-71 274.2 381 43.0
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 2.4e-71 273.5 332 47.0
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 2.4e-71 273.5 369 43.9
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 1.7e-69 267.3 370 43.8
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 3.3e-68 263.1 385 45.5
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 1.5e-65 254.2 375 42.4
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 2.9e-64 250.0 393 42.7
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 4.9e-64 249.2 367 43.6
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 1.2e-62 244.6 366 43.2
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 3.5e-62 243.0 373 42.9
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 6.0e-62 242.3 387 40.1
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 6.6e-61 238.8 375 42.1
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 8.6e-61 238.4 367 43.1
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 2.1e-59 233.8 388 41.8
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 6.2e-59 232.3 361 42.1
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 1.1e-58 231.5 312 48.4
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 1.8e-58 230.7 401 40.1
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 1.8e-58 230.7 401 40.1
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 4.0e-58 229.6 377 40.3
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 3.4e-57 226.5 373 40.2
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 4.4e-57 226.1 375 41.6
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 4.4e-57 226.1 375 41.6
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 5.8e-57 225.7 375 41.9
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 7.6e-57 225.3 378 40.7
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 2.2e-56 223.8 378 40.7
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 4.9e-56 222.6 385 38.7
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 8.3e-56 221.9 371 41.8
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 3.2e-55 219.9 388 40.5
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 5.4e-55 219.2 380 42.1
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 1.2e-54 218.0 382 39.0
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.6e-54 217.6 368 42.1
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 2.3e-53 213.8 171 64.3
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 3.0e-53 213.4 368 39.9
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 3.9e-53 213.0 388 37.9
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 8.6e-53 211.8 355 42.0
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 1.9e-52 210.7 368 40.5
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 2.1e-51 207.2 395 36.2
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 3.6e-51 206.5 389 36.5
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 1.1e-50 204.9 387 37.0
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 1.4e-50 204.5 376 37.8
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 5.2e-50 202.6 375 40.0
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 7.6e-49 198.7 392 34.7
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 4.2e-47 193.0 439 34.2
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 7.1e-47 192.2 356 38.8
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 1.6e-46 191.0 367 37.9
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 1.0e-45 188.3 423 33.6
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 1.7e-45 187.6 368 38.6
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 4.3e-44 183.0 380 33.2
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 7.3e-44 182.2 390 36.7
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 2.1e-43 180.6 367 32.7
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 6.2e-43 179.1 340 39.4
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 3.1e-42 176.8 486 31.1
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 4.0e-42 176.4 363 37.7
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 1.5e-41 174.5 375 34.1
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 1.5e-41 174.5 343 38.2
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 2.6e-41 173.7 165 56.4
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 4.4e-41 172.9 389 33.9
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 7.6e-41 172.2 328 36.3
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 2.2e-40 170.6 375 36.5
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 2.2e-40 170.6 287 39.0
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 8.4e-40 168.7 357 36.4
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 9.3e-39 165.2 229 44.5
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 9.3e-39 165.2 168 50.6
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 1.6e-38 164.5 392 33.2
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 7.8e-38 162.2 360 34.4
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 7.8e-38 162.2 332 38.0
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 3.9e-37 159.8 369 32.8
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 5.1e-37 159.5 370 33.0
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 1.5e-36 157.9 365 32.3
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 1.6e-35 154.5 365 31.8
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 6.2e-35 152.5 364 31.6
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 8.1e-35 152.1 355 35.5
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 8.1e-35 152.1 365 32.1
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 8.1e-35 152.1 365 32.1
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 8.1e-35 152.1 365 32.1
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 8.1e-35 152.1 371 31.5
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 1.8e-34 151.0 365 30.7
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 3.1e-34 150.2 355 35.8
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 3.1e-34 150.2 360 33.6
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 1.5e-33 147.9 368 30.4
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 2.0e-33 147.5 384 35.2
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 2.0e-33 147.5 355 31.0
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 3.4e-33 146.7 407 30.7
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 4.5e-33 146.4 367 34.9
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 4.5e-33 146.4 207 40.6
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 7.6e-33 145.6 368 35.1
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 4.9e-32 142.9 142 50.7
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 7.1e-31 139.0 365 30.1
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 2.1e-30 137.5 210 40.0
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 6.0e-30 136.0 363 33.3
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 7.9e-30 135.6 365 29.3
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 1.0e-29 135.2 143 46.9
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 1.0e-29 135.2 133 54.9
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 1.8e-29 134.4 151 49.7
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 1.8e-29 134.4 151 49.7
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 5.1e-29 132.9 151 47.7
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 6.7e-29 132.5 151 48.3
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 6.7e-29 132.5 151 48.3
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 8.7e-29 132.1 358 32.1
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 3.3e-28 130.2 357 33.9
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 7.4e-28 129.0 368 30.7
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 1.3e-27 128.3 128 50.8
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 3.7e-27 126.7 268 35.1
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 4.8e-27 126.3 347 33.1
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 4.0e-26 123.2 278 31.7
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 4.0e-26 123.2 118 50.8
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 4.0e-26 123.2 118 50.8
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 3.4e-25 120.2 115 55.7
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 6.5e-24 115.9 138 44.9
Lj2C552G1 Lonicera japonica HOM05D005306 ORTHO05D006158 3.2e-23 113.6 212 40.1
Glyma.08G137700 Glycine max HOM05D005306 ORTHO05D006158 1.6e-22 111.3 364 28.3
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 2.7e-22 110.5 284 30.6
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 2.5e-20 104.0 106 50.9
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 1.6e-19 101.3 239 31.0
Hund16271 Selenicereus undatus HOM05D005306 ORTHO05D006158 1.8e-18 97.8 376 29.3
Ah.03g142470 Amaranthus hybridus HOM05D005306 ORTHO05D006158 3.1e-18 97.1 293 31.7
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 2.6e-17 94.0 119 43.7
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 3.4e-17 93.6 168 35.1
ATR0564G355 Amborella trichopoda HOM05D005306 ORTHO05D006158 2.2e-16 90.9 132 42.4
Glyma.05G180000 Glycine max HOM05D005306 ORTHO05D006158 1.9e-15 87.8 359 26.5
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 9.3e-15 85.5 105 46.7
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 6.1e-14 82.8 225 30.2
SGA_v2.0_scaffold34G13602 Striga asiatica HOM05D005306 ORTHO05D006158 6.7e-13 79.3 396 26.5
BcaB02g09865 Brassica carinata HOM05D005306 ORTHO05D006158 8.2e-11 72.4 88 43.2
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 1.8e-10 71.2 129 34.9
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 2.4e-10 70.9 106 37.7
HPP92_004303 Vanilla planifolia HOM05D005306 ORTHO05D006158 1.7e-08 64.7 120 35.0
CDE10G0861 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 4.2e-07 60.1 69 46.4
AagrBONN_evm.TU.Sc2ySwM_344.4066 Anthoceros agrestis HOM05D003400 ORTHO05D003687 1.6e-06 58.2 136 32.4
Nn5g26847 Nelumbo nucifera HOM05D003400 ORTHO05D003687 7.9e-06 55.8 142 28.9


User provided reference genes

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