Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034791 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 2.3e-57 225.3 114 100.0
CSS0043421 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 8.9e-57 223.4 114 99.1
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 5.3e-09 64.7 62 58.1
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 1.5e-08 63.2 65 53.8
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 2.6e-08 62.4 62 56.5
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 3.4e-08 62.0 62 56.5
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 4.5e-08 61.6 55 60.0
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 4.5e-08 61.6 62 56.5
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 5.8e-08 61.2 62 53.2
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 5.8e-08 61.2 65 53.8
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 5.8e-08 61.2 54 59.3
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 7.6e-08 60.8 62 56.5
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 7.6e-08 60.8 63 54.0
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 7.6e-08 60.8 64 53.1
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 9.9e-08 60.5 65 53.8
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 9.9e-08 60.5 62 54.8
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 9.9e-08 60.5 58 58.6
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 9.9e-08 60.5 65 53.8
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 9.9e-08 60.5 54 63.0
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 1.3e-07 60.1 62 53.2
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.3e-07 60.1 62 54.8
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 1.7e-07 59.7 49 67.3
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 1.7e-07 59.7 65 53.8
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 2.2e-07 59.3 62 54.8
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 2.2e-07 59.3 64 53.1
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 2.2e-07 59.3 65 52.3
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 2.9e-07 58.9 58 58.6
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 2.9e-07 58.9 58 56.9
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 2.9e-07 58.9 65 53.8
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 3.8e-07 58.5 50 64.0
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 3.8e-07 58.5 58 56.9
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 4.9e-07 58.2 61 52.5
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 4.9e-07 58.2 62 54.8
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 6.4e-07 57.8 58 56.9
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 8.4e-07 57.4 58 58.6
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 8.4e-07 57.4 58 56.9
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 1.1e-06 57.0 58 56.9
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 1.1e-06 57.0 62 51.6
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 1.1e-06 57.0 65 50.8
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 1.1e-06 57.0 62 51.6
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 1.4e-06 56.6 62 51.6
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 1.4e-06 56.6 53 56.6
TPR.G3034 Trifolium pratense HOM05D004068 ORTHO05D004700 1.4e-06 56.6 58 55.2
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 1.4e-06 56.6 50 64.0
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 2.4e-06 55.8 50 62.0
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 2.4e-06 55.8 50 60.0
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 2.4e-06 55.8 57 57.9
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 3.2e-06 55.5 58 51.7
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 3.2e-06 55.5 50 62.0
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 3.2e-06 55.5 62 50.0
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 3.2e-06 55.5 65 50.8
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 4.2e-06 55.1 57 52.6
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 4.2e-06 55.1 57 52.6
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 4.2e-06 55.1 57 52.6
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 4.2e-06 55.1 62 50.0
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 5.5e-06 54.7 62 50.0
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 7.1e-06 54.3 57 52.6


User provided reference genes

Program Settings