Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034787 Camellia sinensis var. sinensis HOM05D005903 ORTHO05D007293 9.0e-176 620.2 314 100.0
vmacro03560 Vaccinium macrocarpon HOM05D005903 ORTHO05D007293 5.7e-138 494.6 333 77.2
Dinv07001 Davidia involucrata HOM05D005903 ORTHO05D007293 2.5e-133 479.2 314 77.1
Hma1.2p1_0088F.1_g045276 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 8.8e-131 470.7 317 75.1
Dinv26323 Davidia involucrata HOM05D005903 ORTHO05D007293 5.9e-127 458.0 300 76.7
QL11p012010 Quercus lobata HOM05D005903 ORTHO05D007293 1.0e-126 457.2 317 72.2
TAR624G0428 Trochodendron aralioides HOM05D005903 ORTHO05D007293 2.2e-126 456.1 318 73.0
Rhsim05G0003000 Rhododendron simsii HOM05D005903 ORTHO05D007293 5.0e-126 454.9 371 66.8
GSVIVG01012154001 Vitis vinifera HOM05D005903 ORTHO05D007293 8.0e-124 447.6 317 72.9
CiPaw.09G138500 Carya illinoinensis HOM05D005903 ORTHO05D007293 4.0e-123 445.3 312 71.2
Nitab4.5_0010610g0030 Nicotiana tabacum HOM05D005903 ORTHO05D007293 4.0e-123 445.3 317 68.5
Rhsim13G0219000 Rhododendron simsii HOM05D005903 ORTHO05D007293 1.5e-122 443.4 317 73.2
Cpa.g.sc30.99 Carica papaya HOM05D005903 ORTHO05D007293 2.8e-121 439.1 314 71.3
Thecc.02G003100 Theobroma cacao HOM05D005903 ORTHO05D007293 4.8e-121 438.3 315 69.8
Atru.chr10.296 Acer truncatum HOM05D005903 ORTHO05D007293 6.3e-121 438.0 317 70.0
Nitab4.5_0000844g0290 Nicotiana tabacum HOM05D005903 ORTHO05D007293 3.1e-120 435.6 317 66.6
Manes.03G070940 Manihot esculenta HOM05D005903 ORTHO05D007293 1.6e-119 433.3 314 68.8
Potri.001G076200 Populus trichocarpa HOM05D005903 ORTHO05D007293 2.6e-119 432.6 314 69.1
Migut.M02015 Erythranthe guttata HOM05D005903 ORTHO05D007293 1.3e-118 430.3 317 68.5
EL10Ac5g11217 Beta vulgaris HOM05D005903 ORTHO05D007293 1.7e-118 429.9 314 67.5
Eucgr.A00192 Eucalyptus grandis HOM05D005903 ORTHO05D007293 1.1e-117 427.2 316 67.7
Solyc02g081840.4 Solanum lycopersicum HOM05D005903 ORTHO05D007293 1.1e-117 427.2 317 66.9
PGSC0003DMG400007316 Solanum tuberosum HOM05D005903 ORTHO05D007293 1.1e-117 427.2 317 66.9
Migut.G01043 Erythranthe guttata HOM05D005903 ORTHO05D007293 4.2e-117 425.2 310 69.0
Cc09_g05110 Coffea canephora HOM05D005903 ORTHO05D007293 7.2e-117 424.5 316 67.4
Nn7g38356 Nelumbo nucifera HOM05D005903 ORTHO05D007293 7.2e-117 424.5 314 68.8
PGR044G2521 Punica granatum HOM05D005903 ORTHO05D007293 7.2e-117 424.5 315 68.3
CAN.G809.52 Capsicum annuum HOM05D005903 ORTHO05D007293 9.4e-117 424.1 317 65.6
C08p34580 Brassica napus HOM05D005903 ORTHO05D007293 4.7e-116 421.8 314 67.5
Lsat_1_v5_gn_1_24420 Lactuca sativa HOM05D005903 ORTHO05D007293 6.1e-116 421.4 302 69.2
CANSAT35G1866 Cannabis sativa HOM05D005903 ORTHO05D007293 8.0e-116 421.0 321 67.6
BolC3t19474H Brassica oleracea HOM05D005903 ORTHO05D007293 1.4e-115 420.2 314 68.2
BolC8t51059H Brassica oleracea HOM05D005903 ORTHO05D007293 1.8e-115 419.9 314 67.2
Thhalv10011094m.g Eutrema salsugineum HOM05D005903 ORTHO05D007293 3.0e-115 419.1 318 66.0
BcaC01g01793 Brassica carinata HOM05D005903 ORTHO05D007293 4.0e-115 418.7 314 67.8
BcaC07g40489 Brassica carinata HOM05D005903 ORTHO05D007293 4.0e-115 418.7 314 67.2
C03p71840 Brassica napus HOM05D005903 ORTHO05D007293 4.0e-115 418.7 314 67.8
Gohir.A11G047300 Gossypium hirsutum HOM05D005903 ORTHO05D007293 5.2e-115 418.3 311 66.9
BraA06t25085Z Brassica rapa HOM05D005903 ORTHO05D007293 6.8e-115 417.9 319 66.8
FAN16G3015 Fragaria x ananassa HOM05D005903 ORTHO05D007293 6.8e-115 417.9 318 67.0
PSO675G2427 Papaver somniferum HOM05D005903 ORTHO05D007293 6.8e-115 417.9 311 67.5
A06p19990 Brassica napus HOM05D005903 ORTHO05D007293 1.2e-114 417.2 319 66.8
RcHm_v2.0_Chr5g0021241 Rosa chinensis HOM05D005903 ORTHO05D007293 1.5e-114 416.8 318 66.7
AT3G47630 Arabidopsis thaliana HOM05D005903 ORTHO05D007293 2.0e-114 416.4 318 66.0
BraA09t40620Z Brassica rapa HOM05D005903 ORTHO05D007293 5.7e-114 414.8 314 66.2
FAN11G1857 Fragaria x ananassa HOM05D005903 ORTHO05D007293 5.7e-114 414.8 318 66.7
FAN21G0687 Fragaria x ananassa HOM05D005903 ORTHO05D007293 5.7e-114 414.8 318 66.4
Lj4g0014401 Lotus japonicus HOM05D005903 ORTHO05D007293 9.8e-114 414.1 302 67.5
BcaB01g00896 Brassica carinata HOM05D005903 ORTHO05D007293 1.3e-113 413.7 314 66.9
FAN25G2454 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.3e-113 413.7 323 65.6
Gohir.D11G050900 Gossypium hirsutum HOM05D005903 ORTHO05D007293 1.3e-113 413.7 311 66.2
Gorai.007G055300 Gossypium raimondii HOM05D005903 ORTHO05D007293 1.3e-113 413.7 311 66.2
FvH4_3g13050 Fragaria vesca HOM05D005903 ORTHO05D007293 1.7e-113 413.3 318 66.4
CARHR156310 Cardamine hirsuta HOM05D005903 ORTHO05D007293 2.2e-113 412.9 318 65.4
AUR62036920 Chenopodium quinoa HOM05D005903 ORTHO05D007293 2.2e-113 412.9 314 65.9
Cc00_g27340 Coffea canephora HOM05D005903 ORTHO05D007293 2.8e-113 412.5 310 67.4
A09p51850 Brassica napus HOM05D005903 ORTHO05D007293 1.1e-112 410.6 314 65.6
Sp1g31680 Schrenkiella parvula HOM05D005903 ORTHO05D007293 1.1e-112 410.6 320 65.0
DCAR_003756 Daucus carota HOM05D005903 ORTHO05D007293 2.4e-112 409.5 351 59.8
HanXRQChr12g0369311 Helianthus annuus HOM05D005903 ORTHO05D007293 2.4e-112 409.5 310 65.8
Carub.0005s1376 Capsella rubella HOM05D005903 ORTHO05D007293 3.1e-112 409.1 318 64.8
VMungo0251G1440 Vigna mungo HOM05D005903 ORTHO05D007293 3.1e-112 409.1 302 67.2
THA.LOC104812245 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 5.4e-112 408.3 349 61.0
ECA247G0018 Erigeron canadensis HOM05D005903 ORTHO05D007293 7.0e-112 407.9 308 66.6
AL5G26920 Arabidopsis lyrata HOM05D005903 ORTHO05D007293 2.7e-111 406.0 318 64.5
THA.LOC104824626 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 2.7e-111 406.0 349 61.0
MD05G1245400 Malus domestica HOM05D005903 ORTHO05D007293 5.9e-111 404.8 319 65.2
Hma1.2p1_0088F.1_g045273 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 7.7e-111 404.4 331 66.8
Medtr4g094760 Medicago truncatula HOM05D005903 ORTHO05D007293 7.7e-111 404.4 306 64.4
Rhsim07G0106900 Rhododendron simsii HOM05D005903 ORTHO05D007293 1.0e-110 404.1 317 68.8
Aa31LG9G16250 Aethionema arabicum HOM05D005903 ORTHO05D007293 1.3e-110 403.7 318 64.8
Glyma.05G134300 Glycine max HOM05D005903 ORTHO05D007293 3.8e-110 402.1 299 66.2
Ca_18231_v3 Cicer arietinum L. HOM05D005903 ORTHO05D007293 6.5e-110 401.4 302 65.2
Hma1.2p1_1011F.1_g247520 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 6.5e-110 401.4 331 66.2
ClCG01G025750 Citrullus lanatus HOM05D005903 ORTHO05D007293 8.5e-110 401.0 317 63.4
Hund09980 Selenicereus undatus HOM05D005903 ORTHO05D007293 2.5e-109 399.4 360 57.8
MELO3C007010.2 Cucumis melo HOM05D005903 ORTHO05D007293 8.0e-108 394.4 317 61.2
CsaV3_6G052990 Cucumis sativus L. HOM05D005903 ORTHO05D007293 8.0e-108 394.4 317 61.2
Dinv01020 Davidia involucrata HOM05D005903 ORTHO05D007293 1.0e-107 394.0 314 66.6
Glyma.08G089000 Glycine max HOM05D005903 ORTHO05D007293 1.0e-107 394.0 299 65.9
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 8.8e-107 391.0 310 63.9
Sed0025041 Sechium edule HOM05D005903 ORTHO05D007293 3.7e-105 385.6 294 65.0
Ciclev10016117m.g Citrus clementina HOM05D005903 ORTHO05D007293 1.6e-103 380.2 276 69.2
Duzib052G0373 Durio zibethinus HOM05D005903 ORTHO05D007293 2.0e-103 379.8 337 60.2
Sabra01G0053000 Salix brachista HOM05D005903 ORTHO05D007293 6.6e-102 374.8 317 63.4
Aqoxy7G00859 Aquilegia oxysepala HOM05D005903 ORTHO05D007293 3.6e-100 369.0 300 62.0
TWI63G1157 Tripterygium wilfordii HOM05D005903 ORTHO05D007293 3.6e-100 369.0 316 62.0
Psat7g087640 Pisum sativum HOM05D005903 ORTHO05D007293 8.0e-100 367.9 256 67.2
Prupe.7G025500 Prunus persica HOM05D005903 ORTHO05D007293 3.0e-99 365.9 236 75.0
PSO675G2002 Papaver somniferum HOM05D005903 ORTHO05D007293 5.4e-96 355.1 311 58.8
ATR0605G282 Amborella trichopoda HOM05D005903 ORTHO05D007293 3.5e-95 352.4 307 59.9
SGA_v2.0_scaffold31G12765 Striga asiatica HOM05D005903 ORTHO05D007293 4.6e-95 352.1 313 59.7
Lj1C1150G3 Lonicera japonica HOM05D005903 ORTHO05D007293 3.0e-94 349.4 278 64.7
Haze_05254 Corylus avellana HOM05D005903 ORTHO05D007293 6.8e-91 338.2 312 59.6
AUR62032162 Chenopodium quinoa HOM05D005903 ORTHO05D007293 5.8e-90 335.1 260 66.9
arahy.Tifrunner.gnm1.ann1.7A7AL1 Arachis hypogaea HOM05D005903 ORTHO05D007293 9.8e-90 334.3 312 57.1
HPP92_021274 Vanilla planifolia HOM05D005903 ORTHO05D007293 2.0e-87 326.6 308 56.5
Phvul.002G188100 Phaseolus vulgaris HOM05D005903 ORTHO05D007293 5.2e-83 312.0 247 65.2
COL.COLO4_05791 Corchorus olitorius HOM05D005903 ORTHO05D007293 8.9e-83 311.2 194 75.8
SEGI_28167 Sequoiadendron giganteum HOM05D005903 ORTHO05D007293 2.6e-82 309.7 312 53.5
Sopen02g026460 Solanum pennellii HOM05D005903 ORTHO05D007293 3.4e-82 309.3 242 66.5
Peaxi162Scf00036g02217 Petunia axillaris HOM05D005903 ORTHO05D007293 9.2e-80 301.2 281 56.2
Prupe.4G118500 Prunus persica HOM05D005903 ORTHO05D007293 3.5e-79 299.3 228 69.3
CDE06G1059 Ceratophyllum demersum HOM05D005903 ORTHO05D007293 6.0e-79 298.5 318 53.8
Os11g0549650 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 1.2e-76 290.8 221 63.8
Lalb_Chr07g0188231 Lupinus albus HOM05D005903 ORTHO05D007293 2.8e-76 289.7 188 72.3
Zm00001eb201720 Zea mays HOM05D005903 ORTHO05D007293 3.1e-75 286.2 224 62.5
arahy.Tifrunner.gnm1.ann1.STP4KF Arachis hypogaea HOM05D005903 ORTHO05D007293 3.5e-71 272.7 310 49.7
AagrBONN_evm.TU.Sc2ySwM_344.2832 Anthoceros agrestis HOM05D005903 ORTHO05D007293 4.6e-71 272.3 308 50.0
Oeu056062.1 Olea europaea HOM05D005903 ORTHO05D007293 1.0e-70 271.2 165 75.2
SMO367G0859 Selaginella moellendorffii HOM05D005903 ORTHO05D007293 1.9e-69 266.9 319 46.7
Mapoly0019s0171 Marchantia polymorpha HOM05D005903 ORTHO05D007293 1.7e-62 243.8 313 43.1
Pp3c7_4190 Physcomitrium patens HOM05D005903 ORTHO05D007293 5.6e-61 238.8 319 42.9
unitig_46.g18341 Utricularia gibba HOM05D005903 ORTHO05D007293 2.1e-60 236.9 315 47.3
Gohir.D11G050975 Gossypium hirsutum HOM05D005903 ORTHO05D007293 1.7e-54 217.2 170 65.3
Sc04g0004120 Simmondsia chinensis HOM05D005903 ORTHO05D007293 9.6e-53 211.5 123 76.4
Os11g0549690 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 2.4e-51 206.8 152 63.2
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 3.2e-40 169.9 176 48.9
Sc04g0004130 Simmondsia chinensis HOM05D005903 ORTHO05D007293 1.6e-39 167.5 149 64.4
Cfa024540 Carpinus fangiana HOM05D005903 ORTHO05D007293 8.7e-38 161.8 307 34.5
MCO11G061 Micromonas commoda HOM05D005903 ORTHO05D007293 1.1e-35 154.8 328 33.2
Migut.O00470 Erythranthe guttata HOM05D005903 ORTHO05D007293 7.6e-34 148.7 144 57.6
Haze_05249 Corylus avellana HOM05D005903 ORTHO05D007293 6.5e-33 145.6 178 53.4
Cre10.g436900 Chlamydomonas reinhardtii HOM05D005903 ORTHO05D007293 1.3e-30 137.9 301 32.6
PRCOL_00001260 Prasinoderma coloniale HOM05D005903 ORTHO05D007293 2.8e-28 130.2 333 33.3
CARHR106840 Cardamine hirsuta HOM05D005903 ORTHO05D007293 1.4e-22 111.3 114 53.5
Lalb_Chr07g0188221 Lupinus albus HOM05D005903 ORTHO05D007293 5.1e-22 109.4 137 46.7
Glyma.08G193350 Glycine max HOM05D005903 ORTHO05D007293 2.7e-15 87.0 60 71.7
Os05g0295700 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 1.0e-14 85.1 59 57.6
SHI32711 Sapria himalayana HOM05D005903 ORTHO05D007293 1.4e-11 74.7 67 50.7
CAN.G508.15 Capsicum annuum HOM05D005903 ORTHO05D007293 2.6e-10 70.5 48 60.4
CBR_g8146 Chara braunii HOM05D005903 ORTHO05D000048 4.2e-08 63.2 66 50.0


User provided reference genes

Program Settings