Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034779 Camellia sinensis var. sinensis HOM05D004981 ORTHO05D005635 8.4e-211 736.9 402 100.0
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 2.1e-153 546.2 400 77.8
Dinv24195 Davidia involucrata HOM05D004981 ORTHO05D005635 8.9e-144 514.2 420 72.9
Rhsim05G0107500 Rhododendron simsii HOM05D004981 ORTHO05D005635 2.0e-140 503.1 445 65.2
Rhsim05G0107600 Rhododendron simsii HOM05D004981 ORTHO05D005635 1.7e-139 500.0 447 64.4
vmacro19928 Vaccinium macrocarpon HOM05D004981 ORTHO05D005635 1.7e-123 446.8 510 57.3
GSVIVG01029180001 Vitis vinifera HOM05D004981 ORTHO05D005635 9.6e-114 414.5 413 61.7
Duzib132G0770 Durio zibethinus HOM05D004981 ORTHO05D005635 3.6e-113 412.5 420 61.2
Thecc.02G139100 Theobroma cacao HOM05D004981 ORTHO05D005635 4.0e-112 409.1 424 60.8
Hma1.2p1_0704F.1_g206680 Hydrangea macrophylla HOM05D004981 ORTHO05D005635 1.1e-109 401.0 345 70.4
Gorai.005G219800 Gossypium raimondii HOM05D004981 ORTHO05D005635 3.2e-109 399.4 423 60.3
Gohir.A03G173700 Gossypium hirsutum HOM05D004981 ORTHO05D005635 2.1e-108 396.7 423 58.6
Gohir.D02G196800 Gossypium hirsutum HOM05D004981 ORTHO05D005635 2.1e-108 396.7 423 59.8
Nn5g30124 Nelumbo nucifera HOM05D004981 ORTHO05D005635 4.6e-108 395.6 413 59.3
MELO3C018646.2 Cucumis melo HOM05D004981 ORTHO05D005635 6.0e-108 395.2 408 59.6
Prupe.8G061500 Prunus persica HOM05D004981 ORTHO05D005635 1.0e-107 394.4 382 58.6
Manes.06G012400 Manihot esculenta HOM05D004981 ORTHO05D005635 5.1e-107 392.1 420 59.3
Gohir.D13G054600 Gossypium hirsutum HOM05D004981 ORTHO05D005635 1.9e-106 390.2 422 60.0
CsaV3_7G006460 Cucumis sativus L. HOM05D004981 ORTHO05D005635 3.3e-106 389.4 408 59.1
Cc02_g21590 Coffea canephora HOM05D004981 ORTHO05D005635 1.3e-105 387.5 411 60.6
Gorai.013G061400 Gossypium raimondii HOM05D004981 ORTHO05D005635 2.1e-105 386.7 422 59.7
QL11p020696 Quercus lobata HOM05D004981 ORTHO05D005635 6.2e-105 385.2 388 58.2
Sed0011642 Sechium edule HOM05D004981 ORTHO05D005635 1.4e-104 384.0 404 59.2
Sopen04g004240 Solanum pennellii HOM05D004981 ORTHO05D005635 1.8e-104 383.6 408 60.0
MD05G1045100 Malus domestica HOM05D004981 ORTHO05D005635 1.2e-103 380.9 417 58.3
CiPaw.06G153000 Carya illinoinensis HOM05D004981 ORTHO05D005635 2.0e-103 380.2 424 57.5
CANSAT11G0061 Cannabis sativa HOM05D004981 ORTHO05D005635 2.6e-103 379.8 404 59.9
Gohir.A13G067000 Gossypium hirsutum HOM05D004981 ORTHO05D005635 2.6e-103 379.8 422 59.2
Solyc04g009060.4 Solanum lycopersicum HOM05D004981 ORTHO05D005635 4.5e-103 379.0 408 59.6
TWI59G1067 Tripterygium wilfordii HOM05D004981 ORTHO05D005635 7.6e-103 378.3 405 57.8
TAR114G0002 Trochodendron aralioides HOM05D004981 ORTHO05D005635 7.6e-103 378.3 341 62.8
PGR142G3166 Punica granatum HOM05D004981 ORTHO05D005635 2.9e-102 376.3 408 60.0
PGSC0003DMG400011507 Solanum tuberosum HOM05D004981 ORTHO05D005635 2.9e-102 376.3 408 59.1
ClCG09G015370 Citrullus lanatus HOM05D004981 ORTHO05D005635 1.1e-101 374.4 412 58.5
Cfa005605 Carpinus fangiana HOM05D004981 ORTHO05D005635 2.4e-101 373.2 407 58.0
Lj5A239G83 Lonicera japonica HOM05D004981 ORTHO05D005635 1.6e-100 370.5 335 64.2
Lj6g0025255 Lotus japonicus HOM05D004981 ORTHO05D005635 2.1e-100 370.2 419 57.0
arahy.Tifrunner.gnm1.ann1.NXB9BB Arachis hypogaea HOM05D004981 ORTHO05D005635 1.8e-99 367.1 417 58.8
VMungo0540G0644 Vigna mungo HOM05D004981 ORTHO05D005635 1.8e-99 367.1 401 59.9
CAN.G274.6 Capsicum annuum HOM05D004981 ORTHO05D005635 2.3e-99 366.7 408 58.6
Potri.001G205700 Populus trichocarpa HOM05D004981 ORTHO05D005635 6.7e-99 365.2 420 56.4
Ca_00133_v3 Cicer arietinum L. HOM05D004981 ORTHO05D005635 8.7e-99 364.8 406 58.1
Atru.chr5.2124 Acer truncatum HOM05D004981 ORTHO05D005635 1.1e-98 364.4 434 57.1
Duzib248G0633 Durio zibethinus HOM05D004981 ORTHO05D005635 2.5e-98 363.2 378 57.4
Oeu047361.1 Olea europaea HOM05D004981 ORTHO05D005635 5.6e-98 362.1 378 57.1
COL.COLO4_24958 Corchorus olitorius HOM05D004981 ORTHO05D005635 9.6e-98 361.3 433 56.1
arahy.Tifrunner.gnm1.ann1.NS4PA6 Arachis hypogaea HOM05D004981 ORTHO05D005635 6.2e-97 358.6 417 57.6
MBI02_g08724_MAGBIO Magnolia biondii HOM05D004981 ORTHO05D005635 4.0e-96 355.9 407 58.2
Sc20g0002060 Simmondsia chinensis HOM05D004981 ORTHO05D005635 4.0e-96 355.9 362 58.6
Glyma.15G053300 Glycine max HOM05D004981 ORTHO05D005635 6.9e-96 355.1 446 54.3
Phvul.006G206700 Phaseolus vulgaris HOM05D004981 ORTHO05D005635 1.3e-94 350.9 398 59.3
CDE10G0645 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 2.2e-94 350.1 412 54.4
Potri.003G023700 Populus trichocarpa HOM05D004981 ORTHO05D005635 8.4e-94 348.2 408 57.6
Lalb_Chr20g0123041 Lupinus albus HOM05D004981 ORTHO05D005635 3.2e-93 346.3 418 56.0
Nitab4.5_0008051g0010 Nicotiana tabacum HOM05D004981 ORTHO05D005635 3.2e-93 346.3 336 60.7
Glyma.08G179200 Glycine max HOM05D004981 ORTHO05D005635 1.6e-92 344.0 446 54.3
HanXRQChr16g0514321 Helianthus annuus HOM05D004981 ORTHO05D005635 7.9e-92 341.7 412 55.3
Medtr2g008810 Medicago truncatula HOM05D004981 ORTHO05D005635 1.0e-91 341.3 398 56.3
Cpa.g.sc49.24 Carica papaya HOM05D004981 ORTHO05D005635 2.3e-91 340.1 349 56.4
Dinv09034 Davidia involucrata HOM05D004981 ORTHO05D005635 1.3e-89 334.3 250 73.6
Peaxi162Scf00152g01024 Petunia axillaris HOM05D004981 ORTHO05D005635 4.8e-89 332.4 342 57.0
Lsat_1_v5_gn_5_107300 Lactuca sativa HOM05D004981 ORTHO05D005635 1.5e-87 327.4 401 55.4
Migut.B00612 Erythranthe guttata HOM05D004981 ORTHO05D005635 3.4e-87 326.2 395 54.9
Sabra01G0158000 Salix brachista HOM05D004981 ORTHO05D005635 8.4e-86 321.6 435 50.3
Oeu011769.5 Olea europaea HOM05D004981 ORTHO05D005635 1.9e-85 320.5 405 49.9
SGA_v2.0_scaffold83G26298 Striga asiatica HOM05D004981 ORTHO05D005635 2.5e-85 320.1 425 50.1
Psat1g216680 Pisum sativum HOM05D004981 ORTHO05D005635 7.1e-85 318.5 355 55.8
Ciclev10025761m.g Citrus clementina HOM05D004981 ORTHO05D005635 9.3e-85 318.2 442 50.5
ECA234G4021 Erigeron canadensis HOM05D004981 ORTHO05D005635 4.6e-84 315.8 399 53.4
TPR.G9514 Trifolium pratense HOM05D004981 ORTHO05D005635 3.9e-83 312.8 355 57.2
DCAR_021855 Daucus carota HOM05D004981 ORTHO05D005635 6.7e-83 312.0 402 54.2
MSTRG.20297 Avicennia marina HOM05D004981 ORTHO05D005635 4.3e-82 309.3 261 64.0
SalBow5G0436 Salvia bowleyana HOM05D004981 ORTHO05D005635 4.1e-80 302.8 384 53.9
ATR0753G166 Amborella trichopoda HOM05D004981 ORTHO05D005635 5.3e-80 302.4 438 48.9
THA.LOC104818438 Tarenaya hassleriana HOM05D004981 ORTHO05D005635 1.0e-78 298.1 408 51.0
AUR62010122 Chenopodium quinoa HOM05D004981 ORTHO05D005635 8.5e-78 295.0 407 52.1
Eucgr.I02666 Eucalyptus grandis HOM05D004981 ORTHO05D005635 2.5e-77 293.5 254 65.7
EL10Ac9g21471 Beta vulgaris HOM05D004981 ORTHO05D005635 4.6e-76 289.3 403 50.1
PSO781G0052 Papaver somniferum HOM05D004981 ORTHO05D005635 1.6e-73 280.8 401 49.4
Nitab4.5_0000480g0020 Nicotiana tabacum HOM05D004981 ORTHO05D005635 4.1e-72 276.2 310 52.3
FAN04G0403 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.2e-71 274.6 403 50.6
Zm00001eb311320 Zea mays HOM05D004981 ORTHO05D005635 4.5e-71 272.7 420 46.4
FAN18G1425 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.0e-70 271.6 406 50.2
Prupe.5G160300 Prunus persica HOM05D004981 ORTHO05D005635 1.0e-70 271.6 409 48.7
Aa31LG3G17630 Aethionema arabicum HOM05D004981 ORTHO05D005635 5.0e-70 269.2 404 49.0
PSO541G0435 Papaver somniferum HOM05D004981 ORTHO05D005635 1.1e-69 268.1 401 48.9
RcHm_v2.0_Chr7g0191681 Rosa chinensis HOM05D004981 ORTHO05D005635 1.4e-69 267.7 405 50.1
FvH4_5g07000 Fragaria vesca HOM05D004981 ORTHO05D005635 2.3e-67 260.4 403 49.9
BraA10t44837Z Brassica rapa HOM05D004981 ORTHO05D005635 5.1e-67 259.2 407 47.2
AUR62013118 Chenopodium quinoa HOM05D004981 ORTHO05D005635 5.1e-67 259.2 439 43.5
MD14G1166200 Malus domestica HOM05D004981 ORTHO05D005635 8.8e-67 258.5 409 50.1
A10p27880 Brassica napus HOM05D004981 ORTHO05D005635 4.4e-66 256.1 407 46.9
SEGI_39436 Sequoiadendron giganteum HOM05D004981 ORTHO05D005635 2.2e-65 253.8 375 45.6
Sp6g33940 Schrenkiella parvula HOM05D004981 ORTHO05D005635 1.4e-64 251.1 408 47.3
Aqoxy6G00803 Aquilegia oxysepala HOM05D004981 ORTHO05D005635 2.4e-64 250.4 406 48.0
FAN08G0200 Fragaria x ananassa HOM05D004981 ORTHO05D005635 4.1e-64 249.6 408 47.8
Os09g0372400 Oryza sativa ssp. japonica HOM05D004981 ORTHO05D005635 2.6e-63 246.9 321 50.2
Sabra03G0014800 Salix brachista HOM05D004981 ORTHO05D005635 3.4e-63 246.5 230 63.0
C09p67980 Brassica napus HOM05D004981 ORTHO05D005635 1.7e-62 244.2 271 53.1
BolC9t59557H Brassica oleracea HOM05D004981 ORTHO05D005635 1.7e-62 244.2 271 53.1
TPR.G21754 Trifolium pratense HOM05D004981 ORTHO05D005635 1.1e-61 241.5 229 59.0
Hund00058 Selenicereus undatus HOM05D004981 ORTHO05D005635 1.4e-61 241.1 384 46.1
BcaB08g37209 Brassica carinata HOM05D004981 ORTHO05D005635 3.9e-59 233.0 387 45.7
Pp3c22_4170 Physcomitrium patens HOM05D004981 ORTHO05D005635 8.8e-59 231.9 381 44.1
Mapoly0041s0053 Marchantia polymorpha HOM05D004981 ORTHO05D005635 3.7e-57 226.5 399 44.9
AL6G19780 Arabidopsis lyrata HOM05D004981 ORTHO05D005635 8.2e-57 225.3 409 45.2
Carub.0006s0794 Capsella rubella HOM05D004981 ORTHO05D005635 9.1e-56 221.9 411 43.8
AT5G09390 Arabidopsis thaliana HOM05D004981 ORTHO05D005635 4.5e-55 219.5 411 45.7
Thhalv10013574m.g Eutrema salsugineum HOM05D004981 ORTHO05D005635 1.7e-54 217.6 407 44.2
HPP92_013108 Vanilla planifolia HOM05D004981 ORTHO05D005635 8.5e-54 215.3 233 53.2
Medtr5g017190 Medicago truncatula HOM05D004981 ORTHO05D005635 1.5e-53 214.5 237 54.9
COL.COLO4_15286 Corchorus olitorius HOM05D004981 ORTHO05D005635 8.0e-52 208.8 261 52.9
CARHR204020 Cardamine hirsuta HOM05D004981 ORTHO05D005635 4.4e-50 203.0 382 42.9
HPP92_013085 Vanilla planifolia HOM05D004981 ORTHO05D005635 1.1e-45 188.3 320 42.5
Lj1g0016172 Lotus japonicus HOM05D004981 ORTHO05D005635 4.2e-45 186.4 358 38.3
FAN08G2142 Fragaria x ananassa HOM05D004981 ORTHO05D005635 9.4e-45 185.3 380 43.9
AagrBONN_evm.TU.Sc2ySwM_117.1804 Anthoceros agrestis HOM05D004981 ORTHO05D005635 3.0e-43 180.3 232 47.4
SMO356G0631 Selaginella moellendorffii HOM05D004981 ORTHO05D005635 3.4e-42 176.8 225 46.7
CBR_g31506 Chara braunii HOM05D004981 ORTHO05D005635 1.1e-40 171.8 444 36.0
Ah.01g009580 Amaranthus hybridus HOM05D004981 ORTHO05D005635 1.2e-36 158.3 260 41.2
FAN21G1455 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.2e-28 131.7 249 46.6
VMungo1383G1991 Vigna mungo HOM05D004981 ORTHO05D005635 3.0e-27 127.1 143 53.8
Ah.01g009610 Amaranthus hybridus HOM05D004981 ORTHO05D005635 3.7e-25 120.2 197 50.3
RcHm_v2.0_Chr7g0224681 Rosa chinensis HOM05D004981 ORTHO05D005635 1.0e-22 112.1 210 41.4
FvH4_4g13240 Fragaria vesca HOM05D004981 ORTHO05D005635 4.7e-20 103.2 156 45.5
Thecc.06G050700 Theobroma cacao HOM05D004981 ORTHO05D005635 2.3e-19 100.9 85 63.5
FAN12G0625 Fragaria x ananassa HOM05D004981 ORTHO05D005635 3.7e-17 93.6 106 53.8
Lsat_1_v5_gn_5_82561 Lactuca sativa HOM05D004981 ORTHO05D005635 6.4e-17 92.8 85 65.9
VMungo1383G0650 Vigna mungo HOM05D004981 ORTHO05D005635 3.0e-14 84.0 154 39.6
PRCOL_00000241 Prasinoderma coloniale HOM05D004981 ORTHO05D005635 3.9e-14 83.6 272 26.8
Lsat_1_v5_gn_5_14961 Lactuca sativa HOM05D004981 ORTHO05D005635 3.3e-13 80.5 179 42.5
Lsat_1_v5_gn_4_93920 Lactuca sativa HOM05D004981 ORTHO05D005635 7.5e-10 69.3 119 41.2
CDE10G1193 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 1.3e-09 68.6 82 50.0
C05p07220 Brassica napus HOM05D001624 ORTHO05D005635 2.9e-09 67.4 214 29.4
Cre06.g299450 Chlamydomonas reinhardtii HOM05D004981 ORTHO05D005635 4.9e-09 66.6 108 38.0
Cre04.g221350 Chlamydomonas reinhardtii HOM05D004981 ORTHO05D005635 1.7e-06 58.2 126 38.1
Dinv07233 Davidia involucrata HOM05D004981 ORTHO05D005635 1.7e-06 58.2 65 47.7
FAN17G2803 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.7e-06 58.2 150 33.3


User provided reference genes

Program Settings