Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.2e-288 995.0 516 100.0
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.7e-272 942.2 519 95.4
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 5.5e-223 777.7 423 93.9
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 8.6e-208 727.2 499 76.4
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 4.7e-206 721.5 501 77.4
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 1.0e-205 720.3 502 75.3
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 5.2e-205 718.0 495 74.9
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 2.8e-198 695.7 512 71.3
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 9.2e-194 680.6 498 71.3
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 2.7e-193 679.1 493 70.8
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 4.6e-193 678.3 469 74.6
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 4.6e-193 678.3 498 71.3
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 3.0e-192 675.6 483 72.7
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 3.9e-192 675.2 529 69.2
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 3.9e-192 675.2 501 70.7
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 1.9e-191 672.9 523 67.9
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 5.6e-191 671.4 508 70.1
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 1.4e-189 666.8 512 69.1
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 2.3e-189 666.0 460 74.8
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 4.0e-189 665.2 508 68.7
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 2.2e-187 659.4 498 69.7
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 2.9e-187 659.1 469 73.6
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 1.9e-186 656.4 529 65.2
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 2.4e-186 656.0 499 68.3
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 3.2e-186 655.6 501 70.3
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 3.2e-186 655.6 498 68.7
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 6.0e-185 651.4 496 66.7
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 1.7e-184 649.8 496 66.9
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 2.3e-184 649.4 496 67.3
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 3.0e-184 649.0 488 69.3
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 3.9e-184 648.7 468 70.1
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 3.9e-184 648.7 468 70.1
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 3.9e-184 648.7 497 70.0
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 6.6e-184 647.9 456 73.9
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 1.1e-183 647.1 472 71.0
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 1.5e-183 646.7 502 68.3
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 1.9e-183 646.4 470 71.7
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 4.3e-183 645.2 490 69.2
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 7.3e-183 644.4 471 70.7
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 9.5e-183 644.0 504 68.1
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 9.5e-183 644.0 478 70.3
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.6e-182 643.3 477 69.0
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 1.6e-182 643.3 475 69.9
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 2.1e-182 642.9 497 68.4
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 1.1e-181 640.6 498 68.5
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 2.3e-181 639.4 445 72.1
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 3.1e-181 639.0 507 67.9
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 6.8e-181 637.9 468 69.2
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.2e-180 637.1 468 68.8
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 1.5e-180 636.7 440 72.3
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 3.4e-180 635.6 470 70.2
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 5.8e-180 634.8 443 73.1
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 2.2e-179 632.9 445 71.2
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 2.9e-179 632.5 507 64.9
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 8.3e-179 630.9 468 69.2
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 2.4e-178 629.4 507 65.7
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 4.1e-178 628.6 504 66.3
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 2.1e-177 626.3 489 67.9
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 2.7e-177 625.9 490 67.8
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 6.0e-177 624.8 508 66.1
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 1.3e-176 623.6 472 67.8
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 3.9e-176 622.1 480 67.3
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 6.6e-176 621.3 480 67.1
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.5e-175 620.2 501 65.7
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 3.3e-175 619.0 470 67.0
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 3.3e-175 619.0 463 68.5
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 4.3e-175 618.6 471 67.1
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 1.2e-174 617.1 499 64.3
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 3.1e-173 612.5 508 61.8
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 3.1e-173 612.5 470 66.4
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 3.1e-173 612.5 463 66.3
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 1.5e-172 610.1 494 64.8
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 3.4e-172 609.0 463 66.5
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 3.4e-172 609.0 465 68.4
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 5.8e-172 608.2 501 65.3
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 5.8e-172 608.2 480 64.2
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 7.6e-172 607.8 495 62.8
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 9.9e-172 607.4 467 66.2
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 9.9e-172 607.4 502 62.4
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 9.9e-172 607.4 502 62.4
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 1.7e-171 606.7 501 62.9
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 1.7e-171 606.7 501 62.9
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 4.9e-171 605.1 488 64.3
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 2.7e-169 599.4 474 65.0
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 7.3e-167 591.3 491 62.9
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 5.4e-162 575.1 533 58.2
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 9.6e-159 564.3 503 60.8
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 2.1e-158 563.1 575 55.7
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 4.8e-158 562.0 545 57.6
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 4.0e-157 558.9 464 65.1
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 6.9e-157 558.1 425 65.9
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 1.2e-156 557.4 460 65.0
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 1.5e-156 557.0 425 65.6
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 2.7e-153 546.2 498 60.0
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 2.7e-153 546.2 468 60.7
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.5e-151 540.4 394 70.6
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.9e-147 526.2 502 59.6
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 2.3e-144 516.5 387 67.7
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 3.1e-141 506.1 444 60.1
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 9.0e-141 504.6 471 59.4
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 1.0e-139 501.1 404 62.1
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 8.2e-126 454.9 470 53.4
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 6.9e-125 451.8 363 66.7
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 2.5e-122 443.4 447 52.8
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 5.7e-119 432.2 265 87.9
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.3e-112 410.2 235 88.5
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 9.4e-106 388.3 231 82.7
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 6.7e-104 382.1 259 74.1
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 1.7e-91 340.9 290 65.2
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 5.0e-91 339.3 269 68.4
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 1.1e-90 338.2 201 81.1
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 3.3e-90 336.7 202 80.2
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 7.2e-90 335.5 238 67.6
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 7.2e-90 335.5 238 67.6
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 7.5e-87 325.5 327 53.5
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 3.6e-81 306.6 322 50.6
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 3.1e-80 303.5 229 68.6
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 1.6e-76 291.2 240 64.2
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 4.3e-74 283.1 332 46.1
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 7.3e-74 282.3 186 74.2
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 1.7e-70 271.2 187 71.1
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.4e-69 268.1 249 64.3
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 9.2e-69 265.4 211 66.8
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 7.8e-68 262.3 228 60.1
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 1.5e-66 258.1 178 73.0
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 6.8e-56 222.6 157 70.7
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 5.8e-55 219.5 169 65.1
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 1.1e-48 198.7 163 62.6
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.7e-44 184.1 177 57.1
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 8.7e-43 179.1 418 30.4
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 3.0e-35 154.1 119 66.4
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 3.1e-32 144.1 482 31.1
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 1.5e-31 141.7 139 54.7
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 6.0e-28 129.8 146 47.9
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.1e-25 121.3 99 58.6
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 3.0e-19 100.9 55 87.3
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.5e-18 98.6 61 77.0
Cre10.g425200 Chlamydomonas reinhardtii HOM05D005286 ORTHO05D006348 2.9e-14 84.3 152 39.5
Peaxi162Scf00151g00815 Petunia axillaris HOM05D005286 ORTHO05D006348 3.6e-12 77.4 79 50.6
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 1.0e-11 75.9 295 29.5
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.4e-11 75.5 101 45.5
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 5.1e-11 73.6 57 56.1
Nitab4.5_0005379g0060 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.0e-10 71.6 134 38.1
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 9.7e-10 69.3 69 62.3
Peaxi162Scf00151g00817 Petunia axillaris HOM05D005286 ORTHO05D006348 5.0e-06 57.0 43 67.4


User provided reference genes

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