Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 3.8e-76 288.1 146 100.0
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 3.0e-57 225.3 155 74.8
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 3.9e-57 224.9 146 76.7
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 5.1e-57 224.6 146 77.4
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 5.1e-57 224.6 145 77.2
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 6.7e-57 224.2 159 71.7
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 2.5e-56 222.2 146 74.7
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 3.3e-56 221.9 155 72.9
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 3.3e-56 221.9 145 77.2
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 4.3e-56 221.5 169 68.0
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 4.3e-56 221.5 159 71.1
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 5.6e-56 221.1 169 67.5
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 7.4e-56 220.7 145 75.9
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 7.4e-56 220.7 182 64.8
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 1.3e-55 219.9 157 70.1
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 1.3e-55 219.9 180 65.6
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 1.6e-55 219.5 161 69.6
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 1.6e-55 219.5 156 70.5
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 2.1e-55 219.2 156 69.9
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 2.8e-55 218.8 172 66.3
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 2.8e-55 218.8 171 67.8
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 3.7e-55 218.4 155 71.0
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 3.7e-55 218.4 150 74.0
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 8.1e-55 217.2 180 64.4
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 8.1e-55 217.2 158 72.2
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 1.1e-54 216.9 155 71.0
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 1.1e-54 216.9 166 68.1
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 1.4e-54 216.5 155 69.0
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 1.4e-54 216.5 174 65.5
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 2.4e-54 215.7 156 69.2
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 3.1e-54 215.3 193 59.6
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 4.0e-54 214.9 165 66.7
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 4.0e-54 214.9 157 70.7
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 5.3e-54 214.5 177 65.0
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 6.9e-54 214.2 163 66.9
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 9.0e-54 213.8 148 72.3
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 9.0e-54 213.8 155 69.0
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 1.2e-53 213.4 157 68.8
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 1.5e-53 213.0 155 71.0
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 2.0e-53 212.6 153 69.9
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 2.6e-53 212.2 153 69.3
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 4.5e-53 211.5 148 68.9
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 4.5e-53 211.5 155 69.7
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 7.6e-53 210.7 150 70.0
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 7.6e-53 210.7 155 67.7
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 9.9e-53 210.3 153 68.6
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 9.9e-53 210.3 155 69.0
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 1.3e-52 209.9 154 68.2
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 1.7e-52 209.5 166 65.1
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 2.9e-52 208.8 153 68.0
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 2.9e-52 208.8 153 68.0
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 2.9e-52 208.8 153 68.0
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 4.9e-52 208.0 150 69.3
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 8.4e-52 207.2 172 64.0
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 8.4e-52 207.2 159 66.0
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 8.4e-52 207.2 150 68.0
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 1.1e-51 206.8 172 61.6
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 1.4e-51 206.5 170 62.4
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 1.9e-51 206.1 175 64.6
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 2.4e-51 205.7 143 73.4
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 1.8e-49 199.5 146 67.8
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 2.3e-49 199.1 145 69.7
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 3.0e-49 198.7 153 66.0
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 8.7e-49 197.2 204 53.4
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 1.5e-48 196.4 143 69.9
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 1.5e-48 196.4 140 68.6
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 1.3e-47 193.4 196 53.6
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 1.3e-47 193.4 185 57.3
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 2.1e-47 192.6 213 50.7
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 2.1e-47 192.6 143 69.2
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 3.7e-47 191.8 150 62.0
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 3.7e-47 191.8 112 86.6
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 1.8e-46 189.5 150 64.7
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 2.4e-46 189.1 141 67.4
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 3.1e-46 188.7 173 57.2
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 4.0e-46 188.3 156 63.5
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 4.0e-46 188.3 146 65.1
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 6.9e-46 187.6 109 83.5
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 6.9e-46 187.6 145 69.0
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 1.2e-45 186.8 143 67.8
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 4.5e-45 184.9 173 58.4
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 1.0e-44 183.7 162 58.0
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 1.3e-44 183.3 109 80.7
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 1.7e-44 183.0 144 65.3
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 2.2e-44 182.6 116 79.3
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 2.9e-44 182.2 160 58.8
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 2.9e-44 182.2 113 79.6
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 3.8e-44 181.8 156 59.6
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 1.1e-43 180.3 115 80.0
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 1.1e-43 180.3 156 62.8
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 1.1e-43 180.3 119 75.6
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 2.5e-43 179.1 110 80.9
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 4.2e-43 178.3 157 58.6
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 5.5e-43 177.9 141 65.2
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 7.1e-43 177.6 150 58.7
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 1.2e-42 176.8 109 78.0
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 2.1e-42 176.0 112 75.0
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 2.1e-42 176.0 173 54.3
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 3.5e-42 175.3 112 75.0
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 4.6e-42 174.9 109 77.1
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 1.8e-41 172.9 158 56.3
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 3.0e-41 172.2 109 77.1
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 5.1e-41 171.4 124 71.0
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 6.7e-41 171.0 144 58.3
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 1.1e-40 170.2 109 77.1
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 1.5e-40 169.9 116 73.3
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 3.3e-40 168.7 135 60.7
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 2.2e-39 166.0 128 64.8
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 6.3e-39 164.5 174 50.6
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 1.4e-38 163.3 112 71.4
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.8e-38 162.9 142 69.0
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 1.2e-37 160.2 150 56.0
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 1.2e-37 160.2 168 53.6
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 2.0e-37 159.5 124 66.1
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 3.4e-37 158.7 110 70.0
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 5.9e-37 157.9 109 69.7
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 7.7e-37 157.5 156 53.8
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 1.0e-36 157.1 152 59.2
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 2.5e-35 152.5 146 61.6
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 4.2e-35 151.8 153 51.0
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 7.9e-34 147.5 152 50.0
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 7.9e-34 147.5 158 57.0
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 1.0e-33 147.1 168 49.4
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 1.9e-32 142.9 142 57.0
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 1.9e-32 142.9 98 69.4
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 1.7e-31 139.8 150 50.7
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 2.2e-31 139.4 72 100.0
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 2.8e-31 139.0 112 60.7
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 3.7e-31 138.7 155 49.0
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 4.8e-31 138.3 144 56.2
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 2.0e-29 132.9 80 76.2
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 4.2e-27 125.2 123 50.4
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 3.0e-25 119.0 110 60.9
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 4.4e-24 115.2 150 45.3
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 7.4e-24 114.4 80 72.5
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 3.4e-21 105.5 67 76.1
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 5.9e-21 104.8 108 53.7
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 5.9e-21 104.8 70 72.9
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 2.9e-20 102.4 73 68.5
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.1e-19 100.5 81 61.7
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 1.2e-18 97.1 132 47.0
Os12g0120400 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.2e-18 97.1 72 56.9
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 3.0e-17 92.4 117 50.4
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 3.0e-17 92.4 120 50.0
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 1.7e-15 86.7 55 74.5
EL10Ac9g22872 Beta vulgaris HOM05D007938 ORTHO05D009929 1.5e-11 73.6 63 58.7
RcHm_v2.0_Chr1g0353171 Rosa chinensis HOM05D004274 ORTHO05D004980 1.2e-10 70.5 78 51.3
Haze_26272 Corylus avellana HOM05D001787 ORTHO05D007379 2.1e-10 69.7 149 32.9
Os09g0246250 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.8e-09 66.6 47 57.4
Solyc09g018630.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 4.0e-09 65.5 51 62.7
arahy.Tifrunner.gnm1.ann1.8HSJ02 Arachis hypogaea HOM05D002696 ORTHO05D011600 2.0e-08 63.2 42 66.7
Dinv28765 Davidia involucrata HOM05D004274 ORTHO05D004980 5.7e-08 61.6 35 82.9
Hund24328 Selenicereus undatus HOM05D004274 ORTHO05D004980 1.7e-07 60.1 35 74.3
MSTRG.12721 Avicennia marina HOM05D004274 ORTHO05D004980 6.3e-07 58.2 35 71.4
Actinidia34514 Actinidia chinensis HOM05D004274 ORTHO05D004980 1.4e-06 57.0 35 74.3
ClCG10G000760 Citrullus lanatus HOM05D004274 ORTHO05D004980 7.0e-06 54.7 35 71.4
MSTRG.21280 Avicennia marina HOM05D004274 ORTHO05D004980 9.1e-06 54.3 35 65.7
CDE08G1045 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 9.1e-06 54.3 35 68.6


User provided reference genes

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