Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034709 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D007109 2.7e-35 151.4 73 100.0
CSS0016162 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D007109 4.7e-27 124.0 78 82.1
CSS0040450 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D007109 4.7e-27 124.0 78 82.1
CSS0023444 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D007109 5.7e-25 117.1 80 78.8
CSS0035740 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D007109 5.7e-25 117.1 80 78.8
BcaC07g36894 Brassica carinata HOM05D002401 ORTHO05D007109 4.1e-23 110.9 77 72.7
C08p01320 Brassica napus HOM05D002401 ORTHO05D007109 7.0e-23 110.2 77 71.4
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 1.2e-22 109.4 77 72.7
Actinidia39375 Actinidia chinensis HOM05D002401 ORTHO05D007109 1.2e-22 109.4 77 72.7
SalBow2G2702 Salvia bowleyana HOM05D002401 ORTHO05D007109 2.0e-22 108.6 78 70.5
BolC8t46934H Brassica oleracea HOM05D002401 ORTHO05D007109 2.7e-22 108.2 81 67.9
AL1G14330 Arabidopsis lyrata HOM05D002401 ORTHO05D007109 3.5e-22 107.8 77 71.4
BcaC07g36899 Brassica carinata HOM05D002401 ORTHO05D007109 3.5e-22 107.8 77 71.4
C08p01270 Brassica napus HOM05D002401 ORTHO05D007109 3.5e-22 107.8 77 71.4
Sed0000230 Sechium edule HOM05D002401 ORTHO05D007109 4.5e-22 107.5 78 67.9
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 5.9e-22 107.1 77 71.4
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 5.9e-22 107.1 77 71.4
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 5.9e-22 107.1 77 71.4
QL01p009075 Quercus lobata HOM05D002401 ORTHO05D007109 5.9e-22 107.1 77 71.4
vmacro21025 Vaccinium macrocarpon HOM05D002401 ORTHO05D007109 7.7e-22 106.7 76 72.4
VMungo0720G0059 Vigna mungo HOM05D002401 ORTHO05D007109 7.7e-22 106.7 77 68.8
BolC8t46940H Brassica oleracea HOM05D002401 ORTHO05D007109 1.0e-21 106.3 77 68.8
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 1.0e-21 106.3 77 70.1
Lalb_Chr21g0308061 Lupinus albus HOM05D002401 ORTHO05D007109 1.0e-21 106.3 77 68.8
Manes.14G015200 Manihot esculenta HOM05D002401 ORTHO05D007109 1.0e-21 106.3 76 71.1
Sp4g14620 Schrenkiella parvula HOM05D002401 ORTHO05D007109 1.0e-21 106.3 77 68.8
MSTRG.225 Avicennia marina HOM05D002401 ORTHO05D007109 1.3e-21 105.9 78 67.9
Thhalv10009297m.g Eutrema salsugineum HOM05D002401 ORTHO05D007109 1.3e-21 105.9 77 68.8
CiPaw.13G168200 Carya illinoinensis HOM05D002401 ORTHO05D007109 1.7e-21 105.5 77 70.1
Sp1g03480 Schrenkiella parvula HOM05D002401 ORTHO05D007109 1.7e-21 105.5 77 68.8
THA.LOC104801054 Tarenaya hassleriana HOM05D002401 ORTHO05D007109 1.7e-21 105.5 76 71.1
ClCG03G013630 Citrullus lanatus HOM05D002401 ORTHO05D007109 2.3e-21 105.1 78 66.7
Aa31LG1G20230 Aethionema arabicum HOM05D002401 ORTHO05D007109 2.9e-21 104.8 76 67.1
AT1G04640 Arabidopsis thaliana HOM05D002401 ORTHO05D007109 2.9e-21 104.8 77 68.8
CARHR004000 Cardamine hirsuta HOM05D002401 ORTHO05D007109 2.9e-21 104.8 77 68.8
Ca_02939_v3 Cicer arietinum L. HOM05D002401 ORTHO05D007109 2.9e-21 104.8 77 67.5
Cc01_g03820 Coffea canephora HOM05D002401 ORTHO05D007109 2.9e-21 104.8 77 67.5
MELO3C015679.2 Cucumis melo HOM05D002401 ORTHO05D007109 2.9e-21 104.8 76 68.4
Carub.0001s0388 Capsella rubella HOM05D002401 ORTHO05D007109 5.0e-21 104.0 77 67.5
Ciclev10016532m.g Citrus clementina HOM05D002401 ORTHO05D007109 5.0e-21 104.0 76 71.1
Gohir.D13G218700 Gossypium hirsutum HOM05D002401 ORTHO05D007109 5.0e-21 104.0 76 71.1
Gorai.013G249500 Gossypium raimondii HOM05D002401 ORTHO05D007109 5.0e-21 104.0 76 71.1
CsaV3_1G042440 Cucumis sativus L. HOM05D002401 ORTHO05D007109 6.6e-21 103.6 76 67.1
Thecc.09G219400 Theobroma cacao HOM05D002401 ORTHO05D007109 6.6e-21 103.6 76 69.7
CSS0046228 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D007109 8.6e-21 103.2 67 79.1
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 8.6e-21 103.2 76 71.1
TAR636G2973 Trochodendron aralioides HOM05D002401 ORTHO05D007109 8.6e-21 103.2 77 68.8
FvH4_3g43830 Fragaria vesca HOM05D002401 ORTHO05D007109 1.1e-20 102.8 77 67.5
FAN11G0540 Fragaria x ananassa HOM05D002401 ORTHO05D007109 1.1e-20 102.8 77 67.5
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 1.1e-20 102.8 77 67.5
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 1.1e-20 102.8 77 67.5
TAR636G3466 Trochodendron aralioides HOM05D002401 ORTHO05D007109 1.1e-20 102.8 84 63.1
Duzib168G1104 Durio zibethinus HOM05D002401 ORTHO05D007109 1.5e-20 102.4 76 69.7
Eucgr.B02601 Eucalyptus grandis HOM05D002401 ORTHO05D007109 1.9e-20 102.1 77 66.2
Glyma.20G134600 Glycine max HOM05D002401 ORTHO05D007109 1.9e-20 102.1 77 66.2
Lj5g0001405 Lotus japonicus HOM05D002401 ORTHO05D007109 1.9e-20 102.1 77 67.5
Phvul.007G046000 Phaseolus vulgaris HOM05D002401 ORTHO05D007109 1.9e-20 102.1 77 66.2
arahy.Tifrunner.gnm1.ann1.IPP45T Arachis hypogaea HOM05D002401 ORTHO05D007109 2.5e-20 101.7 77 67.5
arahy.Tifrunner.gnm1.ann1.Y60BUA Arachis hypogaea HOM05D002401 ORTHO05D007109 2.5e-20 101.7 77 67.5
Gohir.A13G215000 Gossypium hirsutum HOM05D002401 ORTHO05D007109 2.5e-20 101.7 76 69.7
Prupe.6G017700 Prunus persica HOM05D002401 ORTHO05D007109 2.5e-20 101.7 77 68.8
Migut.N02287 Erythranthe guttata HOM05D002401 ORTHO05D007109 3.3e-20 101.3 82 64.6
Nn6g34874 Nelumbo nucifera HOM05D002401 ORTHO05D007109 3.3e-20 101.3 76 68.4
Ah.04g161710 Amaranthus hybridus HOM05D002401 ORTHO05D007109 4.2e-20 100.9 76 65.8
CAN.G1058.20 Capsicum annuum HOM05D002401 ORTHO05D007109 4.2e-20 100.9 77 64.9
ECA233G1816 Erigeron canadensis HOM05D002401 ORTHO05D007109 4.2e-20 100.9 77 67.5
FAN25G3049 Fragaria x ananassa HOM05D002401 ORTHO05D007109 4.2e-20 100.9 77 66.2
Nitab4.5_0000140g0030 Nicotiana tabacum HOM05D002401 ORTHO05D007109 4.2e-20 100.9 77 66.2
Nitab4.5_0009644g0010 Nicotiana tabacum HOM05D002401 ORTHO05D007109 4.2e-20 100.9 77 64.9
PSO675G9034 Papaver somniferum HOM05D002401 ORTHO05D007109 4.2e-20 100.9 76 68.4
RcHm_v2.0_Chr5g0079311 Rosa chinensis HOM05D002401 ORTHO05D007109 4.2e-20 100.9 77 66.2
Sopen02g022370 Solanum pennellii HOM05D002401 ORTHO05D007109 4.2e-20 100.9 77 66.2
TPR.G21143 Trifolium pratense HOM05D002401 ORTHO05D007109 4.2e-20 100.9 77 66.2
arahy.Tifrunner.gnm1.ann1.EBKF2Y Arachis hypogaea HOM05D002401 ORTHO05D007109 5.5e-20 100.5 76 65.8
COL.COLO4_10387 Corchorus olitorius HOM05D002401 ORTHO05D007109 5.5e-20 100.5 76 68.4
Atru.chr3.2466 Acer truncatum HOM05D002401 ORTHO05D007109 7.2e-20 100.1 76 68.4
Glyma.10G256700 Glycine max HOM05D002401 ORTHO05D007109 7.2e-20 100.1 77 67.5
Lj1P432T20 Lonicera japonica HOM05D002401 ORTHO05D007109 7.2e-20 100.1 78 66.7
Lj1P433T23 Lonicera japonica HOM05D002401 ORTHO05D007109 7.2e-20 100.1 78 66.7
Sc16g0011880 Simmondsia chinensis HOM05D002401 ORTHO05D007109 7.2e-20 100.1 79 64.6
AUR62019226 Chenopodium quinoa HOM05D002401 ORTHO05D007109 1.2e-19 99.4 77 62.3
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 1.2e-19 99.4 77 66.2
Peaxi162Scf00062g00142 Petunia axillaris HOM05D002401 ORTHO05D007109 1.6e-19 99.0 77 64.9
Potri.001G014000 Populus trichocarpa HOM05D002401 ORTHO05D007109 1.6e-19 99.0 76 67.1
Solyc02g077460.3 Solanum lycopersicum HOM05D002401 ORTHO05D007109 1.6e-19 99.0 77 64.9
HanXRQChr02g0056731 Helianthus annuus HOM05D002401 ORTHO05D007109 2.1e-19 98.6 76 67.1
PGSC0003DMG400031756 Solanum tuberosum HOM05D002401 ORTHO05D007109 2.1e-19 98.6 76 65.8
PGSC0003DMG400031780 Solanum tuberosum HOM05D002401 ORTHO05D007109 2.1e-19 98.6 83 60.2
MBI19_g15086_MAGBIO Magnolia biondii HOM05D002401 ORTHO05D007109 2.8e-19 98.2 76 65.8
PGSC0003DMG400010797 Solanum tuberosum HOM05D002401 ORTHO05D007109 3.6e-19 97.8 77 63.6
Medtr1g106190 Medicago truncatula HOM05D002401 ORTHO05D007109 4.7e-19 97.4 77 64.9
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 4.7e-19 97.4 77 64.9
Psat6g214760 Pisum sativum HOM05D002401 ORTHO05D007109 8.0e-19 96.7 76 64.5
PGR119G1645 Punica granatum HOM05D002401 ORTHO05D007109 8.0e-19 96.7 77 62.3
ATR0307G126 Amborella trichopoda HOM05D002401 ORTHO05D007109 1.0e-18 96.3 77 62.3
SGA_v2.0_scaffold304G47925 Striga asiatica HOM05D002401 ORTHO05D007109 1.4e-18 95.9 75 66.7
Phvul.002G015200 Phaseolus vulgaris HOM05D002401 ORTHO05D007109 1.8e-18 95.5 71 67.6
PGR119G2292 Punica granatum HOM05D002401 ORTHO05D007109 2.3e-18 95.1 77 61.0
TWI32G0621 Tripterygium wilfordii HOM05D002401 ORTHO05D007109 3.0e-18 94.7 76 60.5
Dinv08058 Davidia involucrata HOM05D002401 ORTHO05D007109 4.0e-18 94.4 74 67.6
SEGI_03744 Sequoiadendron giganteum HOM05D002401 ORTHO05D007109 5.2e-18 94.0 80 57.5
SGA_v2.0_scaffold456G51922 Striga asiatica HOM05D002401 ORTHO05D007109 5.2e-18 94.0 75 66.7
DCAR_002030 Daucus carota HOM05D000038 ORTHO05D000143 6.8e-18 93.6 75 62.7
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 1.5e-17 92.4 70 65.7
Os03g0321800 Oryza sativa ssp. japonica HOM05D002401 ORTHO05D007109 2.0e-17 92.0 75 62.7
PSO017G5010 Papaver somniferum HOM05D002401 ORTHO05D007109 2.0e-17 92.0 77 61.0
PSO170G3695 Papaver somniferum HOM05D002401 ORTHO05D007109 3.4e-17 91.3 76 61.8
ATR0307G043 Amborella trichopoda HOM05D002401 ORTHO05D007109 4.4e-17 90.9 77 59.7
MD11G1020800 Malus domestica HOM05D002401 ORTHO05D007109 4.4e-17 90.9 76 63.2
GSVIVG01025351001 Vitis vinifera HOM05D002401 ORTHO05D007109 7.5e-17 90.1 44 93.2
unitig_52.g17159 Utricularia gibba HOM05D002401 ORTHO05D007109 9.8e-17 89.7 79 59.5
AL2G20100 Arabidopsis lyrata HOM05D002401 ORTHO05D007109 1.3e-16 89.4 77 61.0
Zm00001eb295550 Zea mays HOM05D002401 ORTHO05D007109 2.2e-16 88.6 75 61.3
CDE09G0839 Ceratophyllum demersum HOM05D002401 ORTHO05D007109 3.7e-16 87.8 75 60.0
Phvul.007G045700 Phaseolus vulgaris HOM05D002401 ORTHO05D007109 3.7e-16 87.8 76 59.2
unitig_52.g16826 Utricularia gibba HOM05D002401 ORTHO05D007109 1.1e-15 86.3 76 60.5
Sabra03G0155200 Salix brachista HOM05D002401 ORTHO05D007109 5.4e-15 84.0 42 90.5
Oeu007983.1 Olea europaea HOM05D002401 ORTHO05D007109 9.2e-15 83.2 45 80.0
Nitab4.5_0004389g0090 Nicotiana tabacum HOM05D002401 ORTHO05D007109 1.2e-14 82.8 64 65.6
SHI03518 Sapria himalayana HOM05D002401 ORTHO05D007109 1.6e-14 82.4 76 55.3
BraA08t35583Z Brassica rapa HOM05D002401 ORTHO05D007109 1.3e-13 79.3 44 84.1
A08p36800 Brassica napus HOM05D002401 ORTHO05D007109 5.0e-13 77.4 44 81.8
Mapoly0010s0076 Marchantia polymorpha HOM05D002401 ORTHO05D007109 8.6e-13 76.6 79 54.4
Pp3c27_7140 Physcomitrium patens HOM05D002401 ORTHO05D007109 3.3e-12 74.7 77 51.9
CBR_g18683 Chara braunii HOM05D002401 ORTHO05D007109 8.0e-11 70.1 80 43.8
AagrBONN_evm.TU.Sc2ySwM_362.1505 Anthoceros agrestis HOM05D002401 ORTHO05D007109 2.9e-08 61.6 76 48.7
Cre01.g010350 Chlamydomonas reinhardtii HOM05D002401 ORTHO05D007109 3.7e-08 61.2 72 47.2
SMO146G0125 Selaginella moellendorffii HOM05D002401 ORTHO05D007109 1.1e-07 59.7 37 70.3
SMO351G0240 Selaginella moellendorffii HOM05D002401 ORTHO05D007109 1.4e-07 59.3 43 58.1
MCO04G499 Micromonas commoda HOM05D002401 ORTHO05D007109 2.0e-06 55.5 79 40.5
CsaV3_2G007240 Cucumis sativus L. HOM05D008339 ORTHO05D007109 2.7e-06 55.1 53 54.7


User provided reference genes

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