Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 2.9e-207 724.9 358 100.0
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 4.8e-157 558.1 365 75.6
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 2.9e-154 548.9 364 73.9
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 4.6e-152 541.6 368 74.5
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 3.9e-151 538.5 362 73.8
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 1.4e-148 530.0 361 72.0
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 3.0e-143 512.3 365 68.2
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 5.1e-143 511.5 365 68.8
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 6.7e-143 511.1 372 68.5
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 4.3e-142 508.4 374 68.4
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 9.7e-142 507.3 365 67.9
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 1.3e-141 506.9 367 68.1
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 2.2e-141 506.1 365 69.3
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 4.8e-141 505.0 365 68.2
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 8.2e-141 504.2 361 70.4
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 2.4e-140 502.7 361 70.1
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 2.4e-140 502.7 370 68.1
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 2.4e-140 502.7 364 69.0
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 3.1e-140 502.3 371 67.1
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 5.3e-140 501.5 373 66.2
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 1.5e-139 500.0 368 67.4
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 2.0e-139 499.6 373 66.2
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 3.4e-139 498.8 358 72.1
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 3.4e-139 498.8 370 68.4
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 3.4e-139 498.8 368 67.1
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 4.5e-139 498.4 376 66.5
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 5.9e-139 498.0 372 66.9
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 1.0e-138 497.3 366 69.7
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 1.3e-138 496.9 361 68.1
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 3.8e-138 495.4 377 64.7
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 1.1e-137 493.8 377 66.6
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 2.5e-137 492.7 362 66.9
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 2.5e-137 492.7 364 67.3
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 3.2e-137 492.3 364 65.9
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 5.5e-137 491.5 373 65.1
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 7.2e-137 491.1 369 66.7
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 9.3e-137 490.7 369 64.0
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 7.9e-136 487.6 371 65.2
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 1.3e-135 486.9 375 66.1
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 1.8e-135 486.5 383 63.4
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.9e-134 483.0 373 64.3
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 9.7e-134 480.7 363 64.7
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 9.7e-134 480.7 371 64.7
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.7e-133 479.9 373 64.1
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 1.7e-133 479.9 351 68.7
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.8e-133 479.2 373 63.8
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 2.8e-133 479.2 369 65.6
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 8.2e-133 477.6 368 65.5
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 4.1e-132 475.3 370 65.4
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 5.3e-132 474.9 365 66.3
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 1.5e-131 473.4 365 65.8
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 2.0e-131 473.0 367 64.6
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.3e-130 470.3 373 64.3
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 2.2e-130 469.5 373 64.1
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 3.8e-130 468.8 375 62.9
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 1.1e-129 467.2 366 65.3
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 2.5e-129 466.1 368 66.0
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 2.5e-129 466.1 369 64.5
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 3.2e-129 465.7 350 66.3
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 9.4e-129 464.2 363 66.1
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 1.2e-128 463.8 359 66.9
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 2.1e-128 463.0 369 63.4
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 2.1e-128 463.0 375 61.9
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 2.0e-126 456.4 364 65.7
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 5.7e-126 454.9 364 65.4
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 7.4e-126 454.5 361 64.8
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 9.7e-126 454.1 364 65.4
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 9.7e-126 454.1 364 65.4
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 9.7e-126 454.1 365 62.5
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.3e-125 453.8 364 65.1
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 1.8e-124 449.9 372 61.6
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 2.4e-124 449.5 371 61.7
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 3.1e-124 449.1 366 63.1
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 9.1e-124 447.6 374 60.7
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 2.0e-123 446.4 372 60.8
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 2.0e-123 446.4 371 61.2
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 2.6e-123 446.0 371 60.4
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 2.6e-123 446.0 378 60.3
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 4.5e-123 445.3 360 61.7
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 5.9e-123 444.9 349 62.5
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 7.7e-123 444.5 374 60.2
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.2e-122 443.0 374 60.2
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 2.9e-122 442.6 372 61.0
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 2.9e-122 442.6 372 60.5
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 5.0e-122 441.8 364 60.7
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 6.5e-122 441.4 369 62.1
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 8.5e-122 441.0 363 61.2
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 8.5e-122 441.0 373 60.1
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 8.5e-122 441.0 368 61.4
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 1.1e-121 440.7 373 60.1
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 2.5e-121 439.5 373 59.8
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 2.5e-121 439.5 374 59.9
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 6.1e-120 434.9 371 59.3
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 6.1e-120 434.9 367 60.5
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 6.1e-120 434.9 360 60.8
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 1.4e-119 433.7 377 59.7
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 3.7e-117 425.6 381 58.0
DCAR_003746 Daucus carota HOM05D005127 ORTHO05D006022 4.8e-117 425.2 355 58.9
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 5.3e-116 421.8 366 59.6
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 8.8e-111 404.4 372 54.6
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.6e-107 393.7 359 54.6
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.1e-105 387.5 362 55.2
SalBow3G1912 Salvia bowleyana HOM05D005127 ORTHO05D006022 7.2e-105 384.8 336 59.5
SalBow3G2114 Salvia bowleyana HOM05D005127 ORTHO05D006022 7.2e-105 384.8 336 59.5
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 5.4e-100 368.6 383 51.4
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 1.4e-92 344.0 458 43.7
ECA238G3642 Erigeron canadensis HOM05D005127 ORTHO05D006022 5.9e-91 338.6 308 54.5
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 3.3e-89 332.8 371 48.2
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 6.8e-87 325.1 370 47.6
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 1.2e-86 324.3 359 48.2
CDE01G0221 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 2.6e-86 323.2 293 54.9
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 9.8e-78 294.7 375 43.5
Zm00001eb022160 Zea mays HOM05D005127 ORTHO05D006022 2.9e-77 293.1 354 46.3
Oeu045801.1 Olea europaea HOM05D005127 ORTHO05D006022 8.3e-77 291.6 335 48.1
Migut.H02247 Erythranthe guttata HOM05D005127 ORTHO05D006022 4.1e-76 289.3 338 46.2
SMO141G0134 Selaginella moellendorffii HOM05D005127 ORTHO05D006022 2.2e-69 266.9 362 40.9
Solyc02g081230.4 Solanum lycopersicum HOM05D005127 ORTHO05D006022 1.2e-64 251.1 182 63.7
Pp3c8_14800 Physcomitrium patens HOM05D005127 ORTHO05D006022 2.1e-64 250.4 378 39.9
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 1.4e-63 247.7 232 57.3
AUR62004769 Chenopodium quinoa HOM05D005127 ORTHO05D006022 7.8e-59 231.9 199 57.3
HPP92_020636 Vanilla planifolia HOM05D005127 ORTHO05D006022 2.2e-53 213.8 202 48.5
PSO063G7663 Papaver somniferum HOM05D005127 ORTHO05D006022 4.6e-51 206.1 173 61.8
Lsat_1_v5_gn_2_6720 Lactuca sativa HOM05D005127 ORTHO05D006022 1.9e-49 200.7 163 58.9
AagrBONN_evm.TU.Sc2ySwM_228.805 Anthoceros agrestis HOM05D005127 ORTHO05D006022 4.8e-48 196.1 252 41.3
AagrBONN_evm.TU.Sc2ySwM_117.2318 Anthoceros agrestis HOM05D005127 ORTHO05D006022 8.4e-45 185.3 251 41.0
Lsat_1_v5_gn_5_127001 Lactuca sativa HOM05D005127 ORTHO05D006022 9.3e-44 181.8 146 58.2
Gorai.009G350000 Gossypium raimondii HOM05D000154 ORTHO05D006022 3.5e-43 179.9 132 64.4
Gorai.004G162300 Gossypium raimondii HOM05D005127 ORTHO05D006022 4.6e-43 179.5 132 63.6
Gorai.005G117100 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.0e-38 164.1 132 60.6
CBR_g39794 Chara braunii HOM05D005127 ORTHO05D006022 9.9e-38 161.8 292 31.2
Gorai.011G105200 Gossypium raimondii HOM05D000154 ORTHO05D006022 5.3e-31 139.4 95 65.3
Gohir.D05G325801 Gossypium hirsutum HOM05D000154 ORTHO05D006022 2.0e-30 137.5 95 64.2
Gohir.D08G156000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.0e-29 135.2 95 63.2
RcHm_v2.0_Chr5g0027411 Rosa chinensis HOM05D005127 ORTHO05D006022 8.4e-29 132.1 243 41.6
Gorai.002G056700 Gossypium raimondii HOM05D005127 ORTHO05D006022 3.5e-27 126.7 95 58.9
Gohir.D04G098033 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.8e-26 124.4 100 59.0
Medtr5g076940 Medicago truncatula HOM05D005127 ORTHO05D006022 2.5e-25 120.6 108 58.3
RcHm_v2.0_Chr5g0042551 Rosa chinensis HOM05D005127 ORTHO05D006022 1.8e-23 114.4 112 50.0
MCO15G483 Micromonas commoda HOM05D005127 ORTHO05D006022 3.4e-22 110.2 287 26.1
RcHm_v2.0_Chr4g0398381 Rosa chinensis HOM05D005127 ORTHO05D006022 1.2e-19 101.7 89 68.5
Gohir.D02G103100 Gossypium hirsutum HOM05D000154 ORTHO05D006022 2.7e-19 100.5 72 61.1
Dinv28241 Davidia involucrata HOM05D005127 ORTHO05D006022 3.7e-16 90.1 111 53.2
vmacro09980 Vaccinium macrocarpon HOM05D000060 ORTHO05D003150 3.1e-15 87.0 76 59.2
GSVIVG01034874001 Vitis vinifera HOM05D005127 ORTHO05D006022 4.1e-15 86.7 79 58.2
GSVIVG01000363001 Vitis vinifera HOM05D005127 ORTHO05D006022 2.6e-14 84.0 65 63.1
AL3G25840 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 1.0e-13 82.0 70 61.4
AL8G37650 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 1.0e-13 82.0 70 61.4
Nn2g14442 Nelumbo nucifera HOM05D005127 ORTHO05D006022 6.5e-13 79.3 45 86.7
A09p28600 Brassica napus HOM05D005127 ORTHO05D006022 8.5e-13 79.0 58 67.2
GSVIVG01038053001 Vitis vinifera HOM05D005127 ORTHO05D006022 2.5e-12 77.4 59 62.7


User provided reference genes

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