Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034694 Camellia sinensis var. sinensis HOM05D005974 ORTHO05D007201 2.3e-232 808.5 405 100.0
Dinv23389 Davidia involucrata HOM05D005974 ORTHO05D007201 5.3e-197 691.0 417 84.2
Actinidia30286 Actinidia chinensis HOM05D005974 ORTHO05D007201 2.0e-196 689.1 418 83.3
COL.COLO4_20996 Corchorus olitorius HOM05D005974 ORTHO05D007201 5.0e-195 684.5 418 82.1
Rhsim02G0175300 Rhododendron simsii HOM05D005974 ORTHO05D007201 1.8e-192 676.0 419 80.7
HanXRQChr17g0539061 Helianthus annuus HOM05D005974 ORTHO05D007201 1.4e-189 666.4 413 80.4
Gohir.D06G091000 Gossypium hirsutum HOM05D005974 ORTHO05D007201 2.4e-189 665.6 418 79.2
Gorai.010G105000 Gossypium raimondii HOM05D005974 ORTHO05D007201 1.6e-188 662.9 417 78.9
Thecc.09G047600 Theobroma cacao HOM05D005974 ORTHO05D007201 1.6e-188 662.9 414 79.0
RcHm_v2.0_Chr6g0306611 Rosa chinensis HOM05D005974 ORTHO05D007201 2.7e-188 662.1 419 78.3
HanXRQChr06g0174221 Helianthus annuus HOM05D005974 ORTHO05D007201 4.5e-188 661.4 412 80.8
CsaV3_3G048470 Cucumis sativus L. HOM05D005974 ORTHO05D007201 5.9e-188 661.0 415 78.8
Nitab4.5_0001309g0090 Nicotiana tabacum HOM05D005974 ORTHO05D007201 7.7e-188 660.6 414 79.7
Ciclev10010686m.g Citrus clementina HOM05D005974 ORTHO05D007201 1.0e-187 660.2 421 79.3
Gohir.A06G091700 Gossypium hirsutum HOM05D005974 ORTHO05D007201 1.3e-187 659.8 418 78.7
Manes.03G060100 Manihot esculenta HOM05D005974 ORTHO05D007201 1.7e-187 659.4 419 78.5
Oeu006965.1 Olea europaea HOM05D005974 ORTHO05D007201 2.2e-187 659.1 413 79.2
GSVIVG01035293001 Vitis vinifera HOM05D005974 ORTHO05D007201 8.5e-187 657.1 417 78.2
MD15G1090800 Malus domestica HOM05D005974 ORTHO05D007201 4.2e-186 654.8 418 78.2
Migut.E01538 Erythranthe guttata HOM05D005974 ORTHO05D007201 7.2e-186 654.1 415 78.3
MSTRG.14030 Avicennia marina HOM05D005974 ORTHO05D007201 2.7e-185 652.1 419 78.3
FvH4_2g35300 Fragaria vesca HOM05D005974 ORTHO05D007201 2.7e-185 652.1 420 76.4
Cpa.g.sc7.214 Carica papaya HOM05D005974 ORTHO05D007201 3.6e-185 651.7 414 78.0
CiPaw.08G027100 Carya illinoinensis HOM05D005974 ORTHO05D007201 3.6e-185 651.7 418 78.7
MELO3C003472.2 Cucumis melo HOM05D005974 ORTHO05D007201 3.6e-185 651.7 424 77.1
Lsat_1_v5_gn_3_25800 Lactuca sativa HOM05D005974 ORTHO05D007201 6.1e-185 651.0 413 78.9
CAN.G208.66 Capsicum annuum HOM05D005974 ORTHO05D007201 8.0e-185 650.6 410 79.8
FAN27G3236 Fragaria x ananassa HOM05D005974 ORTHO05D007201 1.4e-184 649.8 420 76.2
TWI63G1635 Tripterygium wilfordii HOM05D005974 ORTHO05D007201 1.8e-184 649.4 418 77.0
ECA246G2549 Erigeron canadensis HOM05D005974 ORTHO05D007201 2.3e-184 649.0 412 78.4
Potri.003G158000 Populus trichocarpa HOM05D005974 ORTHO05D007201 5.2e-184 647.9 413 78.2
Eucgr.C02982 Eucalyptus grandis HOM05D005974 ORTHO05D007201 8.8e-184 647.1 410 79.8
FAN15G0062 Fragaria x ananassa HOM05D005974 ORTHO05D007201 3.4e-183 645.2 420 76.0
Solyc12g095850.2 Solanum lycopersicum HOM05D005974 ORTHO05D007201 3.4e-183 645.2 413 78.5
FAN20G0082 Fragaria x ananassa HOM05D005974 ORTHO05D007201 1.3e-182 643.3 419 75.9
SalBow1G5620 Salvia bowleyana HOM05D005974 ORTHO05D007201 1.3e-182 643.3 444 73.4
Atru.chr7.2057 Acer truncatum HOM05D005974 ORTHO05D007201 1.7e-182 642.9 418 78.0
Sopen12g031750 Solanum pennellii HOM05D005974 ORTHO05D007201 6.3e-182 641.0 413 78.0
PGR044G0481 Punica granatum HOM05D005974 ORTHO05D007201 1.8e-181 639.4 419 77.1
SGA_v2.0_scaffold169G38660 Striga asiatica HOM05D005974 ORTHO05D007201 3.1e-181 638.6 415 76.6
CANSAT80G2257 Cannabis sativa HOM05D005974 ORTHO05D007201 9.1e-181 637.1 415 76.6
Dinv27921 Davidia involucrata HOM05D005974 ORTHO05D007201 1.6e-180 636.3 417 77.9
PGR044G1757 Punica granatum HOM05D005974 ORTHO05D007201 7.7e-180 634.0 416 76.4
Cc08_g09880 Coffea canephora HOM05D005974 ORTHO05D007201 1.0e-179 633.6 411 78.3
PSO832G2350 Papaver somniferum HOM05D005974 ORTHO05D007201 6.5e-179 630.9 422 75.1
Sc09g0009450 Simmondsia chinensis HOM05D005974 ORTHO05D007201 6.5e-179 630.9 411 76.2
EL10Ac5g11988 Beta vulgaris HOM05D005974 ORTHO05D007201 1.9e-178 629.4 406 76.1
arahy.Tifrunner.gnm1.ann1.CL6SAC Arachis hypogaea HOM05D005974 ORTHO05D007201 6.1e-177 624.4 408 75.5
PSO063G5342 Papaver somniferum HOM05D005974 ORTHO05D007201 6.8e-176 620.9 422 73.7
Sabra03G0114600 Salix brachista HOM05D005974 ORTHO05D007201 6.8e-176 620.9 366 82.8
Lj1g0014442 Lotus japonicus HOM05D005974 ORTHO05D007201 3.4e-175 618.6 399 75.9
Medtr3g110360 Medicago truncatula HOM05D005974 ORTHO05D007201 1.3e-174 616.7 363 81.3
Aqoxy7G01418 Aquilegia oxysepala HOM05D005974 ORTHO05D007201 3.7e-174 615.1 344 85.2
Glyma.06G088000 Glycine max HOM05D005974 ORTHO05D007201 3.7e-174 615.1 400 76.0
Ca_15573_v3 Cicer arietinum L. HOM05D005974 ORTHO05D007201 1.1e-173 613.6 403 75.9
Glyma.04G086500 Glycine max HOM05D005974 ORTHO05D007201 1.4e-173 613.2 404 75.7
TPR.G12488 Trifolium pratense HOM05D005974 ORTHO05D007201 2.4e-173 612.5 402 74.1
ClCG11G015070 Citrullus lanatus HOM05D005974 ORTHO05D007201 3.5e-172 608.6 357 82.9
Lalb_Chr08g0242951 Lupinus albus HOM05D005974 ORTHO05D007201 3.8e-171 605.1 365 80.0
AUR62018617 Chenopodium quinoa HOM05D005974 ORTHO05D007201 2.8e-169 599.0 343 83.7
TAR624G1429 Trochodendron aralioides HOM05D005974 ORTHO05D007201 2.8e-169 599.0 346 85.0
Os01g0743400 Oryza sativa ssp. japonica HOM05D005974 ORTHO05D007201 8.0e-169 597.4 406 74.1
Phvul.009G111700 Phaseolus vulgaris HOM05D005974 ORTHO05D007201 8.0e-169 597.4 400 74.8
THA.LOC104803747 Tarenaya hassleriana HOM05D005974 ORTHO05D007201 3.4e-167 592.0 415 71.1
ATR0705G128 Amborella trichopoda HOM05D005974 ORTHO05D007201 4.4e-167 591.7 363 80.7
Nitab4.5_0001737g0060 Nicotiana tabacum HOM05D005974 ORTHO05D007201 4.9e-166 588.2 422 73.0
QL12p041028 Quercus lobata HOM05D005974 ORTHO05D007201 3.2e-165 585.5 371 79.2
MBI04_g20303_MAGBIO Magnolia biondii HOM05D005974 ORTHO05D007201 1.1e-162 577.0 414 72.7
Lj8C569G5 Lonicera japonica HOM05D000602 ORTHO05D001147 9.5e-162 573.9 417 71.2
BcaB01g04210 Brassica carinata HOM05D005974 ORTHO05D007201 1.4e-160 570.1 401 71.3
CARHR115390 Cardamine hirsuta HOM05D005974 ORTHO05D007201 6.8e-160 567.8 412 69.2
A03p15570 Brassica napus HOM05D005974 ORTHO05D007201 3.4e-159 565.5 392 72.7
Sp4g05700 Schrenkiella parvula HOM05D005974 ORTHO05D007201 3.4e-159 565.5 404 70.5
AT2G25840 Arabidopsis thaliana HOM05D005974 ORTHO05D007201 7.5e-159 564.3 407 69.3
Peaxi162Scf00064g01533 Petunia axillaris HOM05D005974 ORTHO05D007201 7.5e-159 564.3 405 72.8
BcaC01g06194 Brassica carinata HOM05D005974 ORTHO05D007201 1.7e-158 563.1 360 76.4
BolC3t14221H Brassica oleracea HOM05D005974 ORTHO05D007201 1.7e-158 563.1 360 76.4
AL4G17680 Arabidopsis lyrata HOM05D005974 ORTHO05D007201 3.7e-158 562.0 407 68.6
BraA04t17588Z Brassica rapa HOM05D005974 ORTHO05D007201 4.9e-158 561.6 405 70.4
A04p20060 Brassica napus HOM05D005974 ORTHO05D007201 1.6e-156 556.6 425 67.1
C04p55740 Brassica napus HOM05D005974 ORTHO05D007201 3.5e-156 555.4 425 67.1
BolC4t27100H Brassica oleracea HOM05D005974 ORTHO05D007201 3.5e-156 555.4 407 69.0
C03p18200 Brassica napus HOM05D005974 ORTHO05D007201 6.0e-156 554.7 352 75.9
arahy.Tifrunner.gnm1.ann1.I5HST9 Arachis hypogaea HOM05D005974 ORTHO05D007201 5.0e-155 551.6 408 69.1
BraA03t10849Z Brassica rapa HOM05D005974 ORTHO05D007201 8.6e-155 550.8 357 75.4
Thhalv10002003m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 3.3e-154 548.9 398 69.1
Thhalv10002006m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 5.6e-154 548.1 404 68.3
Psat5g020640 Pisum sativum HOM05D005974 ORTHO05D007201 9.5e-154 547.4 320 80.6
Carub.0004s0567 Capsella rubella HOM05D005974 ORTHO05D007201 3.6e-153 545.4 347 74.6
CDE02G2857 Ceratophyllum demersum HOM05D005974 ORTHO05D007201 3.6e-153 545.4 327 78.9
AagrBONN_evm.TU.Sc2ySwM_344.1805 Anthoceros agrestis HOM05D005974 ORTHO05D007201 1.8e-152 543.1 346 74.6
vmacro11047 Vaccinium macrocarpon HOM05D005974 ORTHO05D007201 2.0e-151 539.7 436 67.2
DCAR_018521 Daucus carota HOM05D005974 ORTHO05D007201 1.3e-150 537.0 299 86.3
HPP92_024453 Vanilla planifolia HOM05D005974 ORTHO05D007201 8.3e-150 534.3 364 73.4
Mapoly0137s0001 Marchantia polymorpha HOM05D005974 ORTHO05D007201 3.0e-147 525.8 369 69.6
Duzib187G1338 Durio zibethinus HOM05D005974 ORTHO05D007201 3.9e-147 525.4 364 74.7
BcaB06g29640 Brassica carinata HOM05D005974 ORTHO05D007201 8.6e-147 524.2 360 71.4
Sed0012339 Sechium edule HOM05D005974 ORTHO05D007201 1.5e-146 523.5 338 78.1
Aa31LG5G9820 Aethionema arabicum HOM05D005974 ORTHO05D007201 3.6e-145 518.8 377 67.9
AUR62007372 Chenopodium quinoa HOM05D005974 ORTHO05D007201 1.4e-141 506.9 364 70.3
Pp3c13_12220 Physcomitrium patens HOM05D005974 ORTHO05D007201 7.1e-141 504.6 357 68.6
SMO116G0397 Selaginella moellendorffii HOM05D005974 ORTHO05D007201 1.6e-137 493.4 342 68.4
SGA_v2.0_scaffold163G38058 Striga asiatica HOM05D005974 ORTHO05D007201 2.0e-135 486.5 346 72.3
Nn7g37050 Nelumbo nucifera HOM05D005974 ORTHO05D007201 4.2e-133 478.8 412 62.9
VMungo1309G1913 Vigna mungo HOM05D005974 ORTHO05D007201 7.1e-133 478.0 290 79.7
PRCOL_00006768 Prasinoderma coloniale HOM05D005974 ORTHO05D007201 3.6e-129 465.7 353 64.9
Prupe.1G445200 Prunus persica HOM05D005974 ORTHO05D007201 2.7e-124 449.5 299 75.3
Hund14385 Selenicereus undatus HOM05D005974 ORTHO05D007201 5.1e-123 445.3 254 85.4
Cre05.g238322 Chlamydomonas reinhardtii HOM05D005974 ORTHO05D007201 2.5e-122 443.0 361 60.1
MCO14G391 Micromonas commoda HOM05D005974 ORTHO05D007201 6.2e-121 438.3 382 58.1
Gohir.D06G090920 Gossypium hirsutum HOM05D005974 ORTHO05D007201 2.6e-103 379.8 213 86.4
HanXRQChr06g0174211 Helianthus annuus HOM05D005974 ORTHO05D007201 4.8e-97 359.0 203 85.7
Zm00001eb153590 Zea mays HOM05D005974 ORTHO05D007201 1.8e-91 340.5 250 69.6
BcaB06g29641 Brassica carinata HOM05D005974 ORTHO05D007201 3.6e-84 316.2 209 74.2
CBR_g26161 Chara braunii HOM05D005974 ORTHO05D007201 2.2e-78 297.0 204 70.6
Haze_27433 Corylus avellana HOM05D005974 ORTHO05D007201 2.3e-67 260.4 274 50.7
Cfa024571 Carpinus fangiana HOM05D005974 ORTHO05D007201 4.0e-51 206.5 382 37.2
Haze_21915 Corylus avellana HOM05D005974 ORTHO05D007201 1.7e-46 191.0 123 81.3
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 8.6e-46 188.7 217 51.6
Ah.07g201090 Amaranthus hybridus HOM05D005974 ORTHO05D007201 2.3e-43 180.6 246 44.7
SEGI_31887 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 2.6e-34 150.6 101 70.3
SEGI_40033 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 1.0e-30 138.7 85 71.8
Lsat_1_v5_gn_9_95260 Lactuca sativa HOM05D005974 ORTHO05D007201 8.1e-28 129.0 165 46.7
VMungo1309G1904 Vigna mungo HOM05D005974 ORTHO05D007201 1.1e-27 128.6 74 81.1
CDE08G1286 Ceratophyllum demersum HOM05D000581 ORTHO05D000412 2.0e-26 124.4 74 77.0
Hund30885 Selenicereus undatus HOM05D005974 ORTHO05D007201 1.9e-21 107.8 116 52.6
Hund30611 Selenicereus undatus HOM05D005974 ORTHO05D007201 5.6e-21 106.3 114 50.0
Gohir.A05G045550 Gossypium hirsutum HOM05D005974 ORTHO05D007201 2.4e-16 90.9 74 64.9
Gohir.D06G090940 Gossypium hirsutum HOM05D005974 ORTHO05D007201 1.0e-14 85.5 44 86.4
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 2.1e-12 77.8 110 45.5
arahy.Tifrunner.gnm1.ann1.8YH8YH Arachis hypogaea HOM05D005974 ORTHO05D007201 4.0e-11 73.6 93 47.3
arahy.Tifrunner.gnm1.ann1.05PEK3 Arachis hypogaea HOM05D005974 ORTHO05D038942 5.3e-11 73.2 100 39.0
TAR383G0536 Trochodendron aralioides HOM05D005974 ORTHO05D007201 4.2e-08 63.5 45 62.2
CBR_g26165 Chara braunii HOM05D005974 ORTHO05D007201 1.6e-07 61.6 59 57.6


User provided reference genes

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