Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034670 Camellia sinensis var. sinensis HOM05D048223 ORTHO05D110020 5.7e-49 197.2 96 100.0
CSS0035648 Camellia sinensis var. sinensis HOM05D048223 ORTHO05D111871 9.8e-49 196.4 96 99.0
Actinidia17730 Actinidia chinensis HOM05D000001 ORTHO05D000003 5.6e-20 100.9 98 55.1
GSVIVG01031345001 Vitis vinifera HOM05D000001 ORTHO05D000003 6.2e-19 97.4 103 51.5
Potri.016G029500 Populus trichocarpa HOM05D000001 ORTHO05D000003 3.5e-14 81.6 92 48.9
TAR636G3274 Trochodendron aralioides HOM05D000001 ORTHO05D000003 3.5e-14 81.6 79 51.9
Eucgr.B01355 Eucalyptus grandis HOM05D000001 ORTHO05D000003 2.3e-13 79.0 89 47.2
Cpa.g.sc898.3 Carica papaya HOM05D000001 ORTHO05D000003 3.9e-13 78.2 88 47.7
Nn5g27757 Nelumbo nucifera HOM05D000001 ORTHO05D000003 3.9e-13 78.2 95 45.3
Sabra16G0033400 Salix brachista HOM05D000001 ORTHO05D000003 3.9e-13 78.2 92 46.7
MSTRG.20350 Avicennia marina HOM05D000001 ORTHO05D000003 5.1e-13 77.8 102 43.1
Ciclev10030069m.g Citrus clementina HOM05D000001 ORTHO05D000003 6.6e-13 77.4 102 42.2
Aqoxy2G02410 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 8.6e-13 77.0 84 47.6
MBI05_g35189_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 2.5e-12 75.5 101 44.6
CiPaw.03G192100 Carya illinoinensis HOM05D000001 ORTHO05D000003 2.1e-11 72.4 80 46.2
TWI81G0676 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 2.8e-11 72.0 95 43.2
Haze_27026 Corylus avellana HOM05D000001 ORTHO05D000003 8.1e-11 70.5 97 42.3
CANSAT54G3007 Cannabis sativa HOM05D000001 ORTHO05D000003 1.1e-10 70.1 97 39.2
Cfa023071 Carpinus fangiana HOM05D000001 ORTHO05D000003 1.1e-10 70.1 97 41.2
Prupe.6G302800 Prunus persica HOM05D000001 ORTHO05D000003 1.4e-10 69.7 92 41.3
THA.LOC104820421 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 1.8e-10 69.3 91 44.0
QL08p044864 Quercus lobata HOM05D000001 ORTHO05D000003 5.2e-10 67.8 95 42.1
CsaV3_2G009550 Cucumis sativus L. HOM05D000001 ORTHO05D000003 6.8e-10 67.4 92 39.1
FvH4_6g08690 Fragaria vesca HOM05D000001 ORTHO05D000003 6.8e-10 67.4 91 39.6
FAN14G3558 Fragaria x ananassa HOM05D000001 ORTHO05D000003 6.8e-10 67.4 91 39.6
ClCG01G004060 Citrullus lanatus HOM05D000001 ORTHO05D000003 8.9e-10 67.0 92 39.1
MD04G1184300 Malus domestica HOM05D000001 ORTHO05D000003 8.9e-10 67.0 102 34.3
MD12G1197500 Malus domestica HOM05D000001 ORTHO05D000003 8.9e-10 67.0 92 39.1
Atru.chr12.1513 Acer truncatum HOM05D000001 ORTHO05D000003 1.5e-09 66.2 91 40.7
FAN09G2164 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.5e-09 66.2 100 37.0
MELO3C008756.2 Cucumis melo HOM05D000001 ORTHO05D000003 2.6e-09 65.5 92 38.0
RcHm_v2.0_Chr3g0458831 Rosa chinensis HOM05D000001 ORTHO05D000003 2.6e-09 65.5 91 38.5
Sed0017156 Sechium edule HOM05D000001 ORTHO05D000003 3.4e-09 65.1 85 42.4
FAN02G4515 Fragaria x ananassa HOM05D000001 ORTHO05D000003 5.8e-09 64.3 91 38.5
Prupe.6G026400 Prunus persica HOM05D000001 ORTHO05D000003 1.1e-07 60.1 83 37.3
CsaV3_7G023920 Cucumis sativus L. HOM05D000001 ORTHO05D000003 2.4e-07 58.9 93 36.6
Dinv44704 Davidia involucrata HOM05D000001 ORTHO05D000003 2.4e-07 58.9 83 34.9
Thecc.08G167800 Theobroma cacao HOM05D000001 ORTHO05D000003 2.4e-07 58.9 82 35.4
GSVIVG01033872001 Vitis vinifera HOM05D000001 ORTHO05D000003 2.4e-07 58.9 79 39.2
Aa31LG10G11370 Aethionema arabicum HOM05D000001 ORTHO05D000003 3.2e-07 58.5 88 35.2
MD11G1035200 Malus domestica HOM05D000001 ORTHO05D000003 3.2e-07 58.5 83 36.1
Solyc03g097850.1 Solanum lycopersicum HOM05D000001 ORTHO05D000003 3.2e-07 58.5 93 35.5
RcHm_v2.0_Chr5g0076611 Rosa chinensis HOM05D000001 ORTHO05D000003 4.2e-07 58.2 83 37.3
Sed0005887 Sechium edule HOM05D000001 ORTHO05D000003 4.2e-07 58.2 83 36.1
HPP92_004521 Vanilla planifolia HOM05D000001 ORTHO05D000003 4.2e-07 58.2 97 34.0
CiPaw.12G139800 Carya illinoinensis HOM05D000001 ORTHO05D000003 5.4e-07 57.8 85 34.1
PGSC0003DMG400019858 Solanum tuberosum HOM05D000001 ORTHO05D000003 7.1e-07 57.4 82 36.6
ClCG09G021480 Citrullus lanatus HOM05D000001 ORTHO05D000003 9.3e-07 57.0 93 35.5
ClCG10G018800 Citrullus lanatus HOM05D000001 ORTHO05D000003 9.3e-07 57.0 94 35.1
MELO3C024960.2 Cucumis melo HOM05D000001 ORTHO05D000003 9.3e-07 57.0 93 36.6
FvH4_3g42650 Fragaria vesca HOM05D000001 ORTHO05D000003 9.3e-07 57.0 83 37.3
MBI10_g04864_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 9.3e-07 57.0 97 35.1
Zm00001eb326090 Zea mays HOM05D000001 ORTHO05D009054 9.3e-07 57.0 83 37.3
Aqoxy1G00227 Aquilegia oxysepala HOM05D000001 ORTHO05D009054 1.2e-06 56.6 83 34.9
MELO3C019467.2 Cucumis melo HOM05D000001 ORTHO05D000003 1.2e-06 56.6 94 33.0
Migut.C00607 Erythranthe guttata HOM05D000001 ORTHO05D000003 1.2e-06 56.6 82 34.1
HPP92_017036 Vanilla planifolia HOM05D000112 ORTHO05D001918 1.6e-06 56.2 90 32.2
Peaxi162Scf00139g00112 Petunia axillaris HOM05D000001 ORTHO05D000003 2.1e-06 55.8 83 33.7
QL08p003394 Quercus lobata HOM05D000001 ORTHO05D000003 2.1e-06 55.8 83 32.5
Sabra02G0021900 Salix brachista HOM05D000001 ORTHO05D009054 2.1e-06 55.8 79 34.2
ClCG05G009630 Citrullus lanatus HOM05D000001 ORTHO05D000003 2.7e-06 55.5 94 33.0
Nitab4.5_0004583g0010 Nicotiana tabacum HOM05D000001 ORTHO05D000003 2.7e-06 55.5 83 33.7
RcHm_v2.0_Chr5g0076281 Rosa chinensis HOM05D000001 ORTHO05D000003 2.7e-06 55.5 83 36.1
Sed0003288 Sechium edule HOM05D000001 ORTHO05D000003 2.7e-06 55.5 82 34.1
Zm00001eb431340 Zea mays HOM05D000001 ORTHO05D000003 2.7e-06 55.5 96 36.5
Ciclev10013825m.g Citrus clementina HOM05D000001 ORTHO05D000003 3.5e-06 55.1 79 36.7
MELO3C009487.2 Cucumis melo HOM05D000001 ORTHO05D000003 3.5e-06 55.1 93 32.3
CsaV3_6G038880 Cucumis sativus L. HOM05D000001 ORTHO05D000003 3.5e-06 55.1 94 33.0
Lj1P892T36 Lonicera japonica HOM05D000001 ORTHO05D000003 3.5e-06 55.1 83 33.7
Os07g0588100 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D009054 3.5e-06 55.1 79 36.7
Potri.002G027800 Populus trichocarpa HOM05D000001 ORTHO05D009054 3.5e-06 55.1 79 34.2
Hund15501 Selenicereus undatus HOM05D000001 ORTHO05D000003 3.5e-06 55.1 85 30.6
TPR.G14783 Trifolium pratense HOM05D000001 ORTHO05D000003 3.5e-06 55.1 81 34.6
CAN.G637.48 Capsicum annuum HOM05D000001 ORTHO05D000003 4.6e-06 54.7 82 35.4
Thhalv10012670m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 4.6e-06 54.7 97 35.1
Nitab4.5_0004728g0020 Nicotiana tabacum HOM05D000001 ORTHO05D000003 4.6e-06 54.7 82 34.1
Nitab4.5_0009485g0010 Nicotiana tabacum HOM05D000001 ORTHO05D000003 4.6e-06 54.7 82 34.1
QL10p050762 Quercus lobata HOM05D000001 ORTHO05D009054 4.6e-06 54.7 79 34.2
FAN08G0635 Fragaria x ananassa HOM05D000001 ORTHO05D009054 6.0e-06 54.3 83 32.5
FAN13G3122 Fragaria x ananassa HOM05D000001 ORTHO05D009054 6.0e-06 54.3 83 32.5
FAN18G0991 Fragaria x ananassa HOM05D000001 ORTHO05D009054 6.0e-06 54.3 83 32.5
SEGI_03227 Sequoiadendron giganteum HOM05D000001 ORTHO05D006265 6.0e-06 54.3 79 38.0
PGSC0003DMG400022163 Solanum tuberosum HOM05D000001 ORTHO05D000003 6.0e-06 54.3 97 30.9
TWI77G0105 Tripterygium wilfordii HOM05D000001 ORTHO05D009340 6.0e-06 54.3 85 31.8
TAR624G0723 Trochodendron aralioides HOM05D000001 ORTHO05D004533 6.0e-06 54.3 83 32.5
Ciclev10010822m.g Citrus clementina HOM05D000001 ORTHO05D000003 7.8e-06 53.9 83 36.1
Haze_09849 Corylus avellana HOM05D000001 ORTHO05D000003 7.8e-06 53.9 83 32.5
Gohir.A01G205100 Gossypium hirsutum HOM05D000001 ORTHO05D000003 7.8e-06 53.9 79 34.2
Gohir.D01G194600 Gossypium hirsutum HOM05D000001 ORTHO05D000003 7.8e-06 53.9 79 34.2
Nitab4.5_0013922g0010 Nicotiana tabacum HOM05D000001 ORTHO05D000003 7.8e-06 53.9 83 32.5
Psat6g100920 Pisum sativum HOM05D000001 ORTHO05D000003 7.8e-06 53.9 97 34.0
Sabra16G0242700 Salix brachista HOM05D000001 ORTHO05D000003 7.8e-06 53.9 83 32.5
PGSC0003DMG400010006 Solanum tuberosum HOM05D000001 ORTHO05D009054 7.8e-06 53.9 88 33.0


User provided reference genes

Program Settings