Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 3.2e-50 201.4 100 100.0
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 1.0e-32 143.3 106 72.6
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 2.3e-32 142.1 104 73.1
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 8.1e-30 133.7 111 68.5
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 2.0e-28 129.0 107 67.3
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 1.0e-24 116.7 107 61.7
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 3.9e-24 114.8 110 61.8
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 5.1e-24 114.4 111 56.8
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 3.3e-23 111.7 104 62.5
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 3.3e-23 111.7 120 56.7
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 3.1e-21 105.1 111 57.7
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 3.1e-21 105.1 98 57.1
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 6.9e-21 104.0 100 64.0
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 9.0e-21 103.6 102 57.8
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.2e-20 103.2 102 56.9
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 1.5e-20 102.8 106 56.6
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 2.0e-20 102.4 105 56.2
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 2.0e-20 102.4 105 56.2
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 9.9e-20 100.1 99 58.6
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 9.9e-20 100.1 93 62.4
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 3.8e-19 98.2 103 56.3
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 8.4e-19 97.1 114 55.3
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.1e-18 96.7 102 55.9
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 1.1e-18 96.7 110 54.5
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 1.1e-18 96.7 116 52.6
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 1.4e-18 96.3 101 59.4
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 1.4e-18 96.3 101 59.4
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 1.4e-18 96.3 116 52.6
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 1.9e-18 95.9 94 60.6
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 3.2e-18 95.1 107 57.0
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 3.2e-18 95.1 103 57.3
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 5.4e-18 94.4 99 58.6
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 7.1e-18 94.0 114 53.5
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.2e-17 93.2 87 57.5
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.2e-17 93.2 99 56.6
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 1.6e-17 92.8 103 56.3
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 1.6e-17 92.8 110 53.6
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.7e-17 92.0 108 53.7
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 3.5e-17 91.7 96 57.3
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 3.5e-17 91.7 86 64.0
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 4.6e-17 91.3 94 57.4
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 6.0e-17 90.9 92 56.5
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 1.3e-16 89.7 86 58.1
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 1.8e-16 89.4 93 53.8
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 2.3e-16 89.0 89 53.9
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 3.0e-16 88.6 110 55.5
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 3.0e-16 88.6 99 55.6
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 5.1e-16 87.8 83 59.0
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 5.1e-16 87.8 104 54.8
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 6.7e-16 87.4 106 53.8
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 8.7e-16 87.0 101 51.5
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 1.1e-15 86.7 98 55.1
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 1.1e-15 86.7 98 55.1
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 1.5e-15 86.3 89 57.3
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 1.5e-15 86.3 99 54.5
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 1.5e-15 86.3 99 52.5
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 1.9e-15 85.9 97 52.6
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 2.5e-15 85.5 85 54.1
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 5.6e-15 84.3 110 47.3
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 5.6e-15 84.3 115 49.6
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 7.4e-15 84.0 89 55.1
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 9.6e-15 83.6 95 50.5
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 9.6e-15 83.6 95 53.7
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 9.6e-15 83.6 85 54.1
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 9.6e-15 83.6 102 55.9
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 1.6e-14 82.8 98 50.0
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.6e-14 82.8 118 47.5
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.6e-14 82.8 96 52.1
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 1.6e-14 82.8 91 56.0
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 2.1e-14 82.4 81 56.8
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 2.1e-14 82.4 82 52.4
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 2.1e-14 82.4 96 51.0
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 2.1e-14 82.4 89 51.7
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 2.1e-14 82.4 99 53.5
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.1e-14 82.4 95 49.5
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 2.8e-14 82.0 124 47.6
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 2.8e-14 82.0 124 47.6
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 3.7e-14 81.6 88 54.5
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 3.7e-14 81.6 118 47.5
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 4.8e-14 81.3 96 49.0
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 4.8e-14 81.3 95 53.7
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 1.1e-13 80.1 92 56.5
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.1e-13 80.1 115 47.8
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 1.1e-13 80.1 80 51.2
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.4e-13 79.7 82 51.2
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 1.8e-13 79.3 116 44.0
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 1.8e-13 79.3 87 54.0
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 1.8e-13 79.3 103 47.6
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 2.4e-13 79.0 82 52.4
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 2.4e-13 79.0 82 50.0
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 2.4e-13 79.0 82 50.0
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 2.4e-13 79.0 96 51.0
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 2.4e-13 79.0 87 51.7
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 3.1e-13 78.6 82 50.0
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 3.1e-13 78.6 82 52.4
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.1e-13 78.6 99 48.5
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 3.1e-13 78.6 99 48.5
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 3.1e-13 78.6 93 51.6
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 3.1e-13 78.6 114 48.2
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 3.1e-13 78.6 99 48.5
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 4.0e-13 78.2 92 56.5
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 5.3e-13 77.8 82 48.8
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 5.3e-13 77.8 90 52.2
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 5.3e-13 77.8 89 52.8
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 5.3e-13 77.8 97 53.6
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.2e-12 76.6 90 51.1
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 1.2e-12 76.6 103 46.6
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 1.2e-12 76.6 116 46.6
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.5e-12 76.3 104 47.1
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 2.0e-12 75.9 91 50.5
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 2.0e-12 75.9 94 52.1
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 2.0e-12 75.9 96 51.0
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.6e-12 75.5 99 47.5
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 3.4e-12 75.1 95 52.6
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 3.4e-12 75.1 85 50.6
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 3.4e-12 75.1 111 46.8
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 4.5e-12 74.7 98 46.9
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 7.6e-12 73.9 98 48.0
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.0e-11 73.6 82 48.8
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 1.0e-11 73.6 94 52.1
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 1.7e-11 72.8 91 49.5
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.7e-11 72.8 99 46.5
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 3.8e-11 71.6 84 45.2
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 3.8e-11 71.6 84 45.2
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 3.8e-11 71.6 90 50.0
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 3.8e-11 71.6 107 47.7
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 3.8e-11 71.6 70 51.4
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 4.9e-11 71.2 103 48.5
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 4.9e-11 71.2 122 38.5
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 4.9e-11 71.2 83 53.0
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 6.5e-11 70.9 87 52.9
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 6.5e-11 70.9 98 46.9
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 6.5e-11 70.9 123 43.9
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 8.4e-11 70.5 99 47.5
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 8.4e-11 70.5 80 55.0
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 1.1e-10 70.1 94 52.1
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 1.1e-10 70.1 97 50.5
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 1.1e-10 70.1 100 43.0
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.1e-10 70.1 90 50.0
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.4e-10 69.7 97 46.4
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.4e-10 69.7 86 47.7
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.4e-10 69.7 93 48.4
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.9e-10 69.3 92 50.0
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 2.5e-10 68.9 95 50.5
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 2.5e-10 68.9 95 50.5
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 2.5e-10 68.9 99 47.5
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 4.2e-10 68.2 88 45.5
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 4.2e-10 68.2 93 43.0
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 5.5e-10 67.8 92 48.9
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 5.5e-10 67.8 97 48.5
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 5.5e-10 67.8 91 49.5
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 5.5e-10 67.8 91 49.5
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 9.3e-10 67.0 90 51.1
Carub.0007s2777 Capsella rubella HOM05D003940 ORTHO05D004461 1.2e-09 66.6 106 44.3
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 2.7e-09 65.5 86 50.0
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 2.7e-09 65.5 99 45.5
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 2.7e-09 65.5 99 45.5
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 2.7e-09 65.5 99 45.5
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 2.7e-09 65.5 99 45.5
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 2.7e-09 65.5 83 48.2
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 2.7e-09 65.5 100 43.0
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 3.5e-09 65.1 99 45.5
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 1.0e-08 63.5 99 45.5
Manes.03G167050 Manihot esculenta HOM05D003940 ORTHO05D004461 1.0e-08 63.5 87 46.0
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 1.3e-08 63.2 100 43.0
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 1.3e-08 63.2 85 48.2
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 2.3e-08 62.4 96 43.8
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 3.9e-08 61.6 88 44.3
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 6.7e-08 60.8 89 48.3
Aqoxy2G03616 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 8.7e-08 60.5 104 43.3
FvH4_7g33480 Fragaria vesca HOM05D003940 ORTHO05D004461 1.9e-07 59.3 71 46.5
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 3.3e-07 58.5 93 45.2
HPP92_022626 Vanilla planifolia HOM05D027912 ORTHO05D004461 1.6e-06 56.2 83 45.8
ATR0680G398 Amborella trichopoda HOM05D003940 ORTHO05D004461 2.8e-06 55.5 84 40.5


User provided reference genes

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