Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 9.9e-77 290.0 147 100.0
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.4e-54 215.7 111 100.0
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 1.4e-46 189.9 109 87.2
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 1.8e-46 189.5 109 86.2
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 2.6e-45 185.7 106 86.8
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 3.4e-45 185.3 110 85.5
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.0e-44 183.7 110 86.4
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.0e-44 183.7 110 86.4
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 1.3e-44 183.3 110 83.6
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.8e-44 181.8 134 72.4
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 5.0e-44 181.4 110 82.7
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 1.4e-43 179.9 110 81.8
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 1.9e-43 179.5 110 80.9
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 2.5e-43 179.1 107 82.2
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 9.4e-43 177.2 107 81.3
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 9.4e-43 177.2 110 80.0
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 3.6e-42 175.3 110 79.1
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 6.1e-42 174.5 110 78.2
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.4e-41 173.3 113 81.4
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 1.4e-41 173.3 110 78.2
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 1.8e-41 172.9 110 79.1
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 1.8e-41 172.9 106 78.3
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 2.3e-41 172.6 110 80.0
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 3.0e-41 172.2 110 76.4
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 3.0e-41 172.2 110 76.4
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 3.0e-41 172.2 110 78.2
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 3.9e-41 171.8 108 80.6
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 5.2e-41 171.4 110 77.3
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 6.7e-41 171.0 110 75.5
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 6.7e-41 171.0 109 78.0
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 6.7e-41 171.0 110 80.9
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 8.8e-41 170.6 110 77.3
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 1.1e-40 170.2 110 76.4
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 1.1e-40 170.2 110 76.4
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 1.1e-40 170.2 106 82.1
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 1.5e-40 169.9 106 80.2
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 1.5e-40 169.9 111 80.2
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.0e-40 169.5 110 76.4
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 2.0e-40 169.5 110 76.4
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 2.0e-40 169.5 110 74.5
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 2.6e-40 169.1 110 78.2
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 2.6e-40 169.1 109 74.3
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 4.4e-40 168.3 110 77.3
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 5.7e-40 167.9 110 74.5
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 5.7e-40 167.9 106 81.1
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 7.4e-40 167.5 112 75.0
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 7.4e-40 167.5 109 76.1
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 9.7e-40 167.2 111 75.7
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 9.7e-40 167.2 106 80.2
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 1.3e-39 166.8 110 75.5
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 1.3e-39 166.8 110 74.5
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 1.3e-39 166.8 110 74.5
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.3e-39 166.8 111 76.6
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 1.3e-39 166.8 108 75.9
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 1.7e-39 166.4 106 80.2
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 4.8e-39 164.9 106 75.5
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 4.8e-39 164.9 110 76.4
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 6.3e-39 164.5 110 76.4
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 1.1e-38 163.7 110 76.4
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 1.4e-38 163.3 109 73.4
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 1.4e-38 163.3 106 75.5
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 2.4e-38 162.5 106 74.5
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 2.4e-38 162.5 110 73.6
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 3.1e-38 162.2 108 75.9
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 3.1e-38 162.2 111 73.9
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 4.1e-38 161.8 108 74.1
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 5.3e-38 161.4 108 74.1
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 7.0e-38 161.0 108 75.0
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 7.0e-38 161.0 106 74.5
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 9.1e-38 160.6 111 73.9
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 1.6e-37 159.8 105 74.3
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 1.6e-37 159.8 116 69.0
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 2.0e-37 159.5 111 72.1
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 2.0e-37 159.5 110 71.8
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 2.0e-37 159.5 111 72.1
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 2.6e-37 159.1 102 78.4
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 2.6e-37 159.1 110 72.7
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 4.5e-37 158.3 110 72.7
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 5.9e-37 157.9 106 73.6
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 7.7e-37 157.5 105 70.5
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 1.3e-36 156.8 110 70.0
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 1.3e-36 156.8 107 68.2
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.7e-36 156.4 107 68.2
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 2.2e-36 156.0 109 76.1
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 3.8e-36 155.2 106 70.8
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 6.5e-36 154.5 106 70.8
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 6.5e-36 154.5 106 70.8
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 8.5e-36 154.1 102 73.5
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 1.1e-35 153.7 106 69.8
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 1.5e-35 153.3 106 74.5
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 1.5e-35 153.3 110 70.0
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 7.2e-35 151.0 110 70.0
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 9.4e-35 150.6 106 73.6
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 9.4e-35 150.6 106 73.6
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 9.4e-35 150.6 106 73.6
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 2.1e-34 149.4 110 70.0
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 2.7e-34 149.1 106 72.6
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 4.7e-34 148.3 106 68.9
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 4.7e-34 148.3 106 72.6
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 8.0e-34 147.5 110 70.9
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.0e-33 147.1 102 72.5
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 1.8e-33 146.4 110 69.1
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 3.0e-33 145.6 110 68.2
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 4.0e-33 145.2 110 68.2
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 4.0e-33 145.2 83 86.7
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.2e-33 144.8 123 67.5
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 8.8e-33 144.1 110 68.2
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 8.8e-33 144.1 110 68.2
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 8.8e-33 144.1 110 68.2
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 8.8e-33 144.1 110 68.2
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 8.8e-33 144.1 110 68.2
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 1.2e-32 143.7 110 68.2
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 1.2e-32 143.7 110 67.3
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 2.6e-32 142.5 110 67.3
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 3.3e-32 142.1 110 67.3
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 4.4e-32 141.7 110 66.4
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 4.4e-32 141.7 106 64.2
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 4.4e-32 141.7 106 64.2
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 7.5e-32 141.0 110 64.5
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 7.5e-32 141.0 106 68.9
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 9.7e-32 140.6 110 66.4
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 9.7e-32 140.6 110 66.4
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 9.7e-32 140.6 122 66.4
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 1.7e-31 139.8 110 65.5
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 1.7e-31 139.8 110 66.4
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 2.2e-31 139.4 110 66.4
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 2.2e-31 139.4 110 66.4
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 3.7e-31 138.7 110 67.3
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 3.7e-31 138.7 110 67.3
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 4.8e-31 138.3 106 66.0
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 8.2e-31 137.5 110 65.5
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 1.1e-30 137.1 106 68.9
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 1.1e-30 137.1 109 67.0
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 1.8e-30 136.3 104 69.2
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 1.8e-30 136.3 104 69.2
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 1.8e-30 136.3 104 69.2
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 1.8e-30 136.3 104 69.2
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 2.4e-30 136.0 110 65.5
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 3.1e-30 135.6 102 65.7
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 1.6e-29 133.3 88 75.0
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 3.5e-29 132.1 102 66.7
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 1.7e-28 129.8 110 60.9
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 8.5e-28 127.5 124 59.7
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 1.1e-27 127.1 110 62.7
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 7.2e-27 124.4 88 71.6
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 8.0e-26 120.9 108 55.6
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 1.4e-25 120.2 104 53.8
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 2.0e-24 116.3 103 54.4
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 3.4e-24 115.5 142 44.4
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 5.7e-24 114.8 110 59.1
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.3e-23 113.6 102 53.9
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 1.7e-23 113.2 108 58.3
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 3.7e-23 112.1 104 51.9
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.8e-23 111.7 71 80.3
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 3.1e-22 109.0 102 52.0
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 1.2e-21 107.1 107 48.6
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 6.6e-20 101.3 71 69.0
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 2.8e-18 95.9 77 59.7
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 3.6e-18 95.5 104 45.2
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 4.7e-18 95.1 123 41.5
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 1.2e-16 90.5 76 61.8
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 1.4e-14 83.6 100 40.0
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 4.1e-14 82.0 75 53.3
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 1.2e-10 70.5 64 60.9
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 8.3e-07 57.8 93 37.6


User provided reference genes

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