Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034652 Camellia sinensis var. sinensis HOM05D003234 ORTHO05D003635 2.5e-38 161.8 90 100.0
Dinv31919 Davidia involucrata HOM05D003234 ORTHO05D003635 6.6e-31 137.1 107 74.8
TWI12G0861 Tripterygium wilfordii HOM05D003234 ORTHO05D003635 1.1e-30 136.3 107 75.7
Gohir.A05G180900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.9e-30 135.6 107 74.8
Gohir.D05G183900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.9e-30 135.6 107 74.8
Gorai.009G189400 Gossypium raimondii HOM05D003234 ORTHO05D003635 1.9e-30 135.6 107 74.8
Duzib093G1967 Durio zibethinus HOM05D003234 ORTHO05D003635 2.5e-30 135.2 107 73.8
Duzib116G0672 Durio zibethinus HOM05D003234 ORTHO05D003635 2.5e-30 135.2 107 73.8
Nitab4.5_0002710g0120 Nicotiana tabacum HOM05D003234 ORTHO05D003635 2.5e-30 135.2 109 74.3
THA.LOC104813762 Tarenaya hassleriana HOM05D003234 ORTHO05D003635 3.3e-30 134.8 107 75.7
Actinidia15481 Actinidia chinensis HOM05D003234 ORTHO05D003635 4.3e-30 134.4 106 75.5
Cpa.g.sc26.223 Carica papaya HOM05D003234 ORTHO05D003635 4.3e-30 134.4 107 72.9
Actinidia37965 Actinidia chinensis HOM05D003234 ORTHO05D003635 5.6e-30 134.0 107 74.8
CANSAT25G0014 Cannabis sativa HOM05D003234 ORTHO05D003635 5.6e-30 134.0 107 73.8
arahy.Tifrunner.gnm1.ann1.G2HAI2 Arachis hypogaea HOM05D003234 ORTHO05D003635 7.3e-30 133.7 108 73.1
Thecc.08G055600 Theobroma cacao HOM05D003234 ORTHO05D003635 7.3e-30 133.7 107 72.9
Aa31LG7G4760 Aethionema arabicum HOM05D003234 ORTHO05D003635 9.5e-30 133.3 107 73.8
Lj1g0024220 Lotus japonicus HOM05D003234 ORTHO05D003635 9.5e-30 133.3 108 73.1
Nitab4.5_0000337g0170 Nicotiana tabacum HOM05D003234 ORTHO05D003635 9.5e-30 133.3 109 73.4
Phvul.009G021200 Phaseolus vulgaris HOM05D003234 ORTHO05D003635 9.5e-30 133.3 108 72.2
Potri.002G013000 Populus trichocarpa HOM05D003234 ORTHO05D003635 9.5e-30 133.3 107 71.0
Potri.005G248300 Populus trichocarpa HOM05D003234 ORTHO05D003635 9.5e-30 133.3 107 72.0
VMungo1309G2978 Vigna mungo HOM05D003234 ORTHO05D003635 9.5e-30 133.3 108 71.3
CiPaw.07G140700 Carya illinoinensis HOM05D003234 ORTHO05D003635 1.2e-29 132.9 107 72.9
Thhalv10009165m.g Eutrema salsugineum HOM05D003234 ORTHO05D003635 1.2e-29 132.9 107 72.9
Thhalv10019348m.g Eutrema salsugineum HOM05D003234 ORTHO05D003635 1.2e-29 132.9 107 73.8
Hma1.2p1_1260F.1_g271060 Hydrangea macrophylla HOM05D003234 ORTHO05D003635 1.2e-29 132.9 106 73.6
Sp1g18170 Schrenkiella parvula HOM05D003234 ORTHO05D003635 1.2e-29 132.9 107 72.9
Carub.0001s1993 Capsella rubella HOM05D003234 ORTHO05D003635 1.6e-29 132.5 107 72.0
Peaxi162Scf00400g00314 Petunia axillaris HOM05D003234 ORTHO05D003635 1.6e-29 132.5 109 71.6
Rhsim06G0008900 Rhododendron simsii HOM05D003234 ORTHO05D003635 1.6e-29 132.5 107 72.9
arahy.Tifrunner.gnm1.ann1.VFC9DI Arachis hypogaea HOM05D003234 ORTHO05D003635 2.1e-29 132.1 107 72.0
Sc02g0009000 Simmondsia chinensis HOM05D003234 ORTHO05D003635 2.1e-29 132.1 107 70.1
TPR.G38123 Trifolium pratense HOM05D003234 ORTHO05D003635 2.1e-29 132.1 108 71.3
CARHR020910 Cardamine hirsuta HOM05D003234 ORTHO05D003635 2.8e-29 131.7 109 70.6
ClCG08G009600 Citrullus lanatus HOM05D003234 ORTHO05D003635 2.8e-29 131.7 107 72.0
Medtr3g115080 Medicago truncatula HOM05D003234 ORTHO05D003635 2.8e-29 131.7 109 71.6
Nn6g31830 Nelumbo nucifera HOM05D003234 ORTHO05D003635 2.8e-29 131.7 108 70.4
Solyc12g094510.2 Solanum lycopersicum HOM05D003234 ORTHO05D003635 2.8e-29 131.7 107 73.8
Sopen12g031400 Solanum pennellii HOM05D003234 ORTHO05D003635 2.8e-29 131.7 107 73.8
Glyma.06G019600 Glycine max HOM05D003234 ORTHO05D003635 3.6e-29 131.3 108 71.3
AT1G20460 Arabidopsis thaliana HOM05D003234 ORTHO05D003635 4.7e-29 131.0 107 71.0
BcaC08g47113 Brassica carinata HOM05D003234 ORTHO05D003635 4.7e-29 131.0 107 72.0
MELO3C026549.2 Cucumis melo HOM05D003234 ORTHO05D003635 4.7e-29 131.0 107 71.0
CsaV3_6G031700 Cucumis sativus L. HOM05D003234 ORTHO05D003635 4.7e-29 131.0 107 71.0
Glyma.04G019300 Glycine max HOM05D003234 ORTHO05D003635 4.7e-29 131.0 108 71.3
Manes.18G007200 Manihot esculenta HOM05D003234 ORTHO05D003635 4.7e-29 131.0 107 71.0
BcaB07g32048 Brassica carinata HOM05D003234 ORTHO05D003635 6.2e-29 130.6 107 72.0
BcaC05g25956 Brassica carinata HOM05D003234 ORTHO05D003635 6.2e-29 130.6 107 72.0
A06p16500 Brassica napus HOM05D003234 ORTHO05D003635 6.2e-29 130.6 107 72.0
BNapus_Darmor_BZH_scaffold_170p00030 Brassica napus HOM05D003234 ORTHO05D003635 6.2e-29 130.6 107 72.0
C05p19050 Brassica napus HOM05D003234 ORTHO05D003635 6.2e-29 130.6 107 72.0
BraA06t24756Z Brassica rapa HOM05D003234 ORTHO05D003635 6.2e-29 130.6 107 72.0
Carub.0002s2308 Capsella rubella HOM05D003234 ORTHO05D003635 6.2e-29 130.6 107 72.0
CiPaw.08G071600 Carya illinoinensis HOM05D003234 ORTHO05D003635 6.2e-29 130.6 108 71.3
Sp5g31330 Schrenkiella parvula HOM05D003234 ORTHO05D003635 6.2e-29 130.6 107 72.0
PGSC0003DMG400029411 Solanum tuberosum HOM05D003234 ORTHO05D003635 6.2e-29 130.6 107 72.9
GSVIVG01008697001 Vitis vinifera HOM05D003234 ORTHO05D003635 6.2e-29 130.6 107 72.9
Sed0016414 Sechium edule HOM05D003234 ORTHO05D003635 8.1e-29 130.2 107 70.1
ClCG00G002880 Citrullus lanatus HOM05D003234 ORTHO05D003635 1.1e-28 129.8 106 70.8
Duzib041G0372 Durio zibethinus HOM05D003234 ORTHO05D003635 1.1e-28 129.8 107 71.0
Prupe.1G356200 Prunus persica HOM05D003234 ORTHO05D003635 1.1e-28 129.8 107 71.0
PGR031G2527 Punica granatum HOM05D003234 ORTHO05D003635 1.1e-28 129.8 108 70.4
Gohir.A02G083600 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.4e-28 129.4 107 71.0
Gohir.D02G099100 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.4e-28 129.4 107 71.0
MD08G1004300 Malus domestica HOM05D003234 ORTHO05D003635 1.4e-28 129.4 108 69.4
MD15G1003700 Malus domestica HOM05D003234 ORTHO05D003635 1.4e-28 129.4 108 69.4
CAN.G208.7 Capsicum annuum HOM05D003234 ORTHO05D003635 1.8e-28 129.0 107 72.0
Cc10_g00860 Coffea canephora HOM05D003234 ORTHO05D003635 1.8e-28 129.0 107 71.0
Manes.05G140300 Manihot esculenta HOM05D003234 ORTHO05D003635 1.8e-28 129.0 107 72.0
Nitab4.5_0007869g0020 Nicotiana tabacum HOM05D003234 ORTHO05D003635 1.8e-28 129.0 107 72.0
A02p20490 Brassica napus HOM05D003234 ORTHO05D003635 2.3e-28 128.6 108 70.4
FAN27G0038 Fragaria x ananassa HOM05D003234 ORTHO05D003635 2.3e-28 128.6 107 70.1
Nitab4.5_0000699g0170 Nicotiana tabacum HOM05D003234 ORTHO05D003635 2.3e-28 128.6 107 71.0
MSTRG.22360 Avicennia marina HOM05D003234 ORTHO05D003635 3.1e-28 128.3 107 72.0
BraA02t07080Z Brassica rapa HOM05D003234 ORTHO05D003635 3.1e-28 128.3 109 69.7
FAN15G0717 Fragaria x ananassa HOM05D003234 ORTHO05D003635 3.1e-28 128.3 107 69.2
FAN20G3055 Fragaria x ananassa HOM05D003234 ORTHO05D003635 3.1e-28 128.3 107 69.2
Gorai.005G112900 Gossypium raimondii HOM05D003234 ORTHO05D003635 3.1e-28 128.3 107 71.0
RcHm_v2.0_Chr6g0304061 Rosa chinensis HOM05D003234 ORTHO05D003635 3.1e-28 128.3 107 69.2
C02p33350 Brassica napus HOM05D003234 ORTHO05D003635 4.0e-28 127.9 109 68.8
Psat0s3811g0040 Pisum sativum HOM05D003234 ORTHO05D003635 4.0e-28 127.9 108 70.4
Eucgr.F03542 Eucalyptus grandis HOM05D003234 ORTHO05D003635 5.2e-28 127.5 107 69.2
Sed0012631 Sechium edule HOM05D003234 ORTHO05D003635 5.2e-28 127.5 107 69.2
AT1G76185 Arabidopsis thaliana HOM05D003234 ORTHO05D003635 6.8e-28 127.1 107 70.1
BcaB02g07054 Brassica carinata HOM05D003234 ORTHO05D003635 6.8e-28 127.1 107 70.1
FvH4_2g37670 Fragaria vesca HOM05D003234 ORTHO05D003635 8.9e-28 126.7 107 68.2
Gohir.A05G254800 Gossypium hirsutum HOM05D003234 ORTHO05D003635 8.9e-28 126.7 107 71.0
BcaC03g15650 Brassica carinata HOM05D003234 ORTHO05D003635 1.2e-27 126.3 111 67.6
Gorai.009G267900 Gossypium raimondii HOM05D003234 ORTHO05D003635 1.2e-27 126.3 107 71.0
Hund05127 Selenicereus undatus HOM05D003234 ORTHO05D003635 1.2e-27 126.3 106 71.7
Gohir.D05G256400 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.5e-27 125.9 107 71.0
Lalb_Chr19g0131711 Lupinus albus HOM05D003234 ORTHO05D003635 1.5e-27 125.9 107 68.2
QL02p013773 Quercus lobata HOM05D003234 ORTHO05D003635 1.5e-27 125.9 130 60.8
Ciclev10002915m.g Citrus clementina HOM05D003234 ORTHO05D003635 2.0e-27 125.6 107 71.0
EL10Ac1g02011 Beta vulgaris HOM05D003234 ORTHO05D003635 2.6e-27 125.2 106 67.0
unitig_21.g20148 Utricularia gibba HOM05D003234 ORTHO05D003635 2.6e-27 125.2 107 68.2
Migut.N03196 Erythranthe guttata HOM05D003234 ORTHO05D003635 4.4e-27 124.4 107 69.2
Oeu011320.1 Olea europaea HOM05D003234 ORTHO05D003635 4.4e-27 124.4 107 71.0
vmacro04393 Vaccinium macrocarpon HOM05D003234 ORTHO05D003635 5.8e-27 124.0 107 68.2
SGA_v2.0_scaffold19G08601 Striga asiatica HOM05D003234 ORTHO05D003635 7.5e-27 123.6 107 70.1
unitig_744.g24608 Utricularia gibba HOM05D003234 ORTHO05D003635 2.9e-26 121.7 109 66.1
SHI08007 Sapria himalayana HOM05D003234 ORTHO05D003635 4.9e-26 120.9 114 64.0
THA.LOC104809745 Tarenaya hassleriana HOM05D003234 ORTHO05D003635 4.9e-26 120.9 107 68.2
Nitab4.5_0000588g0270 Nicotiana tabacum HOM05D003234 ORTHO05D003635 1.1e-25 119.8 107 69.2
Migut.C00924 Erythranthe guttata HOM05D003234 ORTHO05D003635 1.4e-25 119.4 107 66.4
Aqoxy5G01058 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 1.9e-25 119.0 109 66.1
C06p32180 Brassica napus HOM05D003234 ORTHO05D003635 1.9e-25 119.0 107 67.3
BraA07t30501Z Brassica rapa HOM05D003234 ORTHO05D003635 1.9e-25 119.0 106 67.9
MSTRG.25294 Avicennia marina HOM05D003234 ORTHO05D003635 2.4e-25 118.6 107 67.3
MBI05_g27809_MAGBIO Magnolia biondii HOM05D003234 ORTHO05D003635 5.4e-25 117.5 107 69.2
SGA_v2.0_scaffold275G46578 Striga asiatica HOM05D003234 ORTHO05D003635 7.1e-25 117.1 107 68.2
vmacro21831 Vaccinium macrocarpon HOM05D003234 ORTHO05D003635 7.1e-25 117.1 147 53.7
MSTRG.1123 Avicennia marina HOM05D003234 ORTHO05D003635 9.2e-25 116.7 107 62.6
A07p28600 Brassica napus HOM05D003234 ORTHO05D003635 1.2e-24 116.3 107 66.4
Lalb_Chr11g0061721 Lupinus albus HOM05D003234 ORTHO05D003635 1.6e-24 115.9 114 59.6
Lalb_Chr01g0008381 Lupinus albus HOM05D003234 ORTHO05D003635 2.1e-24 115.5 105 67.6
Peaxi162Scf01481g00038 Petunia axillaris HOM05D003234 ORTHO05D003635 2.7e-24 115.2 104 68.3
SalBow6G3231 Salvia bowleyana HOM05D003234 ORTHO05D003635 7.8e-24 113.6 107 66.4
Lsat_1_v5_gn_5_39760 Lactuca sativa HOM05D003234 ORTHO05D003635 1.7e-23 112.5 106 63.2
PGSC0003DMG401009896 Solanum tuberosum HOM05D003234 ORTHO05D003635 1.7e-23 112.5 109 67.0
Lalb_Chr08g0246351 Lupinus albus HOM05D003234 ORTHO05D003635 3.0e-23 111.7 126 55.6
HanXRQChr12g0366591 Helianthus annuus HOM05D003234 ORTHO05D003635 5.1e-23 110.9 107 60.7
Solyc04g082210.3 Solanum lycopersicum HOM05D003234 ORTHO05D003635 5.1e-23 110.9 109 66.1
Sopen04g035840 Solanum pennellii HOM05D003234 ORTHO05D003635 1.5e-22 109.4 109 65.1
Lsat_1_v5_gn_8_27741 Lactuca sativa HOM05D003234 ORTHO05D003635 3.3e-22 108.2 105 60.0
CAN.G311.99 Capsicum annuum HOM05D003234 ORTHO05D003635 7.3e-22 107.1 109 64.2
CDE02G2075 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 2.1e-21 105.5 106 60.4
Sabra05G0191800 Salix brachista HOM05D003234 ORTHO05D003635 4.4e-19 97.8 65 84.6
CDE09G0257 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 9.9e-19 96.7 105 57.1
Peaxi162Scf00064g01012 Petunia axillaris HOM05D003234 ORTHO05D003635 1.3e-18 96.3 65 84.6
Sabra02G0010200 Salix brachista HOM05D003234 ORTHO05D003635 1.7e-18 95.9 74 71.6
SEGI_11040 Sequoiadendron giganteum HOM05D003234 ORTHO05D003635 3.2e-17 91.7 106 50.0
TAR628G0584 Trochodendron aralioides HOM05D003234 ORTHO05D003635 5.4e-17 90.9 89 64.0
HanXRQChr14g0428701 Helianthus annuus HOM05D003234 ORTHO05D003635 7.1e-17 90.5 109 50.5
BraA07t31705Z Brassica rapa HOM05D003234 ORTHO05D003635 3.5e-16 88.2 63 79.4
ECA233G0660 Erigeron canadensis HOM05D003234 ORTHO05D003635 6.6e-15 84.0 88 54.5
unitig_746.g26818 Utricularia gibba HOM05D003604 ORTHO05D000209 2.5e-14 82.0 85 55.3
BolC5t30606H Brassica oleracea HOM05D003234 ORTHO05D003635 2.1e-13 79.0 73 64.4
ATR0733G120 Amborella trichopoda HOM05D003234 ORTHO05D003635 6.2e-13 77.4 106 45.3
Aqoxy6G01093 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 2.6e-11 72.0 107 45.8
Dinv39975 Davidia involucrata HOM05D003234 ORTHO05D003635 7.6e-11 70.5 89 46.1
Aqoxy5G01648 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 9.9e-11 70.1 105 43.8
MSTRG.23532 Avicennia marina HOM05D003234 ORTHO05D003635 1.7e-10 69.3 106 41.5
TAR625G0832 Trochodendron aralioides HOM05D003234 ORTHO05D003635 4.9e-10 67.8 65 67.7
CSS0031108 Camellia sinensis var. sinensis HOM05D003234 ORTHO05D003635 1.9e-09 65.9 106 44.3
ECA246G3301 Erigeron canadensis HOM05D003234 ORTHO05D003635 1.9e-09 65.9 107 39.3
Manes.01G134700 Manihot esculenta HOM05D003234 ORTHO05D003635 1.9e-09 65.9 106 44.3
PSO170G0681 Papaver somniferum HOM05D003234 ORTHO05D003635 4.2e-09 64.7 75 56.0
Lsat_1_v5_gn_3_77600 Lactuca sativa HOM05D003234 ORTHO05D003635 7.1e-09 63.9 105 37.1
Migut.H00998 Erythranthe guttata HOM05D003234 ORTHO05D003635 9.3e-09 63.5 106 40.6
Os03g0669600 Oryza sativa ssp. japonica HOM05D003234 ORTHO05D003635 2.7e-08 62.0 90 44.4
CiPaw.02G016600 Carya illinoinensis HOM05D003234 ORTHO05D003635 3.5e-08 61.6 106 41.5
PSO210G7820 Papaver somniferum HOM05D003234 ORTHO05D003635 4.6e-08 61.2 81 53.1
GSVIVG01018978001 Vitis vinifera HOM05D003234 ORTHO05D003635 4.6e-08 61.2 106 39.6
Actinidia36555 Actinidia chinensis HOM05D003234 ORTHO05D003635 6.0e-08 60.8 106 46.2
A07p15660 Brassica napus HOM05D003234 ORTHO05D003635 6.0e-08 60.8 46 71.7
A07p15770 Brassica napus HOM05D003234 ORTHO05D003635 6.0e-08 60.8 46 71.7
unitig_21.g20955 Utricularia gibba HOM05D003234 ORTHO05D003635 7.8e-08 60.5 105 38.1
HanXRQChr15g0482261 Helianthus annuus HOM05D003234 ORTHO05D003635 1.0e-07 60.1 106 35.8
Actinidia12120 Actinidia chinensis HOM05D003234 ORTHO05D003635 2.3e-07 58.9 106 46.2
CANSAT01G1184 Cannabis sativa HOM05D003234 ORTHO05D003635 3.0e-07 58.5 106 37.7
Hma1.2p1_0717F.1_g208130 Hydrangea macrophylla HOM05D003234 ORTHO05D003635 3.0e-07 58.5 105 37.1
Cc07_g09430 Coffea canephora HOM05D003234 ORTHO05D003635 6.6e-07 57.4 106 42.5
SEGI_02230 Sequoiadendron giganteum HOM05D003234 ORTHO05D003635 3.3e-06 55.1 70 45.7
TAR381G0421 Trochodendron aralioides HOM05D003234 ORTHO05D003635 4.3e-06 54.7 63 47.6
CARHR069740 Cardamine hirsuta HOM05D003234 ORTHO05D003635 7.3e-06 53.9 46 67.4


User provided reference genes

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