Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034651 Camellia sinensis var. sinensis HOM05D001991 ORTHO05D002030 8.4e-75 283.9 173 100.0
CSS0034955 Camellia sinensis var. sinensis HOM05D001991 ORTHO05D002030 2.8e-46 189.1 155 79.4
Actinidia20489 Actinidia chinensis HOM05D001991 ORTHO05D002030 1.4e-37 160.2 155 64.5
Dinv04963 Davidia involucrata HOM05D006293 ORTHO05D007971 1.1e-34 150.6 166 56.6
vmacro02254 Vaccinium macrocarpon HOM05D001991 ORTHO05D002030 1.9e-34 149.8 149 69.1
Dinv41971 Davidia involucrata HOM05D001991 ORTHO05D002030 4.7e-33 145.2 159 56.6
Lj3g0017262 Lotus japonicus HOM05D001991 ORTHO05D002030 6.3e-30 134.8 159 57.2
arahy.Tifrunner.gnm1.ann1.CXE5JY Arachis hypogaea HOM05D001991 ORTHO05D002030 2.6e-28 129.4 170 56.5
arahy.Tifrunner.gnm1.ann1.H3HBDV Arachis hypogaea HOM05D001991 ORTHO05D002030 2.6e-28 129.4 170 56.5
Psat7g174440 Pisum sativum HOM05D001991 ORTHO05D002030 7.7e-28 127.9 164 56.1
Glyma.11G105400 Glycine max HOM05D001991 ORTHO05D002030 2.2e-27 126.3 160 56.2
Phvul.011G033300 Phaseolus vulgaris HOM05D001991 ORTHO05D002030 5.0e-27 125.2 167 57.5
Solyc01g111200.3 Solanum lycopersicum HOM05D001991 ORTHO05D002030 6.5e-27 124.8 188 41.0
Sopen01g053250 Solanum pennellii HOM05D001991 ORTHO05D002030 6.5e-27 124.8 188 41.0
VMungo1127G1801 Vigna mungo HOM05D001991 ORTHO05D002030 1.9e-26 123.2 166 57.2
CSS0044440 Camellia sinensis var. sinensis HOM05D001991 ORTHO05D002030 1.2e-25 120.6 101 66.3
Haze_02190 Corylus avellana HOM05D001991 ORTHO05D002030 1.6e-25 120.2 153 54.9
Lalb_Chr01g0001671 Lupinus albus HOM05D001991 ORTHO05D002030 1.6e-25 120.2 163 60.7
Glyma.12G030200 Glycine max HOM05D001991 ORTHO05D002030 6.1e-25 118.2 168 58.9
Ca_03054_v3 Cicer arietinum L. HOM05D001991 ORTHO05D002030 8.0e-25 117.9 168 55.4
Sed0008982 Sechium edule HOM05D001991 ORTHO05D002030 1.4e-24 117.1 166 57.2
MELO3C013373.2 Cucumis melo HOM05D001991 ORTHO05D002030 3.0e-24 115.9 166 50.0
TAR376G0062 Trochodendron aralioides HOM05D001991 ORTHO05D002030 3.0e-24 115.9 177 45.2
Rhsim11G0188300 Rhododendron simsii HOM05D001991 ORTHO05D002030 5.2e-24 115.2 153 56.2
TAR628G0391 Trochodendron aralioides HOM05D001991 ORTHO05D002030 1.1e-23 114.0 176 44.3
Cfa005190 Carpinus fangiana HOM05D001991 ORTHO05D002030 2.0e-23 113.2 146 56.8
Eucgr.I01379 Eucalyptus grandis HOM05D001991 ORTHO05D002030 3.3e-23 112.5 165 52.1
unitig_21.g20015 Utricularia gibba HOM05D001991 ORTHO05D002030 3.3e-23 112.5 148 59.5
Medtr4g074040 Medicago truncatula HOM05D001991 ORTHO05D002030 7.5e-23 111.3 164 54.9
CiPaw.05G077800 Carya illinoinensis HOM05D001991 ORTHO05D002030 1.3e-22 110.5 150 57.3
Gorai.008G034500 Gossypium raimondii HOM05D001991 ORTHO05D002030 1.3e-22 110.5 159 52.2
Gohir.A04G122600 Gossypium hirsutum HOM05D001991 ORTHO05D002030 1.7e-22 110.2 158 50.0
HanXRQChr10g0298951 Helianthus annuus HOM05D001991 ORTHO05D002030 1.7e-22 110.2 152 51.3
Lj5P183T88 Lonicera japonica HOM05D001991 ORTHO05D002030 1.7e-22 110.2 145 53.1
Gohir.A12G038700 Gossypium hirsutum HOM05D001991 ORTHO05D002030 2.2e-22 109.8 157 52.2
Gohir.D04G164600 Gossypium hirsutum HOM05D001991 ORTHO05D002030 2.2e-22 109.8 160 50.0
Manes.11G090500 Manihot esculenta HOM05D001991 ORTHO05D002030 2.2e-22 109.8 158 46.2
ClCG02G004270 Citrullus lanatus HOM05D001991 ORTHO05D002030 2.8e-22 109.4 170 52.9
Peaxi162Scf00362g00949 Petunia axillaris HOM05D001991 ORTHO05D002030 2.8e-22 109.4 96 63.5
MD05G1116800 Malus domestica HOM05D001991 ORTHO05D002030 8.2e-22 107.8 154 53.9
Thecc.02G066300 Theobroma cacao HOM05D001991 ORTHO05D002030 8.2e-22 107.8 157 50.3
TWI75G0461 Tripterygium wilfordii HOM05D001991 ORTHO05D002030 8.2e-22 107.8 107 57.0
Duzib052G0141 Durio zibethinus HOM05D001991 ORTHO05D002030 1.4e-21 107.1 154 50.6
Nitab4.5_0000283g0030 Nicotiana tabacum HOM05D001991 ORTHO05D002030 1.4e-21 107.1 158 52.5
Nitab4.5_0000980g0040 Nicotiana tabacum HOM05D001991 ORTHO05D002030 1.4e-21 107.1 158 52.5
Gohir.D12G033600 Gossypium hirsutum HOM05D001991 ORTHO05D002030 2.4e-21 106.3 160 50.6
Sed0010328 Sechium edule HOM05D001991 ORTHO05D002030 2.4e-21 106.3 166 53.0
TWI79G0271 Tripterygium wilfordii HOM05D001991 ORTHO05D002030 2.4e-21 106.3 106 59.4
MD10G1119900 Malus domestica HOM05D001991 ORTHO05D002030 3.1e-21 105.9 158 55.1
Duzib248G0809 Durio zibethinus HOM05D001991 ORTHO05D002030 5.3e-21 105.1 94 60.6
Gorai.012G153000 Gossypium raimondii HOM05D001991 ORTHO05D002030 5.3e-21 105.1 95 58.9
Lalb_Chr03g0025001 Lupinus albus HOM05D001991 ORTHO05D002030 5.3e-21 105.1 111 60.4
Prupe.8G161300 Prunus persica HOM05D001991 ORTHO05D002030 5.3e-21 105.1 157 52.2
AT4G38710 Arabidopsis thaliana HOM05D001991 ORTHO05D002030 9.1e-21 104.4 106 58.5
SalBow3G1371 Salvia bowleyana HOM05D001991 ORTHO05D002030 9.1e-21 104.4 147 55.1
Lj9P390T58 Lonicera japonica HOM05D001991 ORTHO05D002030 1.6e-20 103.6 145 44.1
Potri.009G130200 Populus trichocarpa HOM05D001991 ORTHO05D002030 1.6e-20 103.6 161 46.0
QL11p047710 Quercus lobata HOM05D001991 ORTHO05D002030 1.6e-20 103.6 149 55.7
AL7G10600 Arabidopsis lyrata HOM05D001991 ORTHO05D002030 2.0e-20 103.2 158 43.0
unitig_578.g16748 Utricularia gibba HOM05D001991 ORTHO05D002030 2.0e-20 103.2 145 55.9
MELO3C020790.2 Cucumis melo HOM05D001991 ORTHO05D002030 2.6e-20 102.8 165 45.5
THA.LOC104804098 Tarenaya hassleriana HOM05D001991 ORTHO05D002030 2.6e-20 102.8 104 59.6
Sabra09G0099600 Salix brachista HOM05D001991 ORTHO05D002030 3.5e-20 102.4 161 44.7
Sabra09G0100900 Salix brachista HOM05D001991 ORTHO05D002030 3.5e-20 102.4 161 44.7
CsaV3_2G015760 Cucumis sativus L. HOM05D001991 ORTHO05D002030 4.5e-20 102.1 165 45.5
Sabra04G0113400 Salix brachista HOM05D001991 ORTHO05D002030 4.5e-20 102.1 90 61.1
Carub.0007s0058 Capsella rubella HOM05D001991 ORTHO05D002030 1.7e-19 100.1 96 60.4
GSVIVG01024072001 Vitis vinifera HOM05D001991 ORTHO05D002030 1.7e-19 100.1 96 58.3
Lsat_1_v5_gn_4_74740 Lactuca sativa HOM05D001991 ORTHO05D002030 3.8e-19 99.0 160 43.1
Potri.004G169100 Populus trichocarpa HOM05D001991 ORTHO05D002030 8.5e-19 97.8 163 46.6
CiPaw.06G124800 Carya illinoinensis HOM05D001991 ORTHO05D002030 1.1e-18 97.4 162 47.5
ClCG02G011610 Citrullus lanatus HOM05D001991 ORTHO05D002030 1.1e-18 97.4 168 42.9
Aa31LG6G16470 Aethionema arabicum HOM05D001991 ORTHO05D002030 1.5e-18 97.1 90 55.6
Cpa.g.sc37.183 Carica papaya HOM05D001991 ORTHO05D002030 1.9e-18 96.7 159 44.0
TPR.G19905 Trifolium pratense HOM05D001991 ORTHO05D002030 1.9e-18 96.7 163 45.4
BcaC01g00250 Brassica carinata HOM05D001991 ORTHO05D002030 3.2e-18 95.9 111 54.1
C03p77250 Brassica napus HOM05D001991 ORTHO05D002030 3.2e-18 95.9 111 54.1
BolC3t19979H Brassica oleracea HOM05D001991 ORTHO05D002030 3.2e-18 95.9 111 54.1
Nn5g29104 Nelumbo nucifera HOM05D001991 ORTHO05D002030 4.2e-18 95.5 173 41.6
SalBow6G0737 Salvia bowleyana HOM05D001991 ORTHO05D002030 5.5e-18 95.1 148 57.4
CARHR294420 Cardamine hirsuta HOM05D001991 ORTHO05D002030 9.4e-18 94.4 96 55.2
Sed0007163 Sechium edule HOM05D001991 ORTHO05D002030 1.2e-17 94.0 164 43.9
Gorai.005G252600 Gossypium raimondii HOM05D001991 ORTHO05D002030 1.6e-17 93.6 159 49.1
Gohir.D02G224800 Gossypium hirsutum HOM05D001991 ORTHO05D002030 2.7e-17 92.8 159 49.1
Thhalv10025358m.g Eutrema salsugineum HOM05D001991 ORTHO05D002030 3.6e-17 92.4 106 53.8
Ah.01g022660 Amaranthus hybridus HOM05D001991 ORTHO05D002030 4.7e-17 92.0 150 53.3
CANSAT25G2203 Cannabis sativa HOM05D001991 ORTHO05D002030 6.1e-17 91.7 168 39.9
Gohir.A03G203500 Gossypium hirsutum HOM05D001991 ORTHO05D002030 1.0e-16 90.9 104 51.0
PGR142G0784 Punica granatum HOM05D001991 ORTHO05D002030 1.0e-16 90.9 96 58.3
FAN20G2078 Fragaria x ananassa HOM05D001991 ORTHO05D002030 1.4e-16 90.5 152 46.1
Cc02_g16460 Coffea canephora HOM05D001991 ORTHO05D002030 1.8e-16 90.1 158 48.7
RcHm_v2.0_Chr6g0244781 Rosa chinensis HOM05D001991 ORTHO05D002030 1.8e-16 90.1 99 49.5
Sp7g37080 Schrenkiella parvula HOM05D001991 ORTHO05D002030 3.0e-16 89.4 109 53.2
Ciclev10028634m.g Citrus clementina HOM05D001991 ORTHO05D002030 4.0e-16 89.0 152 50.7
MSTRG.16883 Avicennia marina HOM05D001991 ORTHO05D002030 5.2e-16 88.6 148 52.0
MSTRG.20015 Avicennia marina HOM05D001991 ORTHO05D002030 5.2e-16 88.6 143 54.5
CDE05G1487 Ceratophyllum demersum HOM05D001991 ORTHO05D002030 3.4e-15 85.9 104 52.9
CDE05G1573 Ceratophyllum demersum HOM05D001991 ORTHO05D002030 9.8e-15 84.3 103 54.4
DCAR_022779 Daucus carota HOM05D001991 ORTHO05D002030 9.8e-15 84.3 142 47.2
SGA_v2.0_scaffold58G20423 Striga asiatica HOM05D001375 ORTHO05D001222 2.8e-14 82.8 91 56.0
Oeu055650.2 Olea europaea HOM05D001991 ORTHO05D002030 4.8e-14 82.0 96 54.2
Oeu060420.1 Olea europaea HOM05D001991 ORTHO05D002030 4.8e-14 82.0 97 52.6
BcaB03g12220 Brassica carinata HOM05D001991 ORTHO05D002030 6.3e-14 81.6 97 52.6
AUR62010082 Chenopodium quinoa HOM05D001991 ORTHO05D002030 6.3e-14 81.6 147 51.7
Sed0018167 Sechium edule HOM05D001991 ORTHO05D002030 8.3e-14 81.3 96 51.0
SGA_v2.0_scaffold32G13265 Striga asiatica HOM05D006293 ORTHO05D007971 8.3e-14 81.3 91 54.9
Oeu042186.2 Olea europaea HOM05D001991 ORTHO05D002030 1.4e-13 80.5 92 55.4
Sed0026833 Sechium edule HOM05D001991 ORTHO05D002030 3.1e-13 79.3 95 50.5
HPP92_022645 Vanilla planifolia HOM05D001991 ORTHO05D002030 3.1e-13 79.3 83 50.6
BraA08t34362Z Brassica rapa HOM05D001991 ORTHO05D002030 5.4e-13 78.6 108 50.0
FAN15G2134 Fragaria x ananassa HOM05D001991 ORTHO05D002030 5.4e-13 78.6 87 57.5
A08p24060 Brassica napus HOM05D001991 ORTHO05D002030 7.0e-13 78.2 108 50.0
FvH4_2g01750 Fragaria vesca HOM05D001991 ORTHO05D002030 7.0e-13 78.2 149 51.0
FAN27G1115 Fragaria x ananassa HOM05D001991 ORTHO05D002030 1.2e-12 77.4 87 56.3
COL.COLO4_17265 Corchorus olitorius HOM05D001991 ORTHO05D002030 1.6e-12 77.0 95 48.4
Oeu050537.1 Olea europaea HOM05D001991 ORTHO05D002030 2.0e-12 76.6 97 48.5
FAN24G0537 Fragaria x ananassa HOM05D001991 ORTHO05D002030 2.7e-12 76.3 149 51.0
ECA234G1535 Erigeron canadensis HOM05D001991 ORTHO05D007971 3.5e-12 75.9 155 49.7
Sc08g0003150 Simmondsia chinensis HOM05D001991 ORTHO05D002030 3.5e-12 75.9 149 40.9
CsaV3_7G000840 Cucumis sativus L. HOM05D001991 ORTHO05D002030 4.5e-12 75.5 171 43.9
MBI09_g29903_MAGBIO Magnolia biondii HOM05D001991 ORTHO05D002030 4.5e-12 75.5 164 47.6
Hund06409 Selenicereus undatus HOM05D001991 ORTHO05D002030 5.9e-12 75.1 96 53.1
EL10Ac9g21429 Beta vulgaris HOM05D001991 ORTHO05D002030 7.7e-12 74.7 149 49.0
Migut.B00116 Erythranthe guttata HOM05D001991 ORTHO05D002030 2.9e-11 72.8 91 50.5
PSO541G0135 Papaver somniferum HOM05D001991 ORTHO05D002030 7.2e-10 68.2 97 51.5
PSO675G7637 Papaver somniferum HOM05D001991 ORTHO05D002030 3.6e-09 65.9 97 48.5
Medtr8g089785 Medicago truncatula HOM05D001991 ORTHO05D002030 1.8e-08 63.5 86 45.3
PGSC0003DMG400014999 Solanum tuberosum HOM05D001991 ORTHO05D019379 2.3e-08 63.2 100 41.0
Os02g0595800 Oryza sativa ssp. japonica HOM05D001991 ORTHO05D002030 3.0e-08 62.8 93 45.2
HPP92_024687 Vanilla planifolia HOM05D001991 ORTHO05D002030 8.8e-08 61.2 99 46.5
Zm00001eb424960 Zea mays HOM05D001991 ORTHO05D002030 8.8e-08 61.2 78 52.6
CDE09G0346 Ceratophyllum demersum HOM05D000273 ORTHO05D000198 2.0e-07 60.1 96 49.0
Prupe.1G246800 Prunus persica HOM05D001991 ORTHO05D002030 2.0e-07 60.1 112 37.5
CARHR147420 Cardamine hirsuta HOM05D001991 ORTHO05D002030 2.6e-07 59.7 109 41.3
ATR0810G264 Amborella trichopoda HOM05D001991 ORTHO05D002030 3.4e-07 59.3 85 45.9
AL5G15170 Arabidopsis lyrata HOM05D001991 ORTHO05D002030 3.4e-07 59.3 115 39.1
MD16G1099600 Malus domestica HOM05D001991 ORTHO05D002030 3.4e-07 59.3 98 42.9
Nn6g35004 Nelumbo nucifera HOM05D001991 ORTHO05D002030 3.4e-07 59.3 87 43.7
Os04g0480100 Oryza sativa ssp. japonica HOM05D001991 ORTHO05D002030 3.4e-07 59.3 89 46.1
Lj4g0004810 Lotus japonicus HOM05D001991 ORTHO05D002030 4.4e-07 58.9 92 42.4
THA.LOC104805280 Tarenaya hassleriana HOM05D001991 ORTHO05D002030 4.4e-07 58.9 120 40.8
TAR629G2755 Trochodendron aralioides HOM05D001991 ORTHO05D002030 5.7e-07 58.5 112 39.3
Solyc05g013700.4 Solanum lycopersicum HOM05D001991 ORTHO05D002030 7.5e-07 58.2 112 38.4
Sopen05g008610 Solanum pennellii HOM05D001991 ORTHO05D002030 7.5e-07 58.2 112 38.4
SalBow6G1817 Salvia bowleyana HOM05D000195 ORTHO05D000248 9.8e-07 57.8 70 48.6
THA.LOC104825667 Tarenaya hassleriana HOM05D001991 ORTHO05D002030 9.8e-07 57.8 96 43.8
Haze_12267 Corylus avellana HOM05D001991 ORTHO05D002030 1.3e-06 57.4 112 37.5
Eucgr.B03270 Eucalyptus grandis HOM05D001991 ORTHO05D002030 1.3e-06 57.4 115 37.4
PGSC0003DMG400001628 Solanum tuberosum HOM05D001991 ORTHO05D002030 1.3e-06 57.4 32 75.0
TWI75G1322 Tripterygium wilfordii HOM05D001991 ORTHO05D002030 1.3e-06 57.4 117 38.5
vmacro16182 Vaccinium macrocarpon HOM05D001991 ORTHO05D002030 1.3e-06 57.4 99 40.4
Zm00001eb079540 Zea mays HOM05D001991 ORTHO05D002030 1.3e-06 57.4 83 48.2
Duzib251G0379 Durio zibethinus HOM05D001991 ORTHO05D002030 2.2e-06 56.6 112 38.4
MD13G1098600 Malus domestica HOM05D001991 ORTHO05D002030 2.2e-06 56.6 104 40.4
Thecc.02G262800 Theobroma cacao HOM05D001991 ORTHO05D002030 2.2e-06 56.6 111 39.6
Dinv15212 Davidia involucrata HOM05D001991 ORTHO05D002030 2.8e-06 56.2 109 39.4
Manes.13G022300 Manihot esculenta HOM05D001991 ORTHO05D002030 2.8e-06 56.2 115 38.3
PGR119G1839 Punica granatum HOM05D001991 ORTHO05D002030 2.8e-06 56.2 95 42.1
Zm00001eb246120 Zea mays HOM05D001991 ORTHO05D002030 2.8e-06 56.2 96 45.8
Thhalv10007279m.g Eutrema salsugineum HOM05D001991 ORTHO05D002030 3.7e-06 55.8 101 40.6
Nn3g16681 Nelumbo nucifera HOM05D001991 ORTHO05D002030 3.7e-06 55.8 112 36.6
PGR102G1816 Punica granatum HOM05D001991 ORTHO05D002030 3.7e-06 55.8 111 36.9
Sabra08G0140400 Salix brachista HOM05D001991 ORTHO05D002030 3.7e-06 55.8 111 36.0
Aa31LG1G1780 Aethionema arabicum HOM05D001991 ORTHO05D002030 4.9e-06 55.5 90 40.0
Cpa.g.sc33.43 Carica papaya HOM05D001991 ORTHO05D002030 4.9e-06 55.5 112 40.2
ECA233G4229 Erigeron canadensis HOM05D003359 ORTHO05D004472 4.9e-06 55.5 103 36.9
Gohir.D02G157500 Gossypium hirsutum HOM05D001991 ORTHO05D002030 4.9e-06 55.5 115 40.0
Gorai.005G176700 Gossypium raimondii HOM05D001991 ORTHO05D002030 4.9e-06 55.5 115 40.0
TAR371G0096 Trochodendron aralioides HOM05D001991 ORTHO05D002030 4.9e-06 55.5 115 38.3
Gohir.A03G133200 Gossypium hirsutum HOM05D001991 ORTHO05D002030 6.3e-06 55.1 115 40.0
Hma1.2p1_0815F.1_g222670 Hydrangea macrophylla HOM05D001991 ORTHO05D002030 6.3e-06 55.1 92 41.3
Aa31LG2G6130 Aethionema arabicum HOM05D001991 ORTHO05D002030 8.3e-06 54.7 108 38.0
Thhalv10003946m.g Eutrema salsugineum HOM05D001991 ORTHO05D002030 8.3e-06 54.7 115 38.3
Manes.12G021400 Manihot esculenta HOM05D001991 ORTHO05D002030 8.3e-06 54.7 109 35.8


User provided reference genes

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