Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034636 Camellia sinensis var. sinensis HOM05D007860 ORTHO05D009950 5.1e-31 137.1 69 100.0
Glyma.02G092000 Glycine max HOM05D007860 ORTHO05D009950 5.6e-14 80.5 43 83.7
Phvul.008G011200 Phaseolus vulgaris HOM05D007860 ORTHO05D009950 5.6e-14 80.5 43 83.7
VMungo1383G1282 Vigna mungo HOM05D007860 ORTHO05D009950 5.6e-14 80.5 43 83.7
Thecc.10G043200 Theobroma cacao HOM05D007860 ORTHO05D009950 7.3e-14 80.1 43 79.1
Cfa009596 Carpinus fangiana HOM05D007860 ORTHO05D009950 1.3e-13 79.3 43 83.7
Glyma.18G290700 Glycine max HOM05D007860 ORTHO05D009950 1.3e-13 79.3 43 81.4
vmacro04194 Vaccinium macrocarpon HOM05D007860 ORTHO05D009950 1.6e-13 79.0 43 86.0
Cc02_g07910 Coffea canephora HOM05D007860 ORTHO05D009950 3.6e-13 77.8 43 79.1
SalBow8G2293 Salvia bowleyana HOM05D007860 ORTHO05D009950 3.6e-13 77.8 43 83.7
Lalb_Chr11g0073451 Lupinus albus HOM05D007860 ORTHO05D009950 4.8e-13 77.4 43 79.1
Nn4g22694 Nelumbo nucifera HOM05D007860 ORTHO05D009950 4.8e-13 77.4 43 86.0
Gohir.D04G062700 Gossypium hirsutum HOM05D007860 ORTHO05D009950 6.2e-13 77.0 43 76.7
Gorai.012G070100 Gossypium raimondii HOM05D007860 ORTHO05D009950 6.2e-13 77.0 43 76.7
unitig_747.g21379 Utricularia gibba HOM05D007860 ORTHO05D009950 6.2e-13 77.0 43 79.1
Cc00_g31060 Coffea canephora HOM05D007860 ORTHO05D009950 8.1e-13 76.6 43 76.7
Psat3g182840 Pisum sativum HOM05D007860 ORTHO05D009950 8.1e-13 76.6 44 75.0
Sc10g0001510 Simmondsia chinensis HOM05D007860 ORTHO05D009950 8.1e-13 76.6 52 69.2
Aqoxy4G02946 Aquilegia oxysepala HOM05D007860 ORTHO05D009950 1.1e-12 76.3 43 79.1
CDE08G0617 Ceratophyllum demersum HOM05D007860 ORTHO05D009950 1.1e-12 76.3 40 85.0
CiPaw.01G285600 Carya illinoinensis HOM05D007860 ORTHO05D009950 1.4e-12 75.9 43 76.7
CiPaw.01G286200 Carya illinoinensis HOM05D007860 ORTHO05D009950 1.4e-12 75.9 43 76.7
Prupe.1G341800 Prunus persica HOM05D007860 ORTHO05D009950 1.4e-12 75.9 43 79.1
arahy.Tifrunner.gnm1.ann1.WKZY2Y Arachis hypogaea HOM05D007860 ORTHO05D009950 1.8e-12 75.5 42 81.0
Gohir.A05G349600 Gossypium hirsutum HOM05D007860 ORTHO05D009950 1.8e-12 75.5 43 74.4
TPR.G1333 Trifolium pratense HOM05D007860 ORTHO05D009950 1.8e-12 75.5 43 74.4
Gohir.A07G000500 Gossypium hirsutum HOM05D007860 ORTHO05D009950 2.4e-12 75.1 43 74.4
TWI63G0334 Tripterygium wilfordii HOM05D007860 ORTHO05D009950 2.4e-12 75.1 43 81.4
Lj1g0016082 Lotus japonicus HOM05D007860 ORTHO05D009950 3.1e-12 74.7 43 79.1
Nn3g16785 Nelumbo nucifera HOM05D007860 ORTHO05D009950 3.1e-12 74.7 43 69.8
Sabra10G0157800 Salix brachista HOM05D007860 ORTHO05D009950 3.1e-12 74.7 43 74.4
Lalb_Chr10g0091671 Lupinus albus HOM05D007860 ORTHO05D009950 5.3e-12 73.9 43 79.1
Migut.E01407 Erythranthe guttata HOM05D007860 ORTHO05D009950 6.9e-12 73.6 43 74.4
Migut.E01421 Erythranthe guttata HOM05D007860 ORTHO05D009950 6.9e-12 73.6 43 74.4
MD16G1008700 Malus domestica HOM05D007860 ORTHO05D009950 6.9e-12 73.6 44 75.0
Manes.09G185000 Manihot esculenta HOM05D007860 ORTHO05D009950 6.9e-12 73.6 43 72.1
RcHm_v2.0_Chr4g0445811 Rosa chinensis HOM05D007860 ORTHO05D009950 6.9e-12 73.6 43 76.7
Hund16092 Selenicereus undatus HOM05D007860 ORTHO05D009950 6.9e-12 73.6 43 81.4
Ciclev10033443m.g Citrus clementina HOM05D007860 ORTHO05D009950 9.0e-12 73.2 44 77.3
COL.COLO4_15031 Corchorus olitorius HOM05D007860 ORTHO05D009950 9.0e-12 73.2 44 77.3
Oeu017367.1 Olea europaea HOM05D007860 ORTHO05D009950 9.0e-12 73.2 43 79.1
MBI05_g22876_MAGBIO Magnolia biondii HOM05D007860 ORTHO05D009950 1.2e-11 72.8 40 85.0
Peaxi162Scf00760g00224 Petunia axillaris HOM05D007860 ORTHO05D009950 1.5e-11 72.4 43 72.1
Medtr7g026210 Medicago truncatula HOM05D007860 ORTHO05D009950 2.0e-11 72.0 43 74.4
Solyc04g150108.1 Solanum lycopersicum HOM05D007860 ORTHO05D009950 2.0e-11 72.0 43 74.4
PGSC0003DMG400027747 Solanum tuberosum HOM05D007860 ORTHO05D009950 2.0e-11 72.0 43 74.4
Actinidia13876 Actinidia chinensis HOM05D007860 ORTHO05D009950 3.4e-11 71.2 59 57.6
HPP92_012590 Vanilla planifolia HOM05D007860 ORTHO05D009950 4.5e-11 70.9 42 73.8
THA.LOC104817766 Tarenaya hassleriana HOM05D007860 ORTHO05D009950 5.8e-11 70.5 43 79.1
CsaV3_5G026630 Cucumis sativus L. HOM05D007860 ORTHO05D009950 1.3e-10 69.3 43 74.4
HanXRQChr08g0220681 Helianthus annuus HOM05D007860 ORTHO05D009950 1.3e-10 69.3 43 79.1
CAN.G786.12 Capsicum annuum HOM05D007860 ORTHO05D009950 1.7e-10 68.9 43 72.1
Lsat_1_v5_gn_8_15760 Lactuca sativa HOM05D007860 ORTHO05D009950 1.7e-10 68.9 43 76.7
AT4G26055 Arabidopsis thaliana HOM05D007860 ORTHO05D009950 2.2e-10 68.6 43 74.4
ClCG09G019790 Citrullus lanatus HOM05D007860 ORTHO05D009950 2.9e-10 68.2 43 72.1
AL7G26930 Arabidopsis lyrata HOM05D007860 ORTHO05D009950 3.8e-10 67.8 43 74.4
Potri.010G204200 Populus trichocarpa HOM05D007860 ORTHO05D009950 3.8e-10 67.8 43 67.4
Sed0021911 Sechium edule HOM05D007860 ORTHO05D009950 3.8e-10 67.8 43 74.4
MELO3C033702.2 Cucumis melo HOM05D007860 ORTHO05D009950 8.4e-10 66.6 43 72.1
Aa31LG3G410 Aethionema arabicum HOM05D007860 ORTHO05D009950 1.4e-09 65.9 43 69.8
SpUn0576_0010 Schrenkiella parvula HOM05D007860 ORTHO05D009950 3.2e-09 64.7 43 69.8
Zm00001eb205410 Zea mays HOM05D007860 ORTHO05D009950 3.2e-09 64.7 41 70.7
Carub.0007s1490 Capsella rubella HOM05D007860 ORTHO05D009950 5.4e-09 63.9 40 75.0
DCAR_011692 Daucus carota HOM05D007860 ORTHO05D009950 5.4e-09 63.9 43 69.8
SEGI_33557 Sequoiadendron giganteum HOM05D007860 ORTHO05D009950 7.1e-09 63.5 43 74.4
CARHR233560 Cardamine hirsuta HOM05D007860 ORTHO05D009950 1.2e-08 62.8 43 72.1
Thhalv10026736m.g Eutrema salsugineum HOM05D007860 ORTHO05D009950 1.6e-08 62.4 43 69.8
BcaC07g38219 Brassica carinata HOM05D007860 ORTHO05D009950 2.1e-08 62.0 43 67.4
A08p20930 Brassica napus HOM05D007860 ORTHO05D009950 2.1e-08 62.0 43 67.4
C08p09770 Brassica napus HOM05D002589 ORTHO05D002742 2.1e-08 62.0 43 67.4
BolC8t48648H Brassica oleracea HOM05D002589 ORTHO05D002742 2.1e-08 62.0 43 67.4
BraA08t34046Z Brassica rapa HOM05D007860 ORTHO05D009950 2.1e-08 62.0 43 67.4
EL10Ac2g04657 Beta vulgaris HOM05D007860 ORTHO05D009950 3.5e-08 61.2 50 56.0
C07p54670 Brassica napus HOM05D007860 ORTHO05D009950 7.9e-08 60.1 43 69.8
BolC7t45956H Brassica oleracea HOM05D007860 ORTHO05D009950 7.9e-08 60.1 43 69.8
A03p56460 Brassica napus HOM05D002589 ORTHO05D002742 1.0e-07 59.7 43 67.4
BraA03t14716Z Brassica rapa HOM05D007860 ORTHO05D009950 1.0e-07 59.7 43 67.4
FAN22G0325 Fragaria x ananassa HOM05D007860 ORTHO05D009950 1.8e-07 58.9 53 56.6
PSO170G0009 Papaver somniferum HOM05D007860 ORTHO05D009950 1.8e-07 58.9 40 72.5
Sp6g18800 Schrenkiella parvula HOM05D007860 ORTHO05D009950 5.6e-06 53.9 33 78.8


User provided reference genes

Program Settings