Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034635 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D003213 7.4e-91 337.0 154 100.0
CSS0020531 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 1.5e-70 269.6 154 83.1
CSS0007628 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 8.0e-69 263.8 151 82.1
CSS0002050 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 2.5e-62 242.3 150 74.7
CSS0041464 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 3.3e-54 215.3 158 66.5
CSS0024795 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 4.3e-54 214.9 158 66.5
CSS0008037 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 2.7e-24 115.9 74 67.6
CSS0038597 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 2.7e-24 115.9 74 67.6
CSS0013413 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 1.0e-23 114.0 68 70.6
Rhsim01G0119700 Rhododendron simsii HOM05D000107 ORTHO05D003213 1.7e-23 113.2 94 56.4
CSS0035901 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 3.0e-23 112.5 71 67.6
CSS0010490 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 6.6e-23 111.3 68 70.6
CSS0035075 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 6.6e-23 111.3 71 67.6
CSS0045099 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 1.1e-22 110.5 71 66.2
Rhsim09G0057000 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.9e-17 93.2 81 53.1
Rhsim01G0128800 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.4e-17 92.8 79 51.9
CSS0003322 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 3.2e-17 92.4 81 53.1
CSS0012803 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 3.2e-17 92.4 81 53.1
CSS0024740 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 3.2e-17 92.4 81 53.1
CSS0032482 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 3.2e-17 92.4 81 53.1
CSS0047068 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 3.2e-17 92.4 81 53.1
CSS0048301 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 3.2e-17 92.4 81 53.1
CSS0022362 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 7.1e-17 91.3 81 45.7
RhsimUnG0068500 Rhododendron simsii HOM05D000107 ORTHO05D000062 9.3e-17 90.9 96 45.8
Rhsim07G0185300 Rhododendron simsii HOM05D000107 ORTHO05D003213 1.6e-16 90.1 96 47.9
Rhsim07G0158800 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.3e-15 87.0 96 46.9
RhsimUnG0137300 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.3e-15 87.0 96 46.9
Rhsim10G0071800 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.7e-15 86.7 96 44.8
Rhsim04G0237300 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.3e-15 86.3 81 50.6
CSS0014387 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 3.0e-15 85.9 81 50.6
RhsimUnG0074200 Rhododendron simsii HOM05D000107 ORTHO05D000062 5.1e-15 85.1 79 50.6
CSS0037204 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D010234 2.5e-14 82.8 107 43.9
Rhsim01G0076100 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.8e-12 76.6 76 48.7
Rhsim10G0071900 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.2e-11 73.9 91 41.8
Migut.K00946 Erythranthe guttata HOM05D000107 ORTHO05D003213 1.5e-11 73.6 93 35.5
Rhsim06G0126900 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.5e-11 73.6 93 39.8
CSS0040020 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D010234 3.4e-11 72.4 33 93.9
Rhsim11G0005900 Rhododendron simsii HOM05D000107 ORTHO05D000062 4.5e-11 72.0 93 38.7
CSS0010902 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D010234 9.9e-11 70.9 55 61.8
CSS0041515 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D010234 9.9e-11 70.9 33 90.9
CANSAT78G0770 Cannabis sativa HOM05D000107 ORTHO05D000062 1.3e-10 70.5 89 39.3
Rhsim10G0126500 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.3e-10 70.5 93 38.7
Rhsim01G0140400 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.9e-10 69.3 49 63.3
Rhsim11G0024300 Rhododendron simsii HOM05D000107 ORTHO05D000062 4.9e-10 68.6 77 42.9
CSS0007178 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D010234 6.4e-10 68.2 150 32.7
CSS0017527 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D010234 6.4e-10 68.2 55 61.8
Migut.O00078 Erythranthe guttata HOM05D000107 ORTHO05D000062 8.4e-10 67.8 77 39.0
CSS0001367 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D010234 1.4e-09 67.0 33 84.8
COL.COLO4_24166 Corchorus olitorius HOM05D000107 ORTHO05D003213 1.4e-09 67.0 74 41.9
Rhsim05G0124400 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.4e-09 67.0 89 38.2
VMungo1309G1266 Vigna mungo HOM05D000107 ORTHO05D003213 1.4e-09 67.0 92 38.0
Rhsim11G0023200 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.4e-09 66.2 77 41.6
CAN.G89.9 Capsicum annuum HOM05D000107 ORTHO05D000062 3.2e-09 65.9 93 37.6
Rhsim03G0123300 Rhododendron simsii HOM05D000107 ORTHO05D000062 3.2e-09 65.9 114 31.6
VMungo0464G1358 Vigna mungo HOM05D000107 ORTHO05D000062 3.2e-09 65.9 79 40.5
CSS0047616 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D010234 5.5e-09 65.1 33 84.8
CANSAT56G2086 Cannabis sativa HOM05D024511 ORTHO05D003213 5.5e-09 65.1 112 30.4
CANSAT64G1192 Cannabis sativa HOM05D000107 ORTHO05D000062 5.5e-09 65.1 95 34.7
Lj1g0007648 Lotus japonicus HOM05D000107 ORTHO05D003213 5.5e-09 65.1 154 30.5
CANSAT56G0128 Cannabis sativa HOM05D024511 ORTHO05D003213 7.1e-09 64.7 112 29.5
Oeu027214.1 Olea europaea HOM05D000107 ORTHO05D003213 7.1e-09 64.7 119 32.8
CANSAT25G1518 Cannabis sativa HOM05D000107 ORTHO05D000062 9.3e-09 64.3 79 39.2
CANSAT56G3353 Cannabis sativa HOM05D024511 ORTHO05D003213 9.3e-09 64.3 112 29.5
AUR62028503 Chenopodium quinoa HOM05D000107 ORTHO05D000062 1.2e-08 63.9 77 39.0
Rhsim01G0019000 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.2e-08 63.9 77 46.8
Rhsim10G0157200 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.2e-08 63.9 80 41.2
RhsimUnG0032800 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.2e-08 63.9 80 41.2
VMungo0251G1001 Vigna mungo HOM05D000028 ORTHO05D001343 1.6e-08 63.5 92 35.9
VMungo0720G2941 Vigna mungo HOM05D000107 ORTHO05D000062 2.1e-08 63.2 79 39.2
CANSAT56G1321 Cannabis sativa HOM05D024511 ORTHO05D003213 2.7e-08 62.8 112 29.5
AUR62038589 Chenopodium quinoa HOM05D000107 ORTHO05D000233 2.7e-08 62.8 77 37.7
Hma1.2p1_0610F.1_g188590 Hydrangea macrophylla HOM05D000107 ORTHO05D003213 3.5e-08 62.4 80 40.0
Hma1.2p1_0902F.1_g234770 Hydrangea macrophylla HOM05D000107 ORTHO05D003213 3.5e-08 62.4 80 40.0
VMungo0540G0166 Vigna mungo HOM05D044776 ORTHO05D003213 3.5e-08 62.4 87 37.9
CANSAT54G1543 Cannabis sativa HOM05D000107 ORTHO05D000062 4.6e-08 62.0 91 35.2
CANSAT71G0016 Cannabis sativa HOM05D000107 ORTHO05D000062 4.6e-08 62.0 91 35.2
VMungo0331G0246 Vigna mungo HOM05D000107 ORTHO05D003213 6.0e-08 61.6 92 35.9
Oeu005851.1 Olea europaea HOM05D000107 ORTHO05D003213 1.0e-07 60.8 118 29.7
PSO729G0206 Papaver somniferum HOM05D000107 ORTHO05D000062 1.0e-07 60.8 78 38.5
Rhsim12G0007200 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.0e-07 60.8 78 39.7
CANSAT80G1283 Cannabis sativa HOM05D013174 ORTHO05D015289 1.3e-07 60.5 77 37.7
Hma1.2p1_1229F.1_g268720 Hydrangea macrophylla HOM05D000107 ORTHO05D003213 1.3e-07 60.5 81 40.7
Rhsim09G0074400 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.3e-07 60.5 92 40.2
RhsimUnG0018000 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.8e-07 60.1 80 40.0
FvH4_4g09213 Fragaria vesca HOM05D000107 ORTHO05D000062 2.3e-07 59.7 77 37.7
Rhsim02G0157200 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.3e-07 59.7 60 41.7
TWI59G1300 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 2.3e-07 59.7 89 37.1
Aqoxy6G01994 Aquilegia oxysepala HOM05D000107 ORTHO05D000062 3.0e-07 59.3 90 37.8
CANSAT25G3813 Cannabis sativa HOM05D054931 ORTHO05D003213 3.0e-07 59.3 84 34.5
ECA246G0108 Erigeron canadensis HOM05D000107 ORTHO05D000062 3.0e-07 59.3 93 30.1
HanXRQChr14g0441971 Helianthus annuus HOM05D000107 ORTHO05D000062 3.0e-07 59.3 103 35.9
Aqoxy2G02171 Aquilegia oxysepala HOM05D000107 ORTHO05D000062 3.9e-07 58.9 90 37.8
Oeu004802.1 Olea europaea HOM05D000107 ORTHO05D003213 3.9e-07 58.9 79 39.2
PSO455G0051 Papaver somniferum HOM05D000107 ORTHO05D000062 3.9e-07 58.9 77 42.9
SHI03580 Sapria himalayana HOM05D000616 ORTHO05D000233 3.9e-07 58.9 77 39.0
CANSAT54G2061 Cannabis sativa HOM05D000107 ORTHO05D000062 5.1e-07 58.5 109 30.3
CANSAT64G0358 Cannabis sativa HOM05D000107 ORTHO05D000062 5.1e-07 58.5 91 34.1
CANSAT64G3014 Cannabis sativa HOM05D000107 ORTHO05D000062 5.1e-07 58.5 109 30.3
RhsimUnG0041600 Rhododendron simsii HOM05D000107 ORTHO05D000062 5.1e-07 58.5 80 38.8
VMungo0464G1628 Vigna mungo HOM05D000107 ORTHO05D003213 5.1e-07 58.5 77 37.7
Aqoxy3G01844 Aquilegia oxysepala HOM05D000107 ORTHO05D000062 6.7e-07 58.2 77 40.3
CANSAT80G1036 Cannabis sativa HOM05D000107 ORTHO05D000062 6.7e-07 58.2 77 35.1
MBI08_g15727_MAGBIO Magnolia biondii HOM05D000107 ORTHO05D003213 6.7e-07 58.2 80 41.2
MBI19_g30599_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 6.7e-07 58.2 80 40.0
Rhsim08G0058900 Rhododendron simsii HOM05D000107 ORTHO05D000062 6.7e-07 58.2 64 46.9
CsaV3_7G011410 Cucumis sativus L. HOM05D000107 ORTHO05D003213 8.7e-07 57.8 101 35.6
ECA234G0175 Erigeron canadensis HOM05D000107 ORTHO05D000062 8.7e-07 57.8 91 30.8
PSO541G2266 Papaver somniferum HOM05D000107 ORTHO05D000062 8.7e-07 57.8 78 37.2
CANSAT54G2011 Cannabis sativa HOM05D000107 ORTHO05D000062 1.1e-06 57.4 77 36.4
CANSAT56G2540 Cannabis sativa HOM05D000107 ORTHO05D000062 1.1e-06 57.4 77 36.4
CANSAT64G1673 Cannabis sativa HOM05D000107 ORTHO05D000062 1.1e-06 57.4 93 39.8
CANSAT64G2733 Cannabis sativa HOM05D000107 ORTHO05D000062 1.1e-06 57.4 93 39.8
ECA236G3668 Erigeron canadensis HOM05D000107 ORTHO05D000062 1.1e-06 57.4 92 32.6
PSO017G5997 Papaver somniferum HOM05D000107 ORTHO05D000062 1.1e-06 57.4 77 41.6
QL01p005110 Quercus lobata HOM05D000107 ORTHO05D000062 1.1e-06 57.4 81 38.3
Rhsim01G0178900 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.1e-06 57.4 80 38.8
Sopen10g026370 Solanum pennellii HOM05D000107 ORTHO05D003213 1.1e-06 57.4 77 40.3
Atru.chr13.1787 Acer truncatum HOM05D000107 ORTHO05D003213 1.5e-06 57.0 92 35.9
Atru.chr13.1791 Acer truncatum HOM05D000107 ORTHO05D003213 1.5e-06 57.0 92 35.9
CsaV3_3G021750 Cucumis sativus L. HOM05D000107 ORTHO05D003213 1.5e-06 57.0 70 42.9
Gorai.010G175300 Gossypium raimondii HOM05D000107 ORTHO05D000062 1.5e-06 57.0 77 37.7
PSO782G1754 Papaver somniferum HOM05D000107 ORTHO05D000062 1.5e-06 57.0 77 41.6
Rhsim04G0055300 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.5e-06 57.0 81 39.5
CANSAT01G1055 Cannabis sativa HOM05D000107 ORTHO05D000062 1.9e-06 56.6 91 31.9
CsaV3_1G024200 Cucumis sativus L. HOM05D000107 ORTHO05D000062 1.9e-06 56.6 101 34.7
PSO170G2967 Papaver somniferum HOM05D000107 ORTHO05D000062 1.9e-06 56.6 77 41.6
PSO170G3239 Papaver somniferum HOM05D000107 ORTHO05D000062 1.9e-06 56.6 77 41.6
PSO409G0030 Papaver somniferum HOM05D000107 ORTHO05D000062 1.9e-06 56.6 77 41.6
PSO724G1337 Papaver somniferum HOM05D000107 ORTHO05D000062 1.9e-06 56.6 77 41.6
PSO782G4174 Papaver somniferum HOM05D000107 ORTHO05D000062 1.9e-06 56.6 77 41.6
Sopen01g021020 Solanum pennellii HOM05D000107 ORTHO05D009932 1.9e-06 56.6 76 40.8
CsaV3_1G031320 Cucumis sativus L. HOM05D000107 ORTHO05D003213 2.5e-06 56.2 80 38.8
CsaV3_6G019030 Cucumis sativus L. HOM05D000107 ORTHO05D003213 2.5e-06 56.2 80 38.8
CsaV3_6G032210 Cucumis sativus L. HOM05D000107 ORTHO05D003213 2.5e-06 56.2 80 38.8
FvH4_6g34821 Fragaria vesca HOM05D000107 ORTHO05D000062 2.5e-06 56.2 77 39.0
Sopen04g011400 Solanum pennellii HOM05D000107 ORTHO05D000062 2.5e-06 56.2 65 44.6
ECA233G0019 Erigeron canadensis HOM05D000107 ORTHO05D000062 3.3e-06 55.8 79 29.1
PSO210G2589 Papaver somniferum HOM05D000107 ORTHO05D000062 3.3e-06 55.8 77 40.3
vmacro17806 Vaccinium macrocarpon HOM05D008549 ORTHO05D010234 3.3e-06 55.8 54 42.6
ECA246G2093 Erigeron canadensis HOM05D000107 ORTHO05D000062 4.3e-06 55.5 95 37.9
Os08g0215200 Oryza sativa ssp. japonica HOM05D000107 ORTHO05D003213 4.3e-06 55.5 77 33.8
PSO210G2525 Papaver somniferum HOM05D000107 ORTHO05D000062 4.3e-06 55.5 89 36.0
Rhsim02G0154800 Rhododendron simsii HOM05D000107 ORTHO05D000062 4.3e-06 55.5 77 39.0
Hund01184 Selenicereus undatus HOM05D000107 ORTHO05D006908 4.3e-06 55.5 105 32.4
Sopen12g016210 Solanum pennellii HOM05D000107 ORTHO05D009932 4.3e-06 55.5 76 40.8
Atru.chr4.455 Acer truncatum HOM05D000107 ORTHO05D000062 5.6e-06 55.1 100 38.0
CANSAT78G1485 Cannabis sativa HOM05D000107 ORTHO05D000062 5.6e-06 55.1 92 32.6
FvH4_1g29805 Fragaria vesca HOM05D000107 ORTHO05D000062 5.6e-06 55.1 90 35.6
MD03G1146400 Malus domestica HOM05D000107 ORTHO05D000062 5.6e-06 55.1 77 37.7
PSO384G1138 Papaver somniferum HOM05D000107 ORTHO05D000062 5.6e-06 55.1 77 40.3
PSO478G1106 Papaver somniferum HOM05D000107 ORTHO05D000062 5.6e-06 55.1 77 40.3
PSO782G0564 Papaver somniferum HOM05D000107 ORTHO05D000062 5.6e-06 55.1 77 40.3
RhsimUnG0071800 Rhododendron simsii HOM05D000107 ORTHO05D000062 5.6e-06 55.1 64 45.3
SHI46859 Sapria himalayana HOM05D000107 ORTHO05D000062 5.6e-06 55.1 77 37.7
Hund24116 Selenicereus undatus HOM05D006468 ORTHO05D006908 5.6e-06 55.1 80 35.0
Sopen02g004720 Solanum pennellii HOM05D000107 ORTHO05D000062 5.6e-06 55.1 65 43.1
Sopen07g016840 Solanum pennellii HOM05D000107 ORTHO05D000062 5.6e-06 55.1 65 41.5
Sopen10g014350 Solanum pennellii HOM05D000107 ORTHO05D000062 5.6e-06 55.1 76 39.5
Sopen10g018620 Solanum pennellii HOM05D000107 ORTHO05D000062 5.6e-06 55.1 76 40.8
VMungo1383G3054 Vigna mungo HOM05D000107 ORTHO05D003213 5.6e-06 55.1 82 35.4
CANSAT01G2457 Cannabis sativa HOM05D000107 ORTHO05D000062 7.4e-06 54.7 77 33.8
CANSAT80G1543 Cannabis sativa HOM05D000107 ORTHO05D000062 7.4e-06 54.7 77 33.8
FvH4_2g18191 Fragaria vesca HOM05D000539 ORTHO05D000233 7.4e-06 54.7 77 39.0
Sopen01g009930 Solanum pennellii HOM05D000107 ORTHO05D000062 7.4e-06 54.7 65 43.1
Sopen03g018530 Solanum pennellii HOM05D000004 ORTHO05D009932 7.4e-06 54.7 76 40.8
Atru.chr1.1855 Acer truncatum HOM05D000107 ORTHO05D000062 9.6e-06 54.3 137 35.8
Atru.chr6.157 Acer truncatum HOM05D000107 ORTHO05D000062 9.6e-06 54.3 111 33.3
CANSAT56G1875 Cannabis sativa HOM05D009677 ORTHO05D011883 9.6e-06 54.3 90 35.6
Ciclev10030123m.g Citrus clementina HOM05D000107 ORTHO05D000062 9.6e-06 54.3 101 27.7
MELO3C033501.2 Cucumis melo HOM05D000539 ORTHO05D003213 9.6e-06 54.3 64 37.5
ECA246G3180 Erigeron canadensis HOM05D000107 ORTHO05D000062 9.6e-06 54.3 79 29.1
SHI29589 Sapria himalayana HOM05D000107 ORTHO05D003213 9.6e-06 54.3 77 39.0
Sopen01g017910 Solanum pennellii HOM05D000107 ORTHO05D000062 9.6e-06 54.3 76 40.8


User provided reference genes

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