Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034631 Camellia sinensis var. sinensis HOM05D001299 ORTHO05D009516 2.6e-109 398.7 193 100.0
CSS0023575 Camellia sinensis var. sinensis HOM05D001299 ORTHO05D009516 1.3e-55 220.3 212 59.0
CSS0019604 Camellia sinensis var. sinensis HOM05D001299 ORTHO05D009516 3.8e-52 208.8 194 62.9
Actinidia32353 Actinidia chinensis HOM05D001299 ORTHO05D009516 7.2e-51 204.5 210 57.1
CSS0007807 Camellia sinensis var. sinensis HOM05D001299 ORTHO05D009516 8.8e-49 197.6 170 65.3
CSS0046492 Camellia sinensis var. sinensis HOM05D001299 ORTHO05D009516 8.8e-49 197.6 170 65.3
GSVIVG01037941001 Vitis vinifera HOM05D001299 ORTHO05D009516 1.3e-47 193.7 210 53.8
TAR626G1915 Trochodendron aralioides HOM05D001299 ORTHO05D009516 7.0e-46 188.0 210 53.3
Potri.011G155500 Populus trichocarpa HOM05D001299 ORTHO05D009516 2.0e-45 186.4 210 51.9
Lj6g0006807 Lotus japonicus HOM05D001299 ORTHO05D009516 4.5e-45 185.3 210 51.4
Haze_05959 Corylus avellana HOM05D001299 ORTHO05D009516 5.9e-45 184.9 212 50.0
Lj1A1156T42 Lonicera japonica HOM05D001299 ORTHO05D009516 7.7e-45 184.5 216 50.9
Cfa000759 Carpinus fangiana HOM05D001299 ORTHO05D009516 1.3e-44 183.7 210 51.0
Sed0008848 Sechium edule HOM05D001299 ORTHO05D009516 3.8e-44 182.2 210 50.5
FvH4_3g11560 Fragaria vesca HOM05D001299 ORTHO05D009516 5.0e-44 181.8 210 49.0
FAN16G0158 Fragaria x ananassa HOM05D001299 ORTHO05D009516 5.0e-44 181.8 210 49.0
Ca_00935_v3 Cicer arietinum L. HOM05D001299 ORTHO05D009516 8.5e-44 181.0 210 51.0
Phvul.006G122300 Phaseolus vulgaris HOM05D001299 ORTHO05D009516 1.1e-43 180.6 210 50.0
ClCG01G008880 Citrullus lanatus HOM05D001299 ORTHO05D009516 1.5e-43 180.3 219 47.9
Medtr2g032540 Medicago truncatula HOM05D001299 ORTHO05D009516 1.9e-43 179.9 210 51.0
MSTRG.16317 Avicennia marina HOM05D001299 ORTHO05D009516 4.2e-43 178.7 210 49.0
Cc09_g07140 Coffea canephora HOM05D001299 ORTHO05D009516 4.2e-43 178.7 212 48.1
FAN25G0007 Fragaria x ananassa HOM05D001299 ORTHO05D009516 4.2e-43 178.7 210 48.6
COL.COLO4_26895 Corchorus olitorius HOM05D001299 ORTHO05D009516 5.5e-43 178.3 210 49.0
FAN21G1530 Fragaria x ananassa HOM05D001299 ORTHO05D009516 5.5e-43 178.3 210 48.6
VMungo0540G0517 Vigna mungo HOM05D001299 ORTHO05D009516 5.5e-43 178.3 210 49.5
Nn7g37865 Nelumbo nucifera HOM05D001299 ORTHO05D009516 7.2e-43 177.9 210 49.5
RcHm_v2.0_Chr5g0018511 Rosa chinensis HOM05D001299 ORTHO05D009516 9.4e-43 177.6 210 48.1
Sabra11G0144300 Salix brachista HOM05D001299 ORTHO05D009516 9.4e-43 177.6 210 50.5
Glyma.15G136200 Glycine max HOM05D001299 ORTHO05D009516 1.2e-42 177.2 210 49.0
Psat1g163720 Pisum sativum HOM05D001299 ORTHO05D009516 1.2e-42 177.2 210 50.5
CANSAT35G1957 Cannabis sativa HOM05D001299 ORTHO05D009516 1.6e-42 176.8 207 50.2
Lalb_Chr15g0089001 Lupinus albus HOM05D001299 ORTHO05D009516 1.6e-42 176.8 210 50.0
Solyc02g069620.4 Solanum lycopersicum HOM05D001299 ORTHO05D009516 3.6e-42 175.6 210 47.6
Eucgr.D01028 Eucalyptus grandis HOM05D001299 ORTHO05D009516 4.7e-42 175.3 210 46.7
Prupe.4G102900 Prunus persica HOM05D001299 ORTHO05D009516 4.7e-42 175.3 210 47.6
CSS0009698 Camellia sinensis var. sinensis HOM05D001299 ORTHO05D009516 6.1e-42 174.9 174 60.3
Ciclev10015984m.g Citrus clementina HOM05D001299 ORTHO05D009516 8.0e-42 174.5 210 47.6
Manes.03G067266 Manihot esculenta HOM05D001299 ORTHO05D009516 8.0e-42 174.5 210 48.6
CiPaw.10G111000 Carya illinoinensis HOM05D001299 ORTHO05D009516 1.0e-41 174.1 213 48.4
Duzib235G0189 Durio zibethinus HOM05D001299 ORTHO05D009516 1.4e-41 173.7 210 48.1
SalBow8G0840 Salvia bowleyana HOM05D001299 ORTHO05D009516 1.4e-41 173.7 210 48.1
SalBow8G5388 Salvia bowleyana HOM05D001299 ORTHO05D009516 1.4e-41 173.7 210 48.1
MBI18_g26477_MAGBIO Magnolia biondii HOM05D001299 ORTHO05D009516 1.8e-41 173.3 210 48.1
MD10G1240700 Malus domestica HOM05D001299 ORTHO05D009516 2.3e-41 172.9 210 46.7
Sopen02g018750 Solanum pennellii HOM05D001299 ORTHO05D009516 2.3e-41 172.9 210 47.1
TPR.G15970 Trifolium pratense HOM05D001299 ORTHO05D009516 2.3e-41 172.9 210 50.0
Thecc.06G007400 Theobroma cacao HOM05D001299 ORTHO05D009516 8.8e-41 171.0 210 47.6
arahy.Tifrunner.gnm1.ann1.85QD0P Arachis hypogaea HOM05D001299 ORTHO05D009516 1.2e-40 170.6 210 48.6
MELO3C021811.2 Cucumis melo HOM05D001299 ORTHO05D009516 1.2e-40 170.6 235 44.3
CAN.G675.34 Capsicum annuum HOM05D001299 ORTHO05D009516 2.0e-40 169.9 206 47.6
Gorai.010G142100 Gossypium raimondii HOM05D001299 ORTHO05D009516 5.7e-40 168.3 210 46.7
Gohir.D06G121900 Gossypium hirsutum HOM05D001299 ORTHO05D009516 7.5e-40 167.9 210 46.7
CSS0011897 Camellia sinensis var. sinensis HOM05D001299 ORTHO05D009516 9.8e-40 167.5 174 57.5
Atru.chr10.662 Acer truncatum HOM05D001299 ORTHO05D009516 1.7e-39 166.8 211 46.9
PGSC0003DMG400021135 Solanum tuberosum HOM05D001299 ORTHO05D009516 1.7e-39 166.8 261 42.1
Lsat_1_v5_gn_1_130040 Lactuca sativa HOM05D001299 ORTHO05D009516 2.2e-39 166.4 210 46.2
CSS0007995 Camellia sinensis var. sinensis HOM05D001299 ORTHO05D009516 3.7e-39 165.6 168 58.9
THA.LOC104806244 Tarenaya hassleriana HOM05D001299 ORTHO05D009516 6.3e-39 164.9 206 46.1
arahy.Tifrunner.gnm1.ann1.ZN1LAP Arachis hypogaea HOM05D001299 ORTHO05D009516 1.1e-38 164.1 206 48.1
Migut.M01940 Erythranthe guttata HOM05D001299 ORTHO05D009516 1.8e-38 163.3 210 45.7
HanXRQChr11g0341271 Helianthus annuus HOM05D001299 ORTHO05D009516 7.0e-38 161.4 210 45.2
Nitab4.5_0007613g0040 Nicotiana tabacum HOM05D001299 ORTHO05D009516 3.5e-37 159.1 239 41.8
Nitab4.5_0010415g0020 Nicotiana tabacum HOM05D001299 ORTHO05D009516 5.9e-37 158.3 239 41.8
TWI38G0147 Tripterygium wilfordii HOM05D001299 ORTHO05D009516 5.9e-37 158.3 210 44.8
Aa31LG9G8690 Aethionema arabicum HOM05D001299 ORTHO05D009516 1.0e-36 157.5 209 45.5
BolC7t43265H Brassica oleracea HOM05D001299 ORTHO05D009516 1.0e-36 157.5 217 41.9
A06p47140 Brassica napus HOM05D001299 ORTHO05D009516 1.3e-36 157.1 209 43.5
BcaC06g34545 Brassica carinata HOM05D001299 ORTHO05D009516 2.3e-36 156.4 210 42.4
C07p27350 Brassica napus HOM05D001299 ORTHO05D009516 2.3e-36 156.4 217 41.5
BraA06t27586Z Brassica rapa HOM05D001299 ORTHO05D009516 3.8e-36 155.6 217 42.4
ATR1098G024 Amborella trichopoda HOM05D001299 ORTHO05D009516 5.0e-36 155.2 210 43.8
Os03g0781400 Oryza sativa ssp. japonica HOM05D001299 ORTHO05D009516 5.0e-36 155.2 211 44.1
SGA_v2.0_scaffold298G47639 Striga asiatica HOM05D001299 ORTHO05D009516 6.6e-36 154.8 121 62.8
BcaC06g31610 Brassica carinata HOM05D001299 ORTHO05D009516 1.1e-35 154.1 209 42.1
AL8G15300 Arabidopsis lyrata HOM05D001299 ORTHO05D009516 1.9e-35 153.3 209 42.6
AT5G44520 Arabidopsis thaliana HOM05D001299 ORTHO05D009516 5.5e-35 151.8 209 42.1
Thhalv10000979m.g Eutrema salsugineum HOM05D001299 ORTHO05D009516 5.5e-35 151.8 209 43.1
Sp2g09310 Schrenkiella parvula HOM05D001299 ORTHO05D009516 6.1e-34 148.3 209 41.6
Cpa.g.sc285.1 Carica papaya HOM05D001299 ORTHO05D009516 1.8e-33 146.7 216 43.5
CsaV3_1G037750 Cucumis sativus L. HOM05D001299 ORTHO05D009516 2.3e-33 146.4 190 45.8
Carub.0008s0398 Capsella rubella HOM05D001299 ORTHO05D009516 3.0e-33 146.0 209 41.6
MBI18_g14310_MAGBIO Magnolia biondii HOM05D001299 ORTHO05D009516 4.4e-32 142.1 195 43.6
Peaxi162Scf00195g00521 Petunia axillaris HOM05D001299 ORTHO05D009516 4.9e-31 138.7 154 49.4
Pp3c16_13350 Physcomitrium patens HOM05D001299 ORTHO05D009516 1.8e-25 120.2 120 47.5
Glyma.09G030500 Glycine max HOM05D001299 ORTHO05D009516 2.4e-22 109.8 88 60.2
Gohir.A06G118100 Gossypium hirsutum HOM05D001299 ORTHO05D009516 3.7e-15 85.9 143 39.9
CDE03G0248 Ceratophyllum demersum HOM05D001299 ORTHO05D009516 3.3e-11 72.8 136 36.8
QL05p065109 Quercus lobata HOM05D001299 ORTHO05D009516 2.1e-10 70.1 134 36.6
PRCOL_00006791 Prasinoderma coloniale HOM05D001299 ORTHO05D009516 2.8e-10 69.7 128 33.6
Lsat_1_v5_gn_3_11400 Lactuca sativa HOM05D003461 ORTHO05D004386 1.8e-09 67.0 53 56.6
Pp3c5_830 Physcomitrium patens HOM05D001299 ORTHO05D009516 2.0e-08 63.5 60 58.3
Cre07.g314600 Chlamydomonas reinhardtii HOM05D001299 ORTHO05D009516 2.9e-07 59.7 119 31.9
MCO05G574 Micromonas commoda HOM05D001299 ORTHO05D009516 2.4e-06 56.6 146 26.0


User provided reference genes

Program Settings