Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034620 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D007024 0.0e+00 2541.9 1269 100.0
CSS0040995 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D007024 0.0e+00 2528.4 1269 99.5
Hma1.2p1_0587F.1_g184190 Hydrangea macrophylla HOM05D001937 ORTHO05D007024 0.0e+00 2284.6 1269 89.0
Rhsim09G0056700 Rhododendron simsii HOM05D001937 ORTHO05D007024 0.0e+00 2280.0 1263 89.2
Haze_10549 Corylus avellana HOM05D001937 ORTHO05D007024 0.0e+00 2278.8 1270 88.8
Lj1P823T23 Lonicera japonica HOM05D001937 ORTHO05D007024 0.0e+00 2277.3 1270 89.3
Cfa005699 Carpinus fangiana HOM05D001937 ORTHO05D007024 0.0e+00 2270.4 1270 88.7
Manes.11G123000 Manihot esculenta HOM05D001937 ORTHO05D007024 0.0e+00 2269.6 1268 87.9
CiPaw.10G131100 Carya illinoinensis HOM05D001937 ORTHO05D007024 0.0e+00 2264.6 1269 88.7
Atru.chr12.1853 Acer truncatum HOM05D001937 ORTHO05D007024 0.0e+00 2264.2 1267 88.1
QL11p024047 Quercus lobata HOM05D001937 ORTHO05D007024 0.0e+00 2259.2 1267 88.2
COL.COLO4_33143 Corchorus olitorius HOM05D001937 ORTHO05D007024 0.0e+00 2258.0 1267 87.8
Gorai.005G213100 Gossypium raimondii HOM05D001937 ORTHO05D007024 0.0e+00 2257.6 1268 87.7
Gohir.D02G190400 Gossypium hirsutum HOM05D001937 ORTHO05D007024 0.0e+00 2257.3 1268 87.5
Gohir.A03G167300 Gossypium hirsutum HOM05D001937 ORTHO05D007024 0.0e+00 2256.5 1268 87.8
Sabra04G0061200 Salix brachista HOM05D001937 ORTHO05D007024 0.0e+00 2254.9 1261 87.8
Actinidia06125 Actinidia chinensis HOM05D001937 ORTHO05D007024 0.0e+00 2254.6 1239 90.2
TWI12G0886 Tripterygium wilfordii HOM05D001937 ORTHO05D007024 0.0e+00 2251.9 1267 86.9
Prupe.2G098100 Prunus persica HOM05D001937 ORTHO05D007024 0.0e+00 2245.7 1267 87.4
Potri.004G091000 Populus trichocarpa HOM05D001937 ORTHO05D007024 0.0e+00 2245.3 1261 87.6
Nitab4.5_0000761g0030 Nicotiana tabacum HOM05D001937 ORTHO05D007024 0.0e+00 2244.5 1268 86.7
Duzib248G1173 Durio zibethinus HOM05D001937 ORTHO05D007024 0.0e+00 2244.2 1267 87.0
Ciclev10018533m.g Citrus clementina HOM05D001937 ORTHO05D007024 0.0e+00 2242.2 1269 87.5
Dinv02213 Davidia involucrata HOM05D001937 ORTHO05D007024 0.0e+00 2239.2 1208 92.0
Thecc.02G153900 Theobroma cacao HOM05D001937 ORTHO05D007024 0.0e+00 2238.4 1267 86.9
Duzib132G1189 Durio zibethinus HOM05D001937 ORTHO05D007024 0.0e+00 2236.5 1267 86.7
MD07G1077100 Malus domestica HOM05D001937 ORTHO05D007024 0.0e+00 2228.8 1267 86.7
THA.LOC104823845 Tarenaya hassleriana HOM05D001937 ORTHO05D007024 0.0e+00 2224.9 1267 86.0
Solyc09g010560.3 Solanum lycopersicum HOM05D001937 ORTHO05D007024 0.0e+00 2224.1 1269 85.4
Sopen09g005280 Solanum pennellii HOM05D001937 ORTHO05D007024 0.0e+00 2223.4 1269 85.5
PGSC0003DMG400008847 Solanum tuberosum HOM05D001937 ORTHO05D007024 0.0e+00 2221.8 1269 85.5
CAN.G97.40 Capsicum annuum HOM05D001937 ORTHO05D007024 0.0e+00 2218.0 1272 85.2
Cpa.g.sc41.77 Carica papaya HOM05D001937 ORTHO05D007024 0.0e+00 2215.7 1269 86.3
Eucgr.I01066 Eucalyptus grandis HOM05D001937 ORTHO05D007024 0.0e+00 2211.8 1266 85.6
Aa31LG9G17330 Aethionema arabicum HOM05D001937 ORTHO05D007024 0.0e+00 2210.3 1267 85.5
Cc09_g08410 Coffea canephora HOM05D001937 ORTHO05D007024 0.0e+00 2210.3 1269 86.1
FvH4_7g07120 Fragaria vesca HOM05D001937 ORTHO05D007024 0.0e+00 2209.5 1267 86.4
RcHm_v2.0_Chr1g0337071 Rosa chinensis HOM05D001937 ORTHO05D007024 0.0e+00 2206.8 1267 86.3
FAN06G4695 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2204.1 1267 86.3
Migut.N00430 Erythranthe guttata HOM05D001937 ORTHO05D007024 0.0e+00 2203.7 1268 84.9
EL10Ac7g17851 Beta vulgaris HOM05D001937 ORTHO05D007024 0.0e+00 2202.6 1267 85.3
Sp7g04200 Schrenkiella parvula HOM05D001937 ORTHO05D007024 0.0e+00 2200.6 1267 85.1
AUR62008924 Chenopodium quinoa HOM05D001937 ORTHO05D007024 0.0e+00 2199.9 1267 85.1
FAN03G1993 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2198.7 1267 85.9
Carub.0007s3301 Capsella rubella HOM05D001937 ORTHO05D007024 0.0e+00 2198.3 1267 85.1
FAN10G2279 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2198.3 1262 86.5
Lj4g0006057 Lotus japonicus HOM05D001937 ORTHO05D007024 0.0e+00 2198.3 1268 85.0
Sc14g0006180 Simmondsia chinensis HOM05D001937 ORTHO05D007024 0.0e+00 2198.3 1267 85.2
DCAR_003140 Daucus carota HOM05D001937 ORTHO05D007024 0.0e+00 2197.9 1269 85.5
BraA07t29656Z Brassica rapa HOM05D001937 ORTHO05D007024 0.0e+00 2195.6 1267 84.8
AUR62001097 Chenopodium quinoa HOM05D001937 ORTHO05D007024 0.0e+00 2195.6 1267 84.9
Thhalv10027622m.g Eutrema salsugineum HOM05D001937 ORTHO05D007024 0.0e+00 2195.2 1267 85.0
A07p19500 Brassica napus HOM05D001937 ORTHO05D007024 0.0e+00 2194.5 1267 84.8
CARHR214920 Cardamine hirsuta HOM05D001937 ORTHO05D007024 0.0e+00 2192.5 1267 84.8
Ah.08g214380 Amaranthus hybridus HOM05D001937 ORTHO05D007024 0.0e+00 2192.2 1268 84.2
Aqoxy4G02972 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 2191.0 1268 85.2
AL7G46730 Arabidopsis lyrata HOM05D001937 ORTHO05D007024 0.0e+00 2190.2 1267 84.8
BolC6t36984H Brassica oleracea HOM05D001937 ORTHO05D007024 0.0e+00 2188.3 1267 84.5
PSO017G7212 Papaver somniferum HOM05D001937 ORTHO05D007024 0.0e+00 2187.1 1268 85.1
SalBow1G8218 Salvia bowleyana HOM05D001937 ORTHO05D007024 0.0e+00 2186.4 1267 84.8
C06p17940 Brassica napus HOM05D001937 ORTHO05D007024 0.0e+00 2185.2 1267 84.4
Ca_18373_v3 Cicer arietinum L. HOM05D001937 ORTHO05D007024 0.0e+00 2185.2 1269 84.2
Medtr4g093870 Medicago truncatula HOM05D001937 ORTHO05D007024 0.0e+00 2184.1 1268 84.6
Aqoxy2G01413 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 2183.3 1268 84.9
AT5G37830 Arabidopsis thaliana HOM05D001937 ORTHO05D007024 0.0e+00 2182.5 1267 84.7
Phvul.002G211700 Phaseolus vulgaris HOM05D001937 ORTHO05D007024 0.0e+00 2179.8 1267 84.5
Glyma.08G069400 Glycine max HOM05D001937 ORTHO05D007024 0.0e+00 2177.9 1268 84.5
PSO478G1455 Papaver somniferum HOM05D001937 ORTHO05D007024 0.0e+00 2177.5 1268 84.9
CANSAT01G0692 Cannabis sativa HOM05D001937 ORTHO05D007024 0.0e+00 2175.2 1268 85.2
Nn2g12806 Nelumbo nucifera HOM05D001937 ORTHO05D007024 0.0e+00 2175.2 1249 85.3
MSTRG.3701 Avicennia marina HOM05D001937 ORTHO05D007024 0.0e+00 2174.1 1267 84.1
MBI05_g10862_MAGBIO Magnolia biondii HOM05D001937 ORTHO05D007024 0.0e+00 2174.1 1273 84.7
BcaB02g08024 Brassica carinata HOM05D001937 ORTHO05D007024 0.0e+00 2164.8 1267 84.0
FAN01G0178 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2164.0 1267 85.0
VMungo0251G0821 Vigna mungo HOM05D001937 ORTHO05D007024 0.0e+00 2162.5 1268 83.8
CsaV3_6G000030 Cucumis sativus L. HOM05D001937 ORTHO05D007024 0.0e+00 2161.3 1266 84.2
MELO3C021250.2 Cucumis melo HOM05D001937 ORTHO05D007024 0.0e+00 2159.8 1266 84.0
HanXRQChr10g0312981 Helianthus annuus HOM05D001937 ORTHO05D007024 0.0e+00 2155.2 1270 84.3
arahy.Tifrunner.gnm1.ann1.EYG9NG Arachis hypogaea HOM05D001937 ORTHO05D007024 0.0e+00 2145.5 1269 83.5
ClCG05G003000 Citrullus lanatus HOM05D001937 ORTHO05D007024 0.0e+00 2141.7 1249 84.5
Lsat_1_v5_gn_6_11080 Lactuca sativa HOM05D001937 ORTHO05D007024 0.0e+00 2141.7 1269 83.5
Sed0024188 Sechium edule HOM05D001937 ORTHO05D007024 0.0e+00 2130.5 1266 82.7
TPR.G2837 Trifolium pratense HOM05D001937 ORTHO05D007024 0.0e+00 2125.9 1268 83.2
unitig_0.g658 Utricularia gibba HOM05D001937 ORTHO05D007024 0.0e+00 2124.0 1270 82.0
ECA233G4596 Erigeron canadensis HOM05D001937 ORTHO05D007024 0.0e+00 2123.2 1264 83.3
PGR142G3997 Punica granatum HOM05D001937 ORTHO05D007024 0.0e+00 2120.1 1274 82.9
Lalb_Chr05g0217681 Lupinus albus HOM05D001937 ORTHO05D007024 0.0e+00 2107.0 1268 81.9
Peaxi162Scf00165g01826 Petunia axillaris HOM05D001937 ORTHO05D007024 0.0e+00 2086.2 1269 81.5
ATR0559G108 Amborella trichopoda HOM05D001937 ORTHO05D007024 0.0e+00 2080.1 1267 82.4
Zm00001eb021240 Zea mays HOM05D001937 ORTHO05D007024 0.0e+00 2075.1 1267 80.5
arahy.Tifrunner.gnm1.ann1.TT5FZ7 Arachis hypogaea HOM05D001937 ORTHO05D007024 0.0e+00 2070.0 1270 79.5
Os01g0966000 Oryza sativa ssp. japonica HOM05D001937 ORTHO05D007024 0.0e+00 2064.7 1264 81.1
ATR0559G369 Amborella trichopoda HOM05D001937 ORTHO05D007024 0.0e+00 2035.8 1266 80.6
Aqoxy2G01407 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 1993.8 1161 85.1
SHI12658 Sapria himalayana HOM05D001937 ORTHO05D007024 0.0e+00 1966.8 1270 75.7
SEGI_01532 Sequoiadendron giganteum HOM05D001937 ORTHO05D007024 0.0e+00 1962.2 1268 77.1
CDE04G1916 Ceratophyllum demersum HOM05D001937 ORTHO05D007024 0.0e+00 1917.1 1271 75.5
Mapoly0035s0055 Marchantia polymorpha HOM05D001937 ORTHO05D007024 0.0e+00 1873.6 1278 72.1
Actinidia11252 Actinidia chinensis HOM05D001937 ORTHO05D007024 0.0e+00 1865.1 1270 75.5
BcaC08g44352 Brassica carinata HOM05D001937 ORTHO05D007024 0.0e+00 1863.6 1069 84.9
CDE07G0097 Ceratophyllum demersum HOM05D001937 ORTHO05D007024 0.0e+00 1861.3 1191 78.2
AagrBONN_evm.TU.Sc2ySwM_368.2008 Anthoceros agrestis HOM05D001937 ORTHO05D007024 0.0e+00 1853.6 1249 73.7
Psat7g100640 Pisum sativum HOM05D001937 ORTHO05D007024 0.0e+00 1845.5 1089 83.7
Nitab4.5_0004091g0060 Nicotiana tabacum HOM05D001937 ORTHO05D007024 0.0e+00 1837.0 1268 73.8
SMO147G0274 Selaginella moellendorffii HOM05D001937 ORTHO05D007024 0.0e+00 1836.6 1271 71.5
SGA_v2.0_scaffold14G07136 Striga asiatica HOM05D001937 ORTHO05D007024 0.0e+00 1796.9 1130 79.5
Lalb_Chr16g0382831 Lupinus albus HOM05D001937 ORTHO05D007024 0.0e+00 1664.8 963 83.7
MCO14G182 Micromonas commoda HOM05D001937 ORTHO05D007024 0.0e+00 1551.6 1322 61.6
Pp3c19_22940 Physcomitrium patens HOM05D001937 ORTHO05D007024 0.0e+00 1546.2 1048 73.1
Oeu029564.1 Olea europaea HOM05D001937 ORTHO05D007024 0.0e+00 1421.8 813 85.4
GSVIVG01034203001 Vitis vinifera HOM05D001937 ORTHO05D007024 0.0e+00 1408.7 1268 61.6
Cfa025426 Carpinus fangiana HOM05D001937 ORTHO05D007024 0.0e+00 1335.1 1338 54.0
Cre07.g325748 Chlamydomonas reinhardtii HOM05D001937 ORTHO05D007024 0.0e+00 1297.0 1390 52.3
TAR636G0878 Trochodendron aralioides HOM05D001937 ORTHO05D007024 0.0e+00 1289.6 725 86.5
VMungo0251G0025 Vigna mungo HOM05D001937 ORTHO05D007024 0.0e+00 1199.9 1018 64.0
Dinv02208 Davidia involucrata HOM05D001937 ORTHO05D007024 0.0e+00 1193.7 811 76.7
Dinv10935 Davidia involucrata HOM05D001937 ORTHO05D007024 6.4e-273 944.9 572 82.7
TAR636G1691 Trochodendron aralioides HOM05D001937 ORTHO05D007024 1.4e-267 927.2 502 91.6
PRCOL_00004137 Prasinoderma coloniale HOM05D001937 ORTHO05D007024 7.4e-261 904.8 1252 41.8
CBR_g26054 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-226 790.8 654 61.6
MD02G1239500 Malus domestica HOM05D001937 ORTHO05D007024 1.0e-214 751.5 528 72.7
TAR636G2433 Trochodendron aralioides HOM05D001937 ORTHO05D007024 1.2e-205 721.5 455 80.2
TAR636G1243 Trochodendron aralioides HOM05D001937 ORTHO05D007024 3.5e-194 683.3 389 88.7
CBR_g26059 Chara braunii HOM05D001937 ORTHO05D007024 2.3e-129 468.0 359 66.9
Potri.017G124400 Populus trichocarpa HOM05D001937 ORTHO05D007024 8.8e-121 439.5 312 73.1
Lalb_Chr16g0382841 Lupinus albus HOM05D001937 ORTHO05D007024 3.7e-111 407.5 270 77.8
Oeu061583.3 Olea europaea HOM05D001937 ORTHO05D007024 3.6e-82 311.2 480 43.3
SalBow2G0807 Salvia bowleyana HOM05D001937 ORTHO05D007024 4.3e-75 287.7 170 81.8
SalBow1G2752 Salvia bowleyana HOM05D001937 ORTHO05D007024 3.1e-73 281.6 170 80.6
SalBow1G1280 Salvia bowleyana HOM05D001937 ORTHO05D007024 1.2e-72 279.6 170 80.0
HPP92_019823 Vanilla planifolia HOM05D001937 ORTHO05D007024 1.5e-64 252.7 138 92.0
ECA234G0635 Erigeron canadensis HOM05D001937 ORTHO05D007024 7.8e-61 240.4 234 56.4
TAR636G3286 Trochodendron aralioides HOM05D001937 ORTHO05D043971 4.7e-50 204.5 116 81.9
HPP92_019822 Vanilla planifolia HOM05D001937 ORTHO05D007024 1.4e-41 176.4 152 65.8
TAR636G2347 Trochodendron aralioides HOM05D001937 ORTHO05D007024 2.6e-40 172.2 91 91.2
ECA234G4540 Erigeron canadensis HOM05D016619 ORTHO05D007024 4.9e-39 167.9 182 54.9
CBR_g39219 Chara braunii HOM05D001937 ORTHO05D043971 5.8e-32 144.4 98 69.4
HPP92_019824 Vanilla planifolia HOM05D001937 ORTHO05D007024 9.6e-27 127.1 104 62.5


User provided reference genes

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