Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034614 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 5.3e-66 254.2 129 100.0
Nn6g32300 Nelumbo nucifera HOM05D005344 ORTHO05D006444 4.6e-62 241.1 129 93.8
TAR381G0484 Trochodendron aralioides HOM05D005344 ORTHO05D006444 1.1e-60 236.5 129 91.5
Duzib093G0333 Durio zibethinus HOM05D005344 ORTHO05D006444 7.4e-60 233.8 129 91.5
Gohir.D05G218100 Gossypium hirsutum HOM05D005344 ORTHO05D006444 2.2e-59 232.3 129 89.9
Gohir.A05G214800 Gossypium hirsutum HOM05D005344 ORTHO05D006444 3.7e-59 231.5 129 89.9
GSVIVG01009861001 Vitis vinifera HOM05D005344 ORTHO05D006444 6.3e-59 230.7 129 89.9
Dinv39499 Davidia involucrata HOM05D005344 ORTHO05D006444 8.2e-59 230.3 129 90.7
Potri.004G228566 Populus trichocarpa HOM05D005344 ORTHO05D006444 8.2e-59 230.3 129 89.9
CiPaw.08G064300 Carya illinoinensis HOM05D005344 ORTHO05D006444 1.1e-58 229.9 129 89.1
Manes.18G015800 Manihot esculenta HOM05D005344 ORTHO05D006444 1.1e-58 229.9 129 89.1
PGR083G0019 Punica granatum HOM05D005344 ORTHO05D006444 1.1e-58 229.9 129 89.1
ECA236G2959 Erigeron canadensis HOM05D005344 ORTHO05D006444 2.4e-58 228.8 129 88.4
Thecc.08G040900 Theobroma cacao HOM05D005344 ORTHO05D006444 2.4e-58 228.8 129 89.1
HanXRQChr15g0480961 Helianthus annuus HOM05D005344 ORTHO05D006444 3.1e-58 228.4 129 89.9
Lsat_1_v5_gn_7_29421 Lactuca sativa HOM05D005344 ORTHO05D006444 3.1e-58 228.4 129 89.1
QL02p011006 Quercus lobata HOM05D005344 ORTHO05D006444 3.1e-58 228.4 128 88.3
CSS0046670 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 9.1e-58 226.9 121 91.7
Rhsim07G0245900 Rhododendron simsii HOM05D005344 ORTHO05D006444 1.5e-57 226.1 119 91.6
Actinidia15404 Actinidia chinensis HOM05D005344 ORTHO05D006444 2.6e-57 225.3 123 88.6
Cfa013923 Carpinus fangiana HOM05D005344 ORTHO05D006444 2.6e-57 225.3 128 88.3
QL03p018250 Quercus lobata HOM05D005344 ORTHO05D006444 2.6e-57 225.3 128 86.7
Cpa.g.sc116.53 Carica papaya HOM05D005344 ORTHO05D006444 3.4e-57 224.9 127 87.4
CSS0046173 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 4.5e-57 224.6 119 92.4
HanXRQChr04g0119171 Helianthus annuus HOM05D005344 ORTHO05D006444 4.5e-57 224.6 129 87.6
PGR102G3231 Punica granatum HOM05D005344 ORTHO05D006444 4.5e-57 224.6 127 87.4
CANSAT56G2098 Cannabis sativa HOM05D005344 ORTHO05D006444 1.3e-56 223.0 129 86.0
CANSAT56G2754 Cannabis sativa HOM05D005344 ORTHO05D006444 1.7e-56 222.6 129 86.8
Cc10_g01930 Coffea canephora HOM05D005344 ORTHO05D006444 2.2e-56 222.2 129 86.8
Atru.chr12.1135 Acer truncatum HOM05D005344 ORTHO05D006444 2.9e-56 221.9 127 86.6
TWI31G0971 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 2.9e-56 221.9 129 85.3
TWI75G1031 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 2.9e-56 221.9 129 86.0
Sed0018322 Sechium edule HOM05D005344 ORTHO05D006444 3.8e-56 221.5 127 85.8
Eucgr.F01631 Eucalyptus grandis HOM05D005344 ORTHO05D006444 8.5e-56 220.3 124 86.3
FAN15G2308 Fragaria x ananassa HOM05D005344 ORTHO05D006444 1.4e-55 219.5 129 84.5
vmacro04337 Vaccinium macrocarpon HOM05D005344 ORTHO05D006444 1.9e-55 219.2 119 89.9
PSO541G4852 Papaver somniferum HOM05D005344 ORTHO05D006444 2.5e-55 218.8 129 86.0
PSO675G5369 Papaver somniferum HOM05D005344 ORTHO05D006444 2.5e-55 218.8 129 86.0
Prupe.1G182400 Prunus persica HOM05D005344 ORTHO05D006444 2.5e-55 218.8 129 84.5
TAR625G0974 Trochodendron aralioides HOM05D005344 ORTHO05D006444 3.2e-55 218.4 129 82.9
Prupe.1G368800 Prunus persica HOM05D005344 ORTHO05D006444 4.2e-55 218.0 129 84.5
MD02G1241500 Malus domestica HOM05D005344 ORTHO05D006444 5.5e-55 217.6 129 83.7
RcHm_v2.0_Chr6g0302491 Rosa chinensis HOM05D005344 ORTHO05D006444 5.5e-55 217.6 129 83.7
arahy.Tifrunner.gnm1.ann1.Y8FRL8 Arachis hypogaea HOM05D005344 ORTHO05D006444 7.2e-55 217.2 129 82.2
BcaB06g27347 Brassica carinata HOM05D005344 ORTHO05D006444 9.4e-55 216.9 129 82.2
BolC4t26183H Brassica oleracea HOM05D005344 ORTHO05D006444 9.4e-55 216.9 129 82.2
BraA04t16898Z Brassica rapa HOM05D005344 ORTHO05D006444 9.4e-55 216.9 129 82.2
CsaV3_3G045650 Cucumis sativus L. HOM05D005344 ORTHO05D006444 9.4e-55 216.9 127 84.3
Gorai.009G225000 Gossypium raimondii HOM05D005344 ORTHO05D006444 1.2e-54 216.5 119 89.1
CDE05G1229 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 2.1e-54 215.7 129 82.2
Aa31LG9G16480 Aethionema arabicum HOM05D005344 ORTHO05D006444 2.7e-54 215.3 127 81.9
FvH4_2g38800 Fragaria vesca HOM05D005344 ORTHO05D006444 2.7e-54 215.3 129 82.9
MD07G1075400 Malus domestica HOM05D005344 ORTHO05D006444 2.7e-54 215.3 129 82.9
AT5G39600 Arabidopsis thaliana HOM05D005344 ORTHO05D006444 3.6e-54 214.9 127 82.7
Sabra01G0173600 Salix brachista HOM05D005344 ORTHO05D006444 3.6e-54 214.9 120 87.5
DCAR_013854 Daucus carota HOM05D005344 ORTHO05D006444 4.7e-54 214.5 119 87.4
Sp7g02390 Schrenkiella parvula HOM05D005344 ORTHO05D006444 6.1e-54 214.2 127 81.1
Thhalv10027992m.g Eutrema salsugineum HOM05D005344 ORTHO05D006444 7.9e-54 213.8 127 81.9
Sc02g0008440 Simmondsia chinensis HOM05D005344 ORTHO05D006444 7.9e-54 213.8 129 80.6
Potri.012G106900 Populus trichocarpa HOM05D005344 ORTHO05D006444 1.0e-53 213.4 119 88.2
Carub.0007s3634 Capsella rubella HOM05D005344 ORTHO05D006444 1.4e-53 213.0 127 81.1
Haze_22604 Corylus avellana HOM05D005344 ORTHO05D006444 1.4e-53 213.0 119 88.2
Medtr3g113260 Medicago truncatula HOM05D005344 ORTHO05D006444 1.4e-53 213.0 129 81.4
Peaxi162Scf00287g01714 Petunia axillaris HOM05D005344 ORTHO05D006444 1.8e-53 212.6 129 82.2
Solyc04g081220.3 Solanum lycopersicum HOM05D005344 ORTHO05D006444 1.8e-53 212.6 129 81.4
Sopen04g034830 Solanum pennellii HOM05D005344 ORTHO05D006444 1.8e-53 212.6 129 81.4
Nitab4.5_0001988g0010 Nicotiana tabacum HOM05D005344 ORTHO05D006444 2.3e-53 212.2 129 81.4
TPR.G38895 Trifolium pratense HOM05D005344 ORTHO05D006444 2.3e-53 212.2 129 80.6
Psat5g014400 Pisum sativum HOM05D005344 ORTHO05D006444 3.0e-53 211.8 129 81.4
CARHR262690 Cardamine hirsuta HOM05D005344 ORTHO05D006444 5.2e-53 211.1 127 81.9
PGSC0003DMG400003723 Solanum tuberosum HOM05D005344 ORTHO05D006444 5.2e-53 211.1 129 80.6
Medtr1g013440 Medicago truncatula HOM05D005344 ORTHO05D006444 8.8e-53 210.3 129 80.6
Nitab4.5_0006992g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 8.8e-53 210.3 129 80.6
AL7G50710 Arabidopsis lyrata HOM05D005344 ORTHO05D006444 2.0e-52 209.1 127 80.3
COL.COLO4_32025 Corchorus olitorius HOM05D005344 ORTHO05D006444 2.0e-52 209.1 119 86.6
Lalb_Chr11g0061991 Lupinus albus HOM05D005344 ORTHO05D006444 2.0e-52 209.1 129 81.4
Migut.N03145 Erythranthe guttata HOM05D005344 ORTHO05D006444 3.3e-52 208.4 129 79.1
SGA_v2.0_scaffold47G17494 Striga asiatica HOM05D005344 ORTHO05D006444 4.4e-52 208.0 129 79.8
TPR.G5807 Trifolium pratense HOM05D005344 ORTHO05D006444 4.4e-52 208.0 130 81.5
Lj1g0020845 Lotus japonicus HOM05D005344 ORTHO05D006444 7.4e-52 207.2 129 79.8
ClCG05G018520 Citrullus lanatus HOM05D005344 ORTHO05D006444 1.3e-51 206.5 119 84.9
CDE05G1331 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 2.2e-51 205.7 119 83.2
MSTRG.24255 Avicennia marina HOM05D005344 ORTHO05D006444 2.8e-51 205.3 129 80.6
Aqoxy6G02319 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 6.3e-51 204.1 129 79.8
Oeu024518.1 Olea europaea HOM05D005344 ORTHO05D006444 1.1e-50 203.4 119 83.2
A04p12340 Brassica napus HOM05D005344 ORTHO05D006444 1.4e-50 203.0 121 81.0
C04p46010 Brassica napus HOM05D005344 ORTHO05D006444 1.4e-50 203.0 121 81.0
MELO3C003771.2 Cucumis melo HOM05D005344 ORTHO05D006444 1.4e-50 203.0 119 84.0
FAN20G2570 Fragaria x ananassa HOM05D005344 ORTHO05D006444 1.4e-50 203.0 119 82.4
TAR625G1223 Trochodendron aralioides HOM05D005344 ORTHO05D006444 1.8e-50 202.6 117 83.8
Ciclev10002838m.g Citrus clementina HOM05D005344 ORTHO05D006444 2.4e-50 202.2 127 78.7
Glyma.06G025600 Glycine max HOM05D005344 ORTHO05D006444 3.1e-50 201.8 129 77.5
Oeu031192.1 Olea europaea HOM05D005344 ORTHO05D006444 3.1e-50 201.8 119 82.4
Aqoxy6G02944 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 4.1e-50 201.4 119 84.0
Phvul.009G015400 Phaseolus vulgaris HOM05D005344 ORTHO05D006444 4.1e-50 201.4 129 79.1
arahy.Tifrunner.gnm1.ann1.0YI8WX Arachis hypogaea HOM05D005344 ORTHO05D006444 1.6e-49 199.5 119 79.8
EL10Ac1g02258 Beta vulgaris HOM05D005344 ORTHO05D006444 3.5e-49 198.4 128 75.0
Glyma.04G025800 Glycine max HOM05D005344 ORTHO05D006444 7.7e-49 197.2 129 76.7
SalBow8G2912 Salvia bowleyana HOM05D005344 ORTHO05D006444 7.7e-49 197.2 119 81.5
arahy.Tifrunner.gnm1.ann1.2J2T1L Arachis hypogaea HOM05D005344 ORTHO05D006444 1.0e-48 196.8 122 77.9
CAN.G1271.12 Capsicum annuum HOM05D005344 ORTHO05D006444 1.3e-48 196.4 119 80.7
Nitab4.5_0005425g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 2.9e-48 195.3 119 79.0
AUR62035723 Chenopodium quinoa HOM05D005344 ORTHO05D006444 6.5e-48 194.1 146 68.5
Ca_16814_v3 Cicer arietinum L. HOM05D005344 ORTHO05D006444 8.5e-48 193.7 119 79.8
HPP92_014936 Vanilla planifolia HOM05D005344 ORTHO05D006444 1.9e-47 192.6 128 77.3
arahy.Tifrunner.gnm1.ann1.NGB00B Arachis hypogaea HOM05D005344 ORTHO05D006444 3.2e-47 191.8 119 78.2
FvH4_1g25620 Fragaria vesca HOM05D005344 ORTHO05D006444 4.2e-47 191.4 127 75.6
AUR62035436 Chenopodium quinoa HOM05D005344 ORTHO05D006444 9.4e-47 190.3 119 76.5
unitig_899.g15276 Utricularia gibba HOM05D005344 ORTHO05D006444 9.4e-47 190.3 148 68.9
MBI05_g26505_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 2.7e-46 188.7 107 87.9
VMungo1309G2030 Vigna mungo HOM05D005344 ORTHO05D006444 2.3e-45 185.7 122 76.2
SHI08085 Sapria himalayana HOM05D005344 ORTHO05D006444 3.0e-45 185.3 119 75.6
Manes.09G054100 Manihot esculenta HOM05D005344 ORTHO05D006444 3.3e-44 181.8 119 73.9
FAN26G0652 Fragaria x ananassa HOM05D005344 ORTHO05D006444 5.7e-44 181.0 122 73.0
FAN23G0736 Fragaria x ananassa HOM05D005344 ORTHO05D006444 2.8e-43 178.7 130 71.5
arahy.Tifrunner.gnm1.ann1.3U1GZ3 Arachis hypogaea HOM05D005344 ORTHO05D006444 1.8e-42 176.0 107 80.4
FAN19G0275 Fragaria x ananassa HOM05D005344 ORTHO05D006444 2.4e-42 175.6 121 72.7
arahy.Tifrunner.gnm1.ann1.IGJ8TG Arachis hypogaea HOM05D005344 ORTHO05D006444 1.2e-41 173.3 105 81.0
ATR0665G498 Amborella trichopoda HOM05D005344 ORTHO05D006444 2.7e-41 172.2 129 70.5
Atru.chr4.1572 Acer truncatum HOM05D005344 ORTHO05D006444 2.9e-40 168.7 133 69.2
arahy.Tifrunner.gnm1.ann1.Y1NSFR Arachis hypogaea HOM05D005344 ORTHO05D006444 5.2e-37 157.9 96 81.2
arahy.Tifrunner.gnm1.ann1.2QY3VR Arachis hypogaea HOM05D005344 ORTHO05D006444 2.0e-36 156.0 97 79.4
arahy.Tifrunner.gnm1.ann1.ZTTZ43 Arachis hypogaea HOM05D005344 ORTHO05D006444 2.6e-36 155.6 96 80.2
arahy.Tifrunner.gnm1.ann1.H9RICG Arachis hypogaea HOM05D005344 ORTHO05D006444 3.4e-36 155.2 95 80.0
Pp3c9_11020 Physcomitrium patens HOM05D005344 ORTHO05D006444 5.7e-36 154.5 129 60.5
Gorai.005G111500 Gossypium raimondii HOM05D005344 ORTHO05D006444 2.8e-35 152.1 100 77.0
MSTRG.22330 Avicennia marina HOM05D005344 ORTHO05D006444 1.4e-34 149.8 97 75.3
Mapoly0151s0020 Marchantia polymorpha HOM05D005344 ORTHO05D006444 2.0e-33 146.0 114 58.8
Os02g0282100 Oryza sativa ssp. japonica HOM05D005344 ORTHO05D006444 1.0e-32 143.7 143 53.8
MBI07_g11722_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 3.8e-32 141.7 87 81.6
Zm00001eb237200 Zea mays HOM05D005344 ORTHO05D006444 8.0e-30 134.0 141 50.4
Hund00462 Selenicereus undatus HOM05D005344 ORTHO05D006444 2.3e-29 132.5 113 58.4
ATR0605G109 Amborella trichopoda HOM05D005344 ORTHO05D006444 5.2e-29 131.3 92 75.0
AagrBONN_evm.TU.Sc2ySwM_117.1156 Anthoceros agrestis HOM05D005344 ORTHO05D006444 2.6e-28 129.0 99 57.6
arahy.Tifrunner.gnm1.ann1.3DP3ZG Arachis hypogaea HOM05D005344 ORTHO05D006444 6.2e-14 81.3 51 76.5
CSS0040415 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 7.5e-12 74.3 39 84.6
CSS0035037 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 1.6e-09 66.6 39 82.1
CBR_g48744 Chara braunii HOM05D005344 ORTHO05D006444 1.6e-06 56.6 66 39.4
Sed0016125 Sechium edule HOM05D005344 ORTHO05D006444 4.7e-06 55.1 31 77.4


User provided reference genes

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