Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034598 Camellia sinensis var. sinensis HOM05D006394 ORTHO05D008057 4.3e-42 174.1 80 100.0
ATR0421G001 Amborella trichopoda HOM05D006394 ORTHO05D008057 7.4e-26 120.2 54 92.6
unitig_8.g2966 Utricularia gibba HOM05D006394 ORTHO05D008057 2.9e-22 108.2 55 78.2
Eucgr.J02427 Eucalyptus grandis HOM05D006394 ORTHO05D008057 1.4e-21 105.9 48 93.8
Nn6g32361 Nelumbo nucifera HOM05D006394 ORTHO05D008057 1.9e-21 105.5 48 93.8
SGA_v2.0_scaffold137G35082 Striga asiatica HOM05D006394 ORTHO05D008057 1.9e-21 105.5 49 91.8
GSVIVG01018789001 Vitis vinifera HOM05D006394 ORTHO05D008057 1.9e-21 105.5 48 93.8
Actinidia22984 Actinidia chinensis HOM05D006394 ORTHO05D008057 3.2e-21 104.8 50 88.0
CiPaw.07G057900 Carya illinoinensis HOM05D006394 ORTHO05D008057 4.2e-21 104.4 48 91.7
Ciclev10025906m.g Citrus clementina HOM05D006394 ORTHO05D008057 4.2e-21 104.4 48 91.7
COL.COLO4_21919 Corchorus olitorius HOM05D006394 ORTHO05D008057 4.2e-21 104.4 48 91.7
Gohir.A11G175800 Gossypium hirsutum HOM05D006394 ORTHO05D008057 4.2e-21 104.4 48 91.7
Gohir.D10G090000 Gossypium hirsutum HOM05D006394 ORTHO05D008057 4.2e-21 104.4 48 91.7
Gohir.D11G183600 Gossypium hirsutum HOM05D006394 ORTHO05D008057 4.2e-21 104.4 48 91.7
Gorai.007G195500 Gossypium raimondii HOM05D006394 ORTHO05D008057 4.2e-21 104.4 48 91.7
TWI53G2075 Tripterygium wilfordii HOM05D006394 ORTHO05D008057 4.2e-21 104.4 48 91.7
ECA238G0838 Erigeron canadensis HOM05D006394 ORTHO05D008057 7.2e-21 103.6 49 87.8
MD15G1246300 Malus domestica HOM05D006394 ORTHO05D008057 7.2e-21 103.6 47 93.6
Medtr8g075970 Medicago truncatula HOM05D006394 ORTHO05D008057 7.2e-21 103.6 48 91.7
PSO541G5117 Papaver somniferum HOM05D006394 ORTHO05D008057 7.2e-21 103.6 50 90.0
Prupe.7G167400 Prunus persica HOM05D006394 ORTHO05D008057 7.2e-21 103.6 47 93.6
RcHm_v2.0_Chr2g0099531 Rosa chinensis HOM05D006394 ORTHO05D008057 7.2e-21 103.6 47 91.5
Haze_03772 Corylus avellana HOM05D006394 ORTHO05D008057 1.2e-20 102.8 48 89.6
PSO675G2528 Papaver somniferum HOM05D006394 ORTHO05D008057 1.2e-20 102.8 50 90.0
FvH4_1g11930 Fragaria vesca HOM05D006394 ORTHO05D008057 1.6e-20 102.4 47 91.5
FAN19G0259 Fragaria x ananassa HOM05D006394 ORTHO05D008057 1.6e-20 102.4 47 91.5
FAN23G1778 Fragaria x ananassa HOM05D006394 ORTHO05D008057 1.6e-20 102.4 47 91.5
FAN26G2471 Fragaria x ananassa HOM05D006394 ORTHO05D008057 1.6e-20 102.4 47 91.5
FAN28G2242 Fragaria x ananassa HOM05D006394 ORTHO05D008057 1.6e-20 102.4 47 91.5
Dinv33624 Davidia involucrata HOM05D006394 ORTHO05D008057 2.1e-20 102.1 49 89.8
Duzib264G0144 Durio zibethinus HOM05D006394 ORTHO05D008057 2.1e-20 102.1 48 89.6
Gohir.A10G098200 Gossypium hirsutum HOM05D006394 ORTHO05D008057 2.1e-20 102.1 48 89.6
HanXRQChr14g0441351 Helianthus annuus HOM05D006394 ORTHO05D008057 2.7e-20 101.7 49 87.8
Lj4g0024758 Lotus japonicus HOM05D006394 ORTHO05D008057 3.6e-20 101.3 48 89.6
HPP92_007113 Vanilla planifolia HOM05D006394 ORTHO05D008057 3.6e-20 101.3 47 91.5
VMungo0251G2040 Vigna mungo HOM05D006394 ORTHO05D008057 3.6e-20 101.3 48 89.6
MSTRG.2708 Avicennia marina HOM05D006394 ORTHO05D008057 4.7e-20 100.9 50 86.0
CDE04G0153 Ceratophyllum demersum HOM05D006394 ORTHO05D008057 4.7e-20 100.9 48 85.4
Gorai.011G098800 Gossypium raimondii HOM05D006394 ORTHO05D008057 4.7e-20 100.9 48 89.6
CANSAT01G2157 Cannabis sativa HOM05D006394 ORTHO05D008057 6.1e-20 100.5 48 87.5
Lalb_Chr09g0333101 Lupinus albus HOM05D006394 ORTHO05D008057 7.9e-20 100.1 48 87.5
Potri.005G115100 Populus trichocarpa HOM05D006394 ORTHO05D008057 7.9e-20 100.1 48 87.5
Aqoxy2G01815 Aquilegia oxysepala HOM05D006394 ORTHO05D008057 1.0e-19 99.8 48 89.6
THA.LOC104804261 Tarenaya hassleriana HOM05D006394 ORTHO05D008057 1.0e-19 99.8 48 87.5
Ca_22372_v3 Cicer arietinum L. HOM05D006394 ORTHO05D008057 1.4e-19 99.4 48 87.5
MELO3C007895.2 Cucumis melo HOM05D006394 ORTHO05D008057 1.4e-19 99.4 48 85.4
CsaV3_6G047020 Cucumis sativus L. HOM05D006394 ORTHO05D008057 1.4e-19 99.4 48 85.4
Psat4g099000 Pisum sativum HOM05D006394 ORTHO05D008057 1.4e-19 99.4 48 87.5
Glyma.16G129000 Glycine max HOM05D006394 ORTHO05D008057 1.8e-19 99.0 51 86.3
DCAR_032392 Daucus carota HOM05D006394 ORTHO05D008057 3.0e-19 98.2 49 83.7
arahy.Tifrunner.gnm1.ann1.SHNU8N Arachis hypogaea HOM05D006394 ORTHO05D008057 6.7e-19 97.1 48 81.2
arahy.Tifrunner.gnm1.ann1.VDMC0V Arachis hypogaea HOM05D006394 ORTHO05D008057 6.7e-19 97.1 48 81.2
Migut.H01156 Erythranthe guttata HOM05D006394 ORTHO05D008057 6.7e-19 97.1 49 85.7
PGR102G2413 Punica granatum HOM05D006394 ORTHO05D008057 6.7e-19 97.1 45 88.9
Hund16487 Selenicereus undatus HOM05D006394 ORTHO05D008057 8.8e-19 96.7 47 85.1
Thecc.01G019800 Theobroma cacao HOM05D006394 ORTHO05D008057 8.8e-19 96.7 48 89.6
CAN.G1735.1 Capsicum annuum HOM05D006394 ORTHO05D008057 1.5e-18 95.9 46 87.0
Cc07_g10630 Coffea canephora HOM05D006394 ORTHO05D008057 2.0e-18 95.5 49 83.7
EL10As8g23834 Beta vulgaris HOM05D006394 ORTHO05D008057 2.6e-18 95.1 46 84.8
unitig_22.g6143 Utricularia gibba HOM05D006394 ORTHO05D008057 4.4e-18 94.4 47 83.0
Rhsim10G0213000 Rhododendron simsii HOM05D006394 ORTHO05D008057 7.4e-18 93.6 52 80.8
Sc16g0002110 Simmondsia chinensis HOM05D006394 ORTHO05D008057 7.4e-18 93.6 55 70.9
Peaxi162Scf00034g02720 Petunia axillaris HOM05D006394 ORTHO05D008057 1.7e-17 92.4 46 84.8
Glyma.02G048900 Glycine max HOM05D006394 ORTHO05D008057 3.7e-17 91.3 43 88.4
Aa31LG8G15150 Aethionema arabicum HOM05D006394 ORTHO05D008057 4.8e-17 90.9 47 80.9
Nitab4.5_0006119g0030 Nicotiana tabacum HOM05D006394 ORTHO05D008057 4.8e-17 90.9 46 82.6
AT2G17975 Arabidopsis thaliana HOM05D006394 ORTHO05D008057 6.3e-17 90.5 48 79.2
Nitab4.5_0000438g0030 Nicotiana tabacum HOM05D006394 ORTHO05D008057 6.3e-17 90.5 46 82.6
Carub.0003s3211 Capsella rubella HOM05D006394 ORTHO05D008057 1.1e-16 89.7 48 79.2
SMO347G0374 Selaginella moellendorffii HOM05D006394 ORTHO05D008057 1.4e-16 89.4 45 82.2
Solyc03g033560.3 Solanum lycopersicum HOM05D006394 ORTHO05D008057 1.8e-16 89.0 46 80.4
Sopen03g006350 Solanum pennellii HOM05D006394 ORTHO05D008057 1.8e-16 89.0 46 80.4
BcaC06g36350 Brassica carinata HOM05D006394 ORTHO05D008057 4.1e-16 87.8 48 77.1
A07p02700 Brassica napus HOM05D006394 ORTHO05D008057 4.1e-16 87.8 48 77.1
C07p05000 Brassica napus HOM05D006394 ORTHO05D008057 4.1e-16 87.8 48 77.1
BolC7t40901H Brassica oleracea HOM05D006394 ORTHO05D008057 4.1e-16 87.8 48 77.1
BraA07t28070Z Brassica rapa HOM05D006394 ORTHO05D008057 4.1e-16 87.8 48 77.1
AL3G51010 Arabidopsis lyrata HOM05D006394 ORTHO05D008057 5.3e-16 87.4 48 77.1
BcaB03g16582 Brassica carinata HOM05D006394 ORTHO05D008057 5.3e-16 87.4 48 77.1
Thhalv10022807m.g Eutrema salsugineum HOM05D006394 ORTHO05D008057 5.3e-16 87.4 48 77.1
CARHR108450 Cardamine hirsuta HOM05D006394 ORTHO05D008057 1.6e-15 85.9 46 78.3
Sp3g31400 Schrenkiella parvula HOM05D006394 ORTHO05D008057 3.5e-15 84.7 48 75.0
CBR_g82288 Chara braunii HOM05D006394 ORTHO05D008057 1.3e-09 66.2 56 57.1
Actinidia14030 Actinidia chinensis HOM05D006394 ORTHO05D008057 4.1e-08 61.2 57 52.6
Actinidia31001 Actinidia chinensis HOM05D006394 ORTHO05D008057 1.2e-07 59.7 27 92.6


User provided reference genes

Program Settings