Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034583 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 6.9e-276 953.4 485 100.0
CSS0005978 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 2.0e-275 951.8 485 99.8
Actinidia09006 Actinidia chinensis HOM05D006741 ORTHO05D008434 1.9e-185 652.9 488 71.5
Rhsim08G0227700 Rhododendron simsii HOM05D006741 ORTHO05D008434 4.4e-182 641.7 494 71.3
Actinidia39136 Actinidia chinensis HOM05D006741 ORTHO05D008434 4.3e-177 625.2 487 69.2
Dinv30435 Davidia involucrata HOM05D006741 ORTHO05D008434 6.2e-168 594.7 462 68.6
TAR636G1866 Trochodendron aralioides HOM05D006741 ORTHO05D008434 6.7e-162 574.7 505 63.0
vmacro17014 Vaccinium macrocarpon HOM05D006741 ORTHO05D008434 2.6e-142 509.6 452 63.1
CiPaw.01G231300 Carya illinoinensis HOM05D006741 ORTHO05D008434 5.5e-140 501.9 502 58.2
Cfa003646 Carpinus fangiana HOM05D006741 ORTHO05D008434 7.2e-140 501.5 502 58.0
QL05p019947 Quercus lobata HOM05D006741 ORTHO05D008434 2.0e-137 493.4 510 56.3
Thecc.06G100200 Theobroma cacao HOM05D006741 ORTHO05D008434 2.0e-137 493.4 507 56.4
Duzib235G1269 Durio zibethinus HOM05D006741 ORTHO05D008434 1.6e-131 473.8 506 55.9
Nn6g35322 Nelumbo nucifera HOM05D006741 ORTHO05D008434 3.9e-130 469.2 506 52.8
Haze_15849 Corylus avellana HOM05D006741 ORTHO05D008434 3.7e-128 462.6 431 59.9
Duzib192G0766 Durio zibethinus HOM05D006741 ORTHO05D008434 6.3e-128 461.8 504 54.0
Manes.11G033400 Manihot esculenta HOM05D006741 ORTHO05D008434 8.2e-128 461.5 522 52.9
COL.COLO4_30514 Corchorus olitorius HOM05D006741 ORTHO05D008434 1.4e-127 460.7 511 53.4
Atru.chr1.3525 Acer truncatum HOM05D006741 ORTHO05D008434 2.4e-127 459.9 498 55.4
Oeu017120.1 Olea europaea HOM05D006741 ORTHO05D008434 4.1e-127 459.1 491 52.7
TWI75G1374 Tripterygium wilfordii HOM05D006741 ORTHO05D008434 3.0e-122 443.0 513 51.9
Cpa.g.sc25.10 Carica papaya HOM05D006741 ORTHO05D008434 3.5e-118 429.5 491 51.3
Potri.013G040800 Populus trichocarpa HOM05D006741 ORTHO05D008434 6.5e-117 425.2 505 52.9
Sabra05G0046800 Salix brachista HOM05D006741 ORTHO05D008434 1.2e-110 404.4 506 50.2
Gohir.A06G189500 Gossypium hirsutum HOM05D006741 ORTHO05D008434 2.0e-110 403.7 498 51.2
DCAR_023081 Daucus carota HOM05D006741 ORTHO05D008434 3.5e-110 402.9 496 49.2
PSO210G6928 Papaver somniferum HOM05D006741 ORTHO05D008434 7.7e-110 401.7 516 49.8
GSVIVG01016979001 Vitis vinifera HOM05D006741 ORTHO05D008434 1.0e-109 401.4 489 49.7
Cc04_g02540 Coffea canephora HOM05D006741 ORTHO05D008434 5.0e-109 399.1 491 49.9
Lj9A513G60 Lonicera japonica HOM05D006741 ORTHO05D008434 1.1e-108 397.9 443 56.7
Gorai.010G230700 Gossypium raimondii HOM05D006741 ORTHO05D008434 2.5e-108 396.7 498 50.8
PSO210G4778 Papaver somniferum HOM05D006741 ORTHO05D008434 7.2e-108 395.2 514 49.6
Potri.005G053300 Populus trichocarpa HOM05D006741 ORTHO05D008434 9.5e-108 394.8 498 50.4
Gohir.D06G197900 Gossypium hirsutum HOM05D006741 ORTHO05D008434 1.6e-107 394.0 498 50.6
Sabra13G0037700 Salix brachista HOM05D006741 ORTHO05D008434 8.0e-107 391.7 477 50.3
Lalb_Chr01g0013161 Lupinus albus HOM05D006741 ORTHO05D008434 4.0e-106 389.4 501 49.3
Aqoxy7G03978 Aquilegia oxysepala HOM05D006741 ORTHO05D008434 2.6e-105 386.7 512 47.9
CANSAT56G2677 Cannabis sativa HOM05D006741 ORTHO05D008434 4.4e-105 386.0 518 46.1
Eucgr.J02937 Eucalyptus grandis HOM05D006741 ORTHO05D008434 9.8e-105 384.8 422 51.9
Sed0020930 Sechium edule HOM05D006741 ORTHO05D008434 2.8e-104 383.3 507 48.9
Prupe.3G058900 Prunus persica HOM05D006741 ORTHO05D008434 8.3e-104 381.7 520 50.2
Sc12g0010170 Simmondsia chinensis HOM05D006741 ORTHO05D008434 5.4e-103 379.0 508 47.4
arahy.Tifrunner.gnm1.ann1.X4D5DL Arachis hypogaea HOM05D006741 ORTHO05D008434 9.2e-103 378.3 448 49.6
MSTRG.11026 Avicennia marina HOM05D006741 ORTHO05D008434 1.2e-102 377.9 483 47.2
MD17G1183900 Malus domestica HOM05D006741 ORTHO05D008434 1.6e-102 377.5 514 49.6
Lj3g0008384 Lotus japonicus HOM05D006741 ORTHO05D008434 2.7e-102 376.7 479 49.9
PGR102G3207 Punica granatum HOM05D006741 ORTHO05D008434 2.7e-102 376.7 521 47.4
Migut.I00896 Erythranthe guttata HOM05D006741 ORTHO05D008434 4.5e-102 375.9 475 50.1
ClCG07G013320 Citrullus lanatus HOM05D006741 ORTHO05D008434 3.3e-100 369.8 549 45.4
arahy.Tifrunner.gnm1.ann1.CS2PXA Arachis hypogaea HOM05D006741 ORTHO05D008434 9.5e-100 368.2 444 49.5
MD09G1202700 Malus domestica HOM05D006741 ORTHO05D008434 9.5e-100 368.2 516 48.3
Nitab4.5_0001172g0120 Nicotiana tabacum HOM05D006741 ORTHO05D008434 1.2e-99 367.9 531 47.5
MELO3C013001.2 Cucumis melo HOM05D006741 ORTHO05D008434 1.8e-98 364.0 536 45.7
Solyc12g044620.2 Solanum lycopersicum HOM05D006741 ORTHO05D008434 1.8e-98 364.0 541 45.5
PGSC0003DMG400026441 Solanum tuberosum HOM05D006741 ORTHO05D008434 4.4e-97 359.4 515 46.2
Hund28870 Selenicereus undatus HOM05D006741 ORTHO05D008434 9.8e-97 358.2 508 46.5
CsaV3_3G023590 Cucumis sativus L. HOM05D006741 ORTHO05D008434 3.7e-96 356.3 482 47.5
MBI01_g10133_MAGBIO Magnolia biondii HOM05D006741 ORTHO05D008434 3.7e-96 356.3 507 45.6
Sopen12g023080 Solanum pennellii HOM05D006741 ORTHO05D008434 1.6e-94 350.9 541 44.7
Hund28829 Selenicereus undatus HOM05D006741 ORTHO05D008434 4.6e-94 349.4 499 45.9
Ciclev10027417m.g Citrus clementina HOM05D006741 ORTHO05D008434 1.6e-91 340.9 501 44.7
SGA_v2.0_scaffold69G23318 Striga asiatica HOM05D006741 ORTHO05D008434 2.8e-91 340.1 494 47.2
HanXRQChr09g0276261 Helianthus annuus HOM05D006741 ORTHO05D008434 6.8e-90 335.5 479 46.3
Nitab4.5_0004241g0050 Nicotiana tabacum HOM05D006741 ORTHO05D008434 7.5e-89 332.0 516 45.2
Ca_23263_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 4.9e-88 329.3 472 47.7
Ca_23272_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 4.9e-88 329.3 472 47.7
Hma1.2p1_0430F.1_g151390 Hydrangea macrophylla HOM05D006741 ORTHO05D008434 8.3e-88 328.6 490 46.3
Medtr8g014490 Medicago truncatula HOM05D006741 ORTHO05D008434 1.9e-87 327.4 455 46.2
ECA232G4726 Erigeron canadensis HOM05D006741 ORTHO05D008434 4.1e-87 326.2 479 45.9
TPR.G26946 Trifolium pratense HOM05D006741 ORTHO05D008434 3.9e-85 319.7 514 43.6
Lsat_1_v5_gn_4_97420 Lactuca sativa HOM05D006741 ORTHO05D008434 2.5e-84 317.0 502 43.4
Psat4g197400 Pisum sativum HOM05D006741 ORTHO05D008434 4.0e-82 309.7 445 44.5
Glyma.08G200900 Glycine max HOM05D006741 ORTHO05D008434 2.9e-80 303.5 436 45.6
Peaxi162Scf00177g00125 Petunia axillaris HOM05D006741 ORTHO05D008434 2.9e-80 303.5 450 44.7
Ah.01g005790 Amaranthus hybridus HOM05D006741 ORTHO05D008434 2.7e-78 297.0 503 41.9
AUR62031924 Chenopodium quinoa HOM05D006741 ORTHO05D008434 3.5e-78 296.6 502 41.0
THA.LOC104806335 Tarenaya hassleriana HOM05D006741 ORTHO05D008434 7.8e-78 295.4 485 39.6
RcHm_v2.0_Chr2g0140551 Rosa chinensis HOM05D006741 ORTHO05D008434 1.3e-77 294.7 502 44.2
ClCG00G003340 Citrullus lanatus HOM05D006741 ORTHO05D008434 4.3e-76 289.7 439 43.1
Nn8g39070 Nelumbo nucifera HOM05D006741 ORTHO05D008434 2.4e-74 283.9 374 45.2
Glyma.07G015400 Glycine max HOM05D006741 ORTHO05D008434 3.4e-73 280.0 429 44.3
VMungo0331G0583 Vigna mungo HOM05D006741 ORTHO05D008434 3.4e-73 280.0 452 42.9
EL10Ac3g05317 Beta vulgaris HOM05D006741 ORTHO05D008434 1.3e-72 278.1 500 39.8
Dinv37976 Davidia involucrata HOM05D006741 ORTHO05D008434 1.3e-72 278.1 246 61.8
Phvul.010G145200 Phaseolus vulgaris HOM05D006741 ORTHO05D008434 8.4e-72 275.4 460 41.7
FAN14G5382 Fragaria x ananassa HOM05D006741 ORTHO05D008434 1.4e-71 274.6 500 42.6
FvH4_6g32410 Fragaria vesca HOM05D006741 ORTHO05D008434 1.9e-71 274.2 500 42.6
Aa31LG9G10130 Aethionema arabicum HOM05D006741 ORTHO05D008434 1.7e-69 267.7 444 41.0
FAN05G1069 Fragaria x ananassa HOM05D006741 ORTHO05D008434 2.3e-69 267.3 488 42.8
AL6G47480 Arabidopsis lyrata HOM05D006741 ORTHO05D008434 3.9e-69 266.5 445 41.1
Carub.0006s3171 Capsella rubella HOM05D006741 ORTHO05D008434 2.5e-68 263.8 469 37.7
FAN02G4526 Fragaria x ananassa HOM05D006741 ORTHO05D008434 1.2e-67 261.5 505 40.6
AT4G12540 Arabidopsis thaliana HOM05D006741 ORTHO05D008434 2.8e-67 260.4 459 39.7
Thhalv10028639m.g Eutrema salsugineum HOM05D006741 ORTHO05D008434 1.2e-65 255.0 445 40.4
CARHR253650 Cardamine hirsuta HOM05D006741 ORTHO05D008434 3.0e-61 240.4 447 38.0
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 9.6e-60 235.3 480 41.5
Sp6g04980 Schrenkiella parvula HOM05D006741 ORTHO05D008434 2.8e-59 233.8 464 36.9
SpUn0055_0020 Schrenkiella parvula HOM05D006741 ORTHO05D008434 1.1e-58 231.9 462 36.6
A09p26830 Brassica napus HOM05D006741 ORTHO05D008434 1.2e-57 228.4 457 38.9
BcaC04g21238 Brassica carinata HOM05D006741 ORTHO05D008434 2.6e-57 227.3 440 40.2
C09p34000 Brassica napus HOM05D006741 ORTHO05D008434 2.6e-57 227.3 440 40.2
BolC9t56238H Brassica oleracea HOM05D006741 ORTHO05D008434 2.6e-57 227.3 440 40.2
BraA09t38254Z Brassica rapa HOM05D006741 ORTHO05D008434 9.9e-57 225.3 470 38.9
CDE02G1085 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 3.2e-55 220.3 483 36.6
TAR624G0518 Trochodendron aralioides HOM05D006741 ORTHO05D008434 7.6e-49 199.1 224 49.6
Actinidia32099 Actinidia chinensis HOM05D006741 ORTHO05D008434 3.8e-48 196.8 482 35.9
ATR0705G093 Amborella trichopoda HOM05D006741 ORTHO05D008434 2.1e-46 191.0 409 36.2
Os05g0532500 Oryza sativa ssp. japonica HOM05D006741 ORTHO05D008434 2.9e-40 170.6 481 31.6
Cpa.g.sc25.28 Carica papaya HOM05D006741 ORTHO05D008434 3.8e-40 170.2 271 41.0
Zm00001eb353790 Zea mays HOM05D006741 ORTHO05D008434 2.5e-28 131.0 503 28.4
CDE04G0136 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 1.7e-24 118.2 222 38.7
unitig_748.g7441 Utricularia gibba HOM05D006741 ORTHO05D008434 6.5e-24 116.3 261 36.4
unitig_748.g7440 Utricularia gibba HOM05D006741 ORTHO05D008434 7.9e-22 109.4 142 43.7
BcaC01g04588 Brassica carinata HOM05D006741 ORTHO05D008434 2.8e-19 100.9 286 33.2
ECA234G0697 Erigeron canadensis HOM05D006741 ORTHO05D008434 5.3e-10 70.1 207 33.3
Dinv11548 Davidia involucrata HOM05D065926 ORTHO05D008434 2.0e-09 68.2 61 59.0
C03p36010 Brassica napus HOM05D006741 ORTHO05D008434 1.3e-08 65.5 54 61.1
BolC3t15911H Brassica oleracea HOM05D006741 ORTHO05D008434 1.3e-08 65.5 54 61.1
CDE04G1568 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 1.7e-08 65.1 94 39.4


User provided reference genes

Program Settings