Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034568 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 1.0e-66 256.5 122 100.0
CSS0006246 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 9.5e-41 170.2 121 71.1
CSS0015804 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 1.6e-40 169.5 124 66.9
CSS0049829 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 4.4e-30 134.8 125 59.2
CSS0019428 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 3.0e-26 122.1 78 76.9
CSS0046945 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 1.1e-25 120.2 117 55.6
CSS0040407 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 1.2e-22 110.2 68 79.4
CSS0044825 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 4.4e-22 108.2 72 70.8
vmacro07661 Vaccinium macrocarpon HOM05D002156 ORTHO05D002328 7.6e-22 107.5 82 64.6
Actinidia37813 Actinidia chinensis HOM05D002156 ORTHO05D002328 9.9e-22 107.1 82 64.6
Rhsim03G0050200 Rhododendron simsii HOM05D002156 ORTHO05D002328 4.9e-21 104.8 82 63.4
Hma1.2p1_1039F.1_g250900 Hydrangea macrophylla HOM05D002156 ORTHO05D002328 6.4e-21 104.4 68 72.1
Peaxi162Scf01344g00018 Petunia axillaris HOM05D002156 ORTHO05D002328 6.4e-21 104.4 83 61.4
ClCG04G004550 Citrullus lanatus HOM05D002156 ORTHO05D002328 1.1e-20 103.6 76 63.2
RcHm_v2.0_Chr3g0496221 Rosa chinensis HOM05D002156 ORTHO05D002328 2.4e-20 102.4 76 63.2
CAN.G752.1 Capsicum annuum HOM05D002156 ORTHO05D002328 5.4e-20 101.3 76 64.5
GSVIVG01025814001 Vitis vinifera HOM05D002156 ORTHO05D002328 5.4e-20 101.3 79 60.8
Nitab4.5_0001720g0020 Nicotiana tabacum HOM05D002156 ORTHO05D002328 1.2e-19 100.1 81 59.3
QL07p017931 Quercus lobata HOM05D002156 ORTHO05D002328 2.1e-19 99.4 80 61.2
CSS0036393 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 3.5e-19 98.6 77 70.1
FAN23G2882 Fragaria x ananassa HOM05D002156 ORTHO05D002328 3.5e-19 98.6 76 60.5
Nn2g14545 Nelumbo nucifera HOM05D002156 ORTHO05D002328 3.5e-19 98.6 97 53.6
FvH4_1g28540 Fragaria vesca HOM05D002156 ORTHO05D002328 1.0e-18 97.1 73 61.6
FAN19G2483 Fragaria x ananassa HOM05D002156 ORTHO05D002328 1.0e-18 97.1 73 61.6
PGSC0003DMG400008732 Solanum tuberosum HOM05D002156 ORTHO05D002328 3.9e-18 95.1 76 61.8
Solyc01g057090.4 Solanum lycopersicum HOM05D002156 ORTHO05D002328 5.1e-18 94.7 76 61.8
Sopen01g021430 Solanum pennellii HOM05D002156 ORTHO05D002328 5.1e-18 94.7 76 61.8
THA.LOC104800404 Tarenaya hassleriana HOM05D002156 ORTHO05D002328 6.6e-18 94.4 88 58.0
Atru.chr2.1496 Acer truncatum HOM05D002156 ORTHO05D002328 8.7e-18 94.0 81 60.5
Cc06_g17240 Coffea canephora HOM05D002156 ORTHO05D002328 1.1e-17 93.6 88 55.7
THA.LOC104800077 Tarenaya hassleriana HOM05D002156 ORTHO05D002328 1.5e-17 93.2 88 58.0
THA.LOC104821409 Tarenaya hassleriana HOM05D002156 ORTHO05D002328 1.9e-17 92.8 88 55.7
MD14G1007100 Malus domestica HOM05D002156 ORTHO05D002328 2.5e-17 92.4 81 54.3
MELO3C008849.2 Cucumis melo HOM05D002156 ORTHO05D002328 3.3e-17 92.0 76 57.9
Oeu056497.3 Olea europaea HOM05D002156 ORTHO05D002328 3.3e-17 92.0 82 56.1
Prupe.7G011900 Prunus persica HOM05D002156 ORTHO05D002328 3.3e-17 92.0 67 62.7
DCAR_020655 Daucus carota HOM05D002156 ORTHO05D002328 5.6e-17 91.3 83 54.2
MSTRG.10750 Avicennia marina HOM05D002156 ORTHO05D002328 7.3e-17 90.9 78 55.1
EL10Ac5g11718 Beta vulgaris HOM05D002156 ORTHO05D002328 1.6e-16 89.7 67 61.2
Lj1A1067G36 Lonicera japonica HOM05D002156 ORTHO05D002328 1.6e-16 89.7 78 56.4
Ciclev10019878m.g Citrus clementina HOM05D002156 ORTHO05D002328 2.1e-16 89.4 80 53.8
AUR62038448 Chenopodium quinoa HOM05D002156 ORTHO05D002328 6.2e-16 87.8 89 49.4
CiPaw.09G168300 Carya illinoinensis HOM05D002156 ORTHO05D002328 8.1e-16 87.4 73 56.2
Duzib128G0733 Durio zibethinus HOM05D002156 ORTHO05D002328 8.1e-16 87.4 80 55.0
Migut.K00223 Erythranthe guttata HOM05D002156 ORTHO05D002328 8.1e-16 87.4 74 54.1
AUR62036257 Chenopodium quinoa HOM05D002156 ORTHO05D002328 1.1e-15 87.0 89 49.4
Lsat_1_v5_gn_1_55260 Lactuca sativa HOM05D002156 ORTHO05D002328 1.4e-15 86.7 82 51.2
Lsat_1_v5_gn_2_103620 Lactuca sativa HOM05D002156 ORTHO05D002328 1.8e-15 86.3 85 54.1
MBI11_g23644_MAGBIO Magnolia biondii HOM05D002156 ORTHO05D002328 1.8e-15 86.3 75 54.7
COL.COLO4_28629 Corchorus olitorius HOM05D002156 ORTHO05D002328 2.4e-15 85.9 70 58.6
Aqoxy2G00573 Aquilegia oxysepala HOM05D002156 ORTHO05D002328 4.0e-15 85.1 82 50.0
TPR.G17860 Trifolium pratense HOM05D002156 ORTHO05D002328 4.0e-15 85.1 80 53.8
CsaV3_4G011990 Cucumis sativus L. HOM05D002156 ORTHO05D002328 5.3e-15 84.7 83 53.0
Gohir.A11G230100 Gossypium hirsutum HOM05D002156 ORTHO05D002328 6.9e-15 84.3 73 52.1
Gorai.007G256200 Gossypium raimondii HOM05D002156 ORTHO05D002328 6.9e-15 84.3 73 52.1
Cfa017704 Carpinus fangiana HOM05D002156 ORTHO05D002328 9.0e-15 84.0 76 53.9
Haze_20432 Corylus avellana HOM05D002156 ORTHO05D002328 9.0e-15 84.0 76 53.9
Glyma.16G037000 Glycine max HOM05D002156 ORTHO05D002328 9.0e-15 84.0 64 57.8
Glyma.19G116100 Glycine max HOM05D002156 ORTHO05D002328 9.0e-15 84.0 64 57.8
PSO384G2429 Papaver somniferum HOM05D002156 ORTHO05D002328 1.2e-14 83.6 76 51.3
Psat3g087320 Pisum sativum HOM05D002156 ORTHO05D002328 1.2e-14 83.6 80 53.8
Aqoxy1G00521 Aquilegia oxysepala HOM05D002156 ORTHO05D002328 1.5e-14 83.2 79 48.1
Cpa.g.sc161.28 Carica papaya HOM05D002156 ORTHO05D002328 1.5e-14 83.2 82 50.0
MD12G1009900 Malus domestica HOM05D002156 ORTHO05D002328 1.5e-14 83.2 81 50.6
Thecc.05G243200 Theobroma cacao HOM05D002156 ORTHO05D002328 1.5e-14 83.2 80 50.0
Gohir.D11G241900 Gossypium hirsutum HOM05D002156 ORTHO05D002328 2.0e-14 82.8 73 50.7
Lj1g0011130 Lotus japonicus HOM05D002156 ORTHO05D002328 3.4e-14 82.0 92 46.7
Sabra13G0056700 Salix brachista HOM05D002156 ORTHO05D002328 3.4e-14 82.0 81 50.6
Manes.08G153900 Manihot esculenta HOM05D002156 ORTHO05D002328 4.5e-14 81.6 84 53.6
Phvul.001G115500 Phaseolus vulgaris HOM05D002156 ORTHO05D002328 4.5e-14 81.6 80 51.2
SGA_v2.0_scaffold17G07976 Striga asiatica HOM05D002156 ORTHO05D002328 4.5e-14 81.6 79 51.9
TAR623G0551 Trochodendron aralioides HOM05D002156 ORTHO05D002328 4.5e-14 81.6 52 73.1
Ca_08306_v3 Cicer arietinum L. HOM05D002156 ORTHO05D002328 7.6e-14 80.9 80 51.2
Gohir.A13G163900 Gossypium hirsutum HOM05D002156 ORTHO05D002328 9.9e-14 80.5 73 54.8
Medtr7g086460 Medicago truncatula HOM05D002156 ORTHO05D002328 9.9e-14 80.5 78 52.6
Gorai.013G195700 Gossypium raimondii HOM05D002156 ORTHO05D002328 1.3e-13 80.1 73 54.8
HanXRQChr11g0348131 Helianthus annuus HOM05D002156 ORTHO05D002328 1.3e-13 80.1 82 50.0
Sc07g0007830 Simmondsia chinensis HOM05D002156 ORTHO05D002328 1.3e-13 80.1 107 41.1
SalBow1G7226 Salvia bowleyana HOM05D002156 ORTHO05D002328 1.7e-13 79.7 77 49.4
arahy.Tifrunner.gnm1.ann1.7VP81J Arachis hypogaea HOM05D002156 ORTHO05D002328 2.2e-13 79.3 73 54.8
arahy.Tifrunner.gnm1.ann1.M0VUV2 Arachis hypogaea HOM05D002156 ORTHO05D002328 2.9e-13 79.0 62 59.7
Gohir.D13G166800 Gossypium hirsutum HOM05D002156 ORTHO05D002328 2.9e-13 79.0 73 54.8
Duzib106G2010 Durio zibethinus HOM05D002156 ORTHO05D002328 4.9e-13 78.2 75 50.7
TWI32G0999 Tripterygium wilfordii HOM05D002156 ORTHO05D002328 4.9e-13 78.2 73 56.2
Lalb_Chr14g0364791 Lupinus albus HOM05D002156 ORTHO05D002328 6.4e-13 77.8 63 57.1
VMungo1383G3546 Vigna mungo HOM05D002156 ORTHO05D002328 8.4e-13 77.4 75 49.3
ATR0618G027 Amborella trichopoda HOM05D002156 ORTHO05D002328 1.9e-12 76.3 68 52.9
Sed0023631 Sechium edule HOM05D002156 ORTHO05D002328 1.9e-12 76.3 64 56.2
Gohir.D06G126975 Gossypium hirsutum HOM05D002156 ORTHO05D002328 3.2e-12 75.5 73 50.7
A07p31440 Brassica napus HOM05D002156 ORTHO05D002328 4.2e-12 75.1 71 53.5
Potri.013G064800 Populus trichocarpa HOM05D002156 ORTHO05D002328 5.4e-12 74.7 82 48.8
TWI34G0345 Tripterygium wilfordii HOM05D002156 ORTHO05D002328 5.4e-12 74.7 65 56.9
Nitab4.5_0000098g0160 Nicotiana tabacum HOM05D002156 ORTHO05D002328 9.3e-12 73.9 57 61.4
ECA248G3031 Erigeron canadensis HOM05D002156 ORTHO05D002328 1.2e-11 73.6 79 48.1
Carub.0001s2716 Capsella rubella HOM05D002156 ORTHO05D002328 1.6e-11 73.2 71 50.7
Eucgr.A02134 Eucalyptus grandis HOM05D002156 ORTHO05D002328 1.6e-11 73.2 92 41.3
Gorai.004G099300 Gossypium raimondii HOM05D002156 ORTHO05D002328 1.6e-11 73.2 73 50.7
BraA07t30779Z Brassica rapa HOM05D002156 ORTHO05D002328 2.1e-11 72.8 71 52.1
Gohir.D08G093700 Gossypium hirsutum HOM05D002156 ORTHO05D002328 2.1e-11 72.8 73 50.7
AL1G42570 Arabidopsis lyrata HOM05D002156 ORTHO05D002328 2.7e-11 72.4 71 50.7
C06p36730 Brassica napus HOM05D002156 ORTHO05D002328 2.7e-11 72.4 71 52.1
BolC6t38783H Brassica oleracea HOM05D002156 ORTHO05D002328 2.7e-11 72.4 71 52.1
ECA238G1359 Erigeron canadensis HOM05D002156 ORTHO05D002328 2.7e-11 72.4 74 50.0
HanXRQChr07g0197191 Helianthus annuus HOM05D002156 ORTHO05D002328 2.7e-11 72.4 87 41.4
CARHR028160 Cardamine hirsuta HOM05D002156 ORTHO05D002328 4.6e-11 71.6 71 50.7
BcaB03g15489 Brassica carinata HOM05D002156 ORTHO05D002328 6.0e-11 71.2 71 50.7
Sed0005796 Sechium edule HOM05D002156 ORTHO05D002328 6.0e-11 71.2 59 55.9
BcaC08g45876 Brassica carinata HOM05D002156 ORTHO05D002328 7.9e-11 70.9 71 52.1
Sp5g24790 Schrenkiella parvula HOM05D002156 ORTHO05D002328 5.1e-10 68.2 61 50.8
AT1G28760 Arabidopsis thaliana HOM05D002156 ORTHO05D002328 6.7e-10 67.8 81 48.1
PGR042G0405 Punica granatum HOM05D002156 ORTHO05D002328 6.7e-10 67.8 81 42.0
Thhalv10018456m.g Eutrema salsugineum HOM05D002156 ORTHO05D002328 2.5e-09 65.9 80 47.5
HPP92_012146 Vanilla planifolia HOM05D002156 ORTHO05D002328 1.3e-08 63.5 78 46.2
Migut.H00340 Erythranthe guttata HOM05D002156 ORTHO05D002328 9.0e-07 57.4 54 51.9
Atru.chr8.2310 Acer truncatum HOM05D002156 ORTHO05D002328 1.2e-06 57.0 68 44.1
DCAR_025812 Daucus carota HOM05D003138 ORTHO05D003789 3.4e-06 55.5 79 38.0
SEGI_16432 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 3.4e-06 55.5 58 46.6
Actinidia34534 Actinidia chinensis HOM05D002156 ORTHO05D002328 5.8e-06 54.7 44 52.3
CSS0028846 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 7.6e-06 54.3 54 46.3
SGA_v2.0_scaffold15G07468 Striga asiatica HOM05D002156 ORTHO05D002328 7.6e-06 54.3 48 52.1
Duzib147G1396 Durio zibethinus HOM05D002156 ORTHO05D002328 1.0e-05 53.9 57 47.4
Sabra07G0004000 Salix brachista HOM05D002156 ORTHO05D002328 1.0e-05 53.9 91 35.2
SalBow3G0792 Salvia bowleyana HOM05D002156 ORTHO05D002328 1.0e-05 53.9 44 54.5


User provided reference genes

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