Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034562 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 6.9e-130 467.2 223 100.0
CSS0041908 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 6.9e-130 467.2 223 100.0
Actinidia36059 Actinidia chinensis HOM05D005581 ORTHO05D006792 2.9e-96 355.5 203 82.8
Dinv33676 Davidia involucrata HOM05D005581 ORTHO05D006792 1.5e-95 353.2 203 79.8
Actinidia06044 Actinidia chinensis HOM05D005581 ORTHO05D006792 2.0e-92 342.8 203 80.8
Hma1.2p1_1975F.1_g309690 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 1.2e-89 333.6 197 80.2
RhsimUnG0168100 Rhododendron simsii HOM05D005581 ORTHO05D006792 8.5e-88 327.4 195 79.0
Peaxi162Scf00129g00828 Petunia axillaris HOM05D000793 ORTHO05D000783 3.4e-84 315.5 200 73.5
Oeu062376.1 Olea europaea HOM05D005581 ORTHO05D006792 1.7e-83 313.2 201 73.6
TAR629G0716 Trochodendron aralioides HOM05D005581 ORTHO05D006792 1.7e-83 313.2 205 72.2
GSVIVG01032543001 Vitis vinifera HOM05D005581 ORTHO05D006792 2.8e-83 312.4 200 74.5
Prupe.3G278300 Prunus persica HOM05D005581 ORTHO05D006792 6.3e-83 311.2 201 72.1
Hma1.2p1_0375F.1_g139010 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 1.2e-81 307.0 194 75.3
Sc06g0002610 Simmondsia chinensis HOM05D005581 ORTHO05D006792 1.2e-81 307.0 187 74.9
Nn3g17019 Nelumbo nucifera HOM05D005581 ORTHO05D006792 2.7e-81 305.8 208 67.3
Cfa007475 Carpinus fangiana HOM05D005581 ORTHO05D006792 3.5e-81 305.4 203 71.4
PGSC0003DMG400001392 Solanum tuberosum HOM05D005581 ORTHO05D006792 5.9e-81 304.7 192 73.4
Eucgr.J02171 Eucalyptus grandis HOM05D005581 ORTHO05D006792 7.7e-81 304.3 193 72.5
Ciclev10016724m.g Citrus clementina HOM05D005581 ORTHO05D006792 1.0e-80 303.9 182 77.5
Potri.001G470300 Populus trichocarpa HOM05D005581 ORTHO05D006792 1.3e-80 303.5 197 72.6
Manes.15G178800 Manihot esculenta HOM05D005581 ORTHO05D006792 2.9e-80 302.4 193 73.1
Nitab4.5_0004905g0030 Nicotiana tabacum HOM05D000793 ORTHO05D006792 3.8e-80 302.0 194 72.7
Solyc02g087250.4 Solanum lycopersicum HOM05D000793 ORTHO05D000783 3.8e-80 302.0 196 71.4
Sopen02g032000 Solanum pennellii HOM05D005581 ORTHO05D006792 3.8e-80 302.0 196 70.9
Nitab4.5_0007185g0080 Nicotiana tabacum HOM05D005581 ORTHO05D006792 5.0e-80 301.6 197 71.6
QL02p078462 Quercus lobata HOM05D005581 ORTHO05D006792 6.5e-80 301.2 177 78.5
CAN.G206.63 Capsicum annuum HOM05D005581 ORTHO05D006792 1.1e-79 300.4 186 74.2
PGR083G1021 Punica granatum HOM05D005581 ORTHO05D006792 1.9e-79 299.7 193 71.0
Lalb_Chr05g0228941 Lupinus albus HOM05D005581 ORTHO05D006792 3.2e-79 298.9 196 72.4
COL.COLO4_06153 Corchorus olitorius HOM05D000793 ORTHO05D000783 4.2e-79 298.5 216 65.7
Medtr7g030020 Medicago truncatula HOM05D005581 ORTHO05D006792 7.2e-79 297.7 203 70.4
Medtr7g038730 Medicago truncatula HOM05D005581 ORTHO05D006792 7.2e-79 297.7 203 70.4
Hund12510 Selenicereus undatus HOM05D005581 ORTHO05D006792 7.2e-79 297.7 175 77.7
Ciclev10012718m.g Citrus clementina HOM05D005581 ORTHO05D006792 1.2e-78 297.0 193 72.5
arahy.Tifrunner.gnm1.ann1.E9CGF1 Arachis hypogaea HOM05D005581 ORTHO05D006792 2.7e-78 295.8 185 74.6
Lj2g0014392 Lotus japonicus HOM05D005581 ORTHO05D006792 2.7e-78 295.8 188 74.5
Oeu031508.1 Olea europaea HOM05D005581 ORTHO05D006792 2.7e-78 295.8 201 69.2
MELO3C033644.2 Cucumis melo HOM05D005581 ORTHO05D006792 3.6e-78 295.4 200 70.0
Thecc.04G002800 Theobroma cacao HOM05D005581 ORTHO05D006792 3.6e-78 295.4 201 68.2
Duzib187G0556 Durio zibethinus HOM05D005581 ORTHO05D006792 6.1e-78 294.7 193 71.5
Glyma.13G116200 Glycine max HOM05D005581 ORTHO05D006792 1.0e-77 293.9 176 76.7
MSTRG.23979 Avicennia marina HOM05D005581 ORTHO05D006792 1.4e-77 293.5 175 76.6
Migut.H00163 Erythranthe guttata HOM05D005581 ORTHO05D006792 1.4e-77 293.5 177 76.3
Sabra16G0319200 Salix brachista HOM05D005581 ORTHO05D006792 1.4e-77 293.5 197 71.1
arahy.Tifrunner.gnm1.ann1.2M0NJC Arachis hypogaea HOM05D005581 ORTHO05D006792 2.3e-77 292.7 185 74.1
RcHm_v2.0_Chr2g0170291 Rosa chinensis HOM05D005581 ORTHO05D006792 2.3e-77 292.7 194 70.6
Lj2g0006948 Lotus japonicus HOM05D005581 ORTHO05D006792 6.8e-77 291.2 171 77.8
TPR.G39154 Trifolium pratense HOM05D005581 ORTHO05D006792 6.8e-77 291.2 175 76.6
Duzib147G0516 Durio zibethinus HOM05D005581 ORTHO05D006792 8.8e-77 290.8 191 71.2
CsaV3_5G037490 Cucumis sativus L. HOM05D005581 ORTHO05D006792 2.6e-76 289.3 199 68.3
PSO591G0467 Papaver somniferum HOM05D005581 ORTHO05D006792 2.6e-76 289.3 192 68.8
FAN05G2284 Fragaria x ananassa HOM05D005581 ORTHO05D006792 4.4e-76 288.5 195 68.7
DCAR_003657 Daucus carota HOM05D005581 ORTHO05D006792 7.5e-76 287.7 169 76.3
DCAR_011192 Daucus carota HOM05D005581 ORTHO05D006792 9.8e-76 287.3 210 67.1
TWI12G0742 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 1.3e-75 287.0 191 73.3
Gohir.A07G217500 Gossypium hirsutum HOM05D005581 ORTHO05D006792 2.2e-75 286.2 195 68.2
Gohir.D07G224600 Gossypium hirsutum HOM05D005581 ORTHO05D006792 2.2e-75 286.2 195 68.2
VMungo1215G0614 Vigna mungo HOM05D005581 ORTHO05D006792 2.2e-75 286.2 178 73.6
EL10Ac7g18001 Beta vulgaris HOM05D005581 ORTHO05D006792 2.8e-75 285.8 195 70.8
Sed0016453 Sechium edule HOM05D005581 ORTHO05D006792 2.8e-75 285.8 199 66.8
CDE06G0044 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 3.7e-75 285.4 197 67.0
PSO832G0275 Papaver somniferum HOM05D005581 ORTHO05D006792 3.7e-75 285.4 212 64.6
Cpa.g.sc14.80 Carica papaya HOM05D005581 ORTHO05D006792 4.9e-75 285.0 189 71.4
CiPaw.04G022300 Carya illinoinensis HOM05D005581 ORTHO05D006792 6.3e-75 284.6 200 67.5
FvH4_6g50030 Fragaria vesca HOM05D005581 ORTHO05D006792 8.3e-75 284.3 193 68.9
MD17G1040700 Malus domestica HOM05D005581 ORTHO05D006792 8.3e-75 284.3 200 68.5
FAN09G0871 Fragaria x ananassa HOM05D005581 ORTHO05D006792 1.1e-74 283.9 191 69.6
FAN14G0942 Fragaria x ananassa HOM05D005581 ORTHO05D006792 1.1e-74 283.9 191 69.6
Phvul.003G125600 Phaseolus vulgaris HOM05D005581 ORTHO05D006792 1.4e-74 283.5 196 67.3
ECA240G2828 Erigeron canadensis HOM05D005581 ORTHO05D006792 4.1e-74 282.0 191 68.1
Gohir.A05G361700 Gossypium hirsutum HOM05D005581 ORTHO05D006792 4.1e-74 282.0 193 67.9
Lsat_1_v5_gn_0_16520 Lactuca sativa HOM05D005581 ORTHO05D006792 5.4e-74 281.6 192 68.8
arahy.Tifrunner.gnm1.ann1.B679M5 Arachis hypogaea HOM05D005581 ORTHO05D006792 7.0e-74 281.2 193 69.9
arahy.Tifrunner.gnm1.ann1.UYM2HQ Arachis hypogaea HOM05D005581 ORTHO05D006792 9.2e-74 280.8 193 69.4
Ca_19611_v3 Cicer arietinum L. HOM05D005581 ORTHO05D006792 9.2e-74 280.8 176 74.4
SGA_v2.0_scaffold135G34832 Striga asiatica HOM05D005581 ORTHO05D006792 9.2e-74 280.8 203 65.5
Atru.BG.224.p Acer truncatum HOM05D005581 ORTHO05D006792 1.2e-73 280.4 165 78.8
PSO063G2781 Papaver somniferum HOM05D005581 ORTHO05D006792 1.2e-73 280.4 183 69.9
Lalb_Chr21g0319231 Lupinus albus HOM05D005581 ORTHO05D006792 1.6e-73 280.0 199 66.3
Gorai.001G259000 Gossypium raimondii HOM05D005581 ORTHO05D006792 2.7e-73 279.3 176 72.2
Gorai.012G059200 Gossypium raimondii HOM05D005581 ORTHO05D006792 2.7e-73 279.3 190 67.9
Gohir.D04G052800 Gossypium hirsutum HOM05D005581 ORTHO05D006792 3.5e-73 278.9 193 66.8
Aqoxy3G03110 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 4.5e-73 278.5 202 64.4
ATR0624G029 Amborella trichopoda HOM05D005581 ORTHO05D006792 1.0e-72 277.3 168 73.8
Hund20033 Selenicereus undatus HOM05D005581 ORTHO05D006792 1.7e-72 276.6 194 69.1
Psat3g165640 Pisum sativum HOM05D005581 ORTHO05D006792 2.9e-72 275.8 196 66.3
SalBow1G8695 Salvia bowleyana HOM05D005581 ORTHO05D006792 3.8e-72 275.4 196 66.8
AUR62022121 Chenopodium quinoa HOM05D005581 ORTHO05D006792 1.1e-71 273.9 192 67.7
AUR62001208 Chenopodium quinoa HOM05D005581 ORTHO05D006792 1.9e-71 273.1 192 67.7
SHI25585 Sapria himalayana HOM05D005581 ORTHO05D006792 3.3e-71 272.3 181 69.1
MBI15_g35865_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 4.3e-71 271.9 172 73.3
ClCG00G001710 Citrullus lanatus HOM05D005581 ORTHO05D006792 5.6e-71 271.6 214 61.7
ClCG09G018630 Citrullus lanatus HOM05D005581 ORTHO05D006792 5.6e-71 271.6 214 61.7
PSO832G2358 Papaver somniferum HOM05D005581 ORTHO05D006792 5.6e-71 271.6 206 65.0
Os06g0238300 Oryza sativa ssp. japonica HOM05D005581 ORTHO05D006792 9.5e-71 270.8 177 68.9
AT2G04690 Arabidopsis thaliana HOM05D005581 ORTHO05D006792 4.7e-70 268.5 174 71.3
Zm00001eb279970 Zea mays HOM05D005581 ORTHO05D006792 1.8e-69 266.5 185 65.4
Lj7A408G12 Lonicera japonica HOM05D005581 ORTHO05D006792 4.0e-69 265.4 145 80.0
CARHR102620 Cardamine hirsuta HOM05D005581 ORTHO05D006792 5.2e-69 265.0 174 70.7
AL3G42310 Arabidopsis lyrata HOM05D005581 ORTHO05D006792 8.9e-69 264.2 174 71.8
HPP92_026859 Vanilla planifolia HOM05D005581 ORTHO05D006792 8.9e-69 264.2 192 64.6
Carub.0003s2629 Capsella rubella HOM05D005581 ORTHO05D006792 1.2e-68 263.8 173 71.7
vmacro05787 Vaccinium macrocarpon HOM05D005581 ORTHO05D006792 5.7e-68 261.5 152 80.9
Aqoxy3G03108 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 9.8e-68 260.8 166 71.1
EL10Ac7g18000 Beta vulgaris HOM05D005581 ORTHO05D006792 3.7e-67 258.8 176 69.9
TWI12G0286 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 8.3e-67 257.7 193 66.3
Thhalv10027934m.g Eutrema salsugineum HOM05D005581 ORTHO05D006792 7.8e-65 251.1 174 67.8
SEGI_16176 Sequoiadendron giganteum HOM05D005581 ORTHO05D006792 5.6e-63 245.0 182 60.4
THA.LOC104823921 Tarenaya hassleriana HOM05D005581 ORTHO05D006792 7.3e-63 244.6 188 63.3
BcaB06g27424 Brassica carinata HOM05D005581 ORTHO05D006792 2.8e-62 242.7 191 59.7
Sp7g01930 Schrenkiella parvula HOM05D005581 ORTHO05D006792 2.8e-62 242.7 174 65.5
C04p46650 Brassica napus HOM05D005581 ORTHO05D006792 1.4e-61 240.4 174 64.9
BolC4t26253H Brassica oleracea HOM05D005581 ORTHO05D006792 1.4e-61 240.4 174 64.9
A04p12950 Brassica napus HOM05D005581 ORTHO05D006792 4.0e-61 238.8 174 65.5
BraA04t16955Z Brassica rapa HOM05D005581 ORTHO05D006792 4.0e-61 238.8 174 64.9
MD09G1040100 Malus domestica HOM05D005581 ORTHO05D006792 1.1e-58 230.7 311 43.4
Atru.chr8.2410 Acer truncatum HOM05D005581 ORTHO05D006792 1.1e-55 220.7 128 76.6
Cc07_g02660 Coffea canephora HOM05D005581 ORTHO05D006792 4.7e-54 215.3 151 67.5
AagrBONN_evm.TU.Sc2ySwM_368.1768 Anthoceros agrestis HOM05D005581 ORTHO05D006792 5.8e-52 208.4 176 54.0
Psat3g011960 Pisum sativum HOM05D005581 ORTHO05D006792 1.3e-51 207.2 157 66.2
SMO356G0730 Selaginella moellendorffii HOM05D005581 ORTHO05D006792 2.2e-51 206.5 189 54.5
Aa31LG9G1540 Aethionema arabicum HOM05D005581 ORTHO05D006792 7.1e-50 201.4 152 65.8
Mapoly0035s0056 Marchantia polymorpha HOM05D005581 ORTHO05D006792 6.0e-49 198.4 171 50.9
Haze_14640 Corylus avellana HOM05D005581 ORTHO05D006792 8.6e-48 194.5 134 70.9
Pp3c1_40840 Physcomitrium patens HOM05D005581 ORTHO05D006792 1.2e-41 174.1 196 43.4
Migut.N00270 Erythranthe guttata HOM05D005581 ORTHO05D006792 3.6e-38 162.5 171 49.1
CBR_g36833 Chara braunii HOM05D005581 ORTHO05D006792 2.4e-37 159.8 184 42.9
MSTRG.21916 Avicennia marina HOM05D005581 ORTHO05D006792 2.6e-36 156.4 164 51.2
Migut.H00162 Erythranthe guttata HOM05D005581 ORTHO05D006792 1.7e-35 153.7 158 49.4
Migut.H00166 Erythranthe guttata HOM05D005581 ORTHO05D006792 5.4e-34 148.7 159 48.4
PRCOL_00005184 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 7.8e-33 144.8 172 41.9
Glyma.17G043600 Glycine max HOM05D005581 ORTHO05D006792 5.6e-31 138.7 77 79.2
SalBow3G2496 Salvia bowleyana HOM05D005581 ORTHO05D006792 2.6e-28 129.8 169 40.2
Cre10.g440700 Chlamydomonas reinhardtii HOM05D005581 ORTHO05D006792 7.6e-28 128.3 197 32.5
HPP92_018422 Vanilla planifolia HOM05D005581 ORTHO05D006792 1.9e-18 97.1 61 62.3
PRCOL_00002387 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 3.9e-16 89.4 167 32.9
HanXRQChr17g0548091 Helianthus annuus HOM05D005581 ORTHO05D006792 6.2e-14 82.0 62 56.5
CDE06G0755 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 5.3e-13 79.0 47 72.3
arahy.Tifrunner.gnm1.ann1.C3UJQ4 Arachis hypogaea HOM05D005581 ORTHO05D006792 6.9e-13 78.6 71 56.3
MBI15_g46244_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 2.1e-09 67.0 144 33.3


User provided reference genes

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