Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034559 Camellia sinensis var. sinensis HOM05D004941 ORTHO05D005624 2.8e-73 278.5 139 100.0
CSS0021875 Camellia sinensis var. sinensis HOM05D004941 ORTHO05D005624 1.2e-50 203.4 104 96.2
SGA_v2.0_scaffold57G20152 Striga asiatica HOM05D004941 ORTHO05D005624 4.9e-49 198.0 104 93.3
TAR365G1102 Trochodendron aralioides HOM05D004941 ORTHO05D005624 1.4e-48 196.4 104 91.3
PGR142G1301 Punica granatum HOM05D004941 ORTHO05D005624 1.8e-48 196.1 104 91.3
Dinv29557 Davidia involucrata HOM05D004941 ORTHO05D005624 2.4e-48 195.7 104 91.3
CANSAT78G1419 Cannabis sativa HOM05D004941 ORTHO05D005624 4.1e-48 194.9 104 90.4
RcHm_v2.0_Chr4g0396981 Rosa chinensis HOM05D004941 ORTHO05D005624 7.0e-48 194.1 104 91.3
Sabra01G0036700 Salix brachista HOM05D004941 ORTHO05D005624 7.0e-48 194.1 104 91.3
Prupe.1G061100 Prunus persica HOM05D004941 ORTHO05D005624 9.2e-48 193.7 104 90.4
Sed0000115 Sechium edule HOM05D004941 ORTHO05D005624 9.2e-48 193.7 104 90.4
Manes.03G152200 Manihot esculenta HOM05D004941 ORTHO05D005624 1.2e-47 193.4 104 91.3
TAR636G2508 Trochodendron aralioides HOM05D004941 ORTHO05D005624 1.2e-47 193.4 104 89.4
Actinidia34635 Actinidia chinensis HOM05D004941 ORTHO05D005624 1.6e-47 193.0 104 89.4
Cpa.g.sc59.94 Carica papaya HOM05D004941 ORTHO05D005624 1.6e-47 193.0 106 87.7
Eucgr.H00092 Eucalyptus grandis HOM05D004941 ORTHO05D005624 1.6e-47 193.0 104 89.4
FvH4_4g05880 Fragaria vesca HOM05D004941 ORTHO05D005624 1.6e-47 193.0 104 90.4
FAN12G1018 Fragaria x ananassa HOM05D004941 ORTHO05D005624 1.6e-47 193.0 104 90.4
FAN17G1669 Fragaria x ananassa HOM05D004941 ORTHO05D005624 1.6e-47 193.0 104 90.4
FAN22G1917 Fragaria x ananassa HOM05D004941 ORTHO05D005624 1.6e-47 193.0 104 90.4
PGR083G0368 Punica granatum HOM05D004941 ORTHO05D005624 1.6e-47 193.0 104 91.3
Lj6C612G1 Lonicera japonica HOM05D004941 ORTHO05D005624 2.7e-47 192.2 104 89.4
Oeu022332.1 Olea europaea HOM05D004941 ORTHO05D005624 2.7e-47 192.2 104 89.4
MSTRG.4206 Avicennia marina HOM05D004941 ORTHO05D005624 3.5e-47 191.8 104 88.5
MD16G1235900 Malus domestica HOM05D004941 ORTHO05D005624 3.5e-47 191.8 104 88.5
Manes.15G050400 Manihot esculenta HOM05D004941 ORTHO05D005624 3.5e-47 191.8 104 91.3
CsaV3_3G011260 Cucumis sativus L. HOM05D004941 ORTHO05D005624 4.6e-47 191.4 104 88.5
Oeu006717.1 Olea europaea HOM05D004941 ORTHO05D005624 4.6e-47 191.4 107 86.9
SGA_v2.0_scaffold155G37216 Striga asiatica HOM05D004941 ORTHO05D005624 4.6e-47 191.4 104 90.4
TWI09G1152 Tripterygium wilfordii HOM05D004941 ORTHO05D005624 4.6e-47 191.4 104 90.4
ClCG05G003570 Citrullus lanatus HOM05D004941 ORTHO05D005624 5.9e-47 191.0 104 88.5
MELO3C006336.2 Cucumis melo HOM05D004941 ORTHO05D005624 5.9e-47 191.0 104 88.5
THA.LOC104801049 Tarenaya hassleriana HOM05D004941 ORTHO05D005624 5.9e-47 191.0 104 89.4
Duzib151G0226 Durio zibethinus HOM05D004941 ORTHO05D005624 7.8e-47 190.7 104 89.4
FAN07G0685 Fragaria x ananassa HOM05D004941 ORTHO05D005624 7.8e-47 190.7 104 89.4
THA.LOC104826109 Tarenaya hassleriana HOM05D004941 ORTHO05D005624 7.8e-47 190.7 104 87.5
TWI73G0643 Tripterygium wilfordii HOM05D004941 ORTHO05D005624 7.8e-47 190.7 104 89.4
GSVIVG01029054001 Vitis vinifera HOM05D004941 ORTHO05D005624 7.8e-47 190.7 104 89.4
MSTRG.9834 Avicennia marina HOM05D004941 ORTHO05D005624 1.3e-46 189.9 104 88.5
Nn1g03138 Nelumbo nucifera HOM05D004941 ORTHO05D005624 1.7e-46 189.5 104 88.5
Potri.001G052100 Populus trichocarpa HOM05D004941 ORTHO05D005624 1.7e-46 189.5 104 89.4
SalBow2G0113 Salvia bowleyana HOM05D004941 ORTHO05D005624 1.7e-46 189.5 104 87.5
Dinv38278 Davidia involucrata HOM05D004941 ORTHO05D005624 3.0e-46 188.7 104 88.5
Gohir.A09G052900 Gossypium hirsutum HOM05D004941 ORTHO05D005624 3.0e-46 188.7 104 87.5
Gorai.006G055700 Gossypium raimondii HOM05D004941 ORTHO05D005624 3.0e-46 188.7 104 87.5
Ciclev10005408m.g Citrus clementina HOM05D004941 ORTHO05D005624 3.9e-46 188.3 104 87.5
COL.COLO4_34078 Corchorus olitorius HOM05D004941 ORTHO05D005624 3.9e-46 188.3 104 88.5
Gohir.D09G052984 Gossypium hirsutum HOM05D004941 ORTHO05D005624 3.9e-46 188.3 104 86.5
Actinidia35949 Actinidia chinensis HOM05D004941 ORTHO05D005624 5.0e-46 188.0 104 87.5
Ah.12g061340 Amaranthus hybridus HOM05D004941 ORTHO05D005624 5.0e-46 188.0 104 86.5
AUR62020272 Chenopodium quinoa HOM05D004941 ORTHO05D005624 5.0e-46 188.0 104 87.5
AUR62037730 Chenopodium quinoa HOM05D004941 ORTHO05D005624 5.0e-46 188.0 104 87.5
TAR362G1130 Trochodendron aralioides HOM05D004941 ORTHO05D005624 5.0e-46 188.0 104 89.4
CDE06G1864 Ceratophyllum demersum HOM05D004941 ORTHO05D005624 6.6e-46 187.6 104 86.5
Thecc.04G211200 Theobroma cacao HOM05D004941 ORTHO05D005624 6.6e-46 187.6 104 87.5
CiPaw.01G126200 Carya illinoinensis HOM05D004941 ORTHO05D005624 8.6e-46 187.2 104 87.5
Solyc12g098150.2 Solanum lycopersicum HOM05D004941 ORTHO05D005624 8.6e-46 187.2 104 87.5
Sopen12g032980 Solanum pennellii HOM05D004941 ORTHO05D005624 8.6e-46 187.2 104 87.5
VMungo0720G0486 Vigna mungo HOM05D004941 ORTHO05D005624 8.6e-46 187.2 104 87.5
arahy.Tifrunner.gnm1.ann1.4W8SKF Arachis hypogaea HOM05D004941 ORTHO05D005624 1.1e-45 186.8 104 87.5
Phvul.007G236700 Phaseolus vulgaris HOM05D004941 ORTHO05D005624 1.1e-45 186.8 104 88.5
arahy.Tifrunner.gnm1.ann1.9BGX48 Arachis hypogaea HOM05D004941 ORTHO05D005624 1.5e-45 186.4 104 86.5
Atru.chr4.1786 Acer truncatum HOM05D004941 ORTHO05D005624 1.9e-45 186.0 104 84.6
Duzib212G1033 Durio zibethinus HOM05D004941 ORTHO05D005624 1.9e-45 186.0 104 87.5
Glyma.20G077200 Glycine max HOM05D004941 ORTHO05D005624 1.9e-45 186.0 104 87.5
PGSC0003DMG400016870 Solanum tuberosum HOM05D004941 ORTHO05D005624 1.9e-45 186.0 104 86.5
EL10Ac2g02402 Beta vulgaris HOM05D004941 ORTHO05D005624 2.5e-45 185.7 104 86.5
Glyma.10G124800 Glycine max HOM05D004941 ORTHO05D005624 2.5e-45 185.7 104 87.5
Cfa021915 Carpinus fangiana HOM05D004941 ORTHO05D005624 4.3e-45 184.9 104 87.5
ATR0787G155 Amborella trichopoda HOM05D004941 ORTHO05D005624 5.6e-45 184.5 104 85.6
Migut.G00623 Erythranthe guttata HOM05D004941 ORTHO05D005624 5.6e-45 184.5 104 85.6
Duzib212G0897 Durio zibethinus HOM05D004941 ORTHO05D005624 7.3e-45 184.1 104 86.5
Medtr1g047250 Medicago truncatula HOM05D004941 ORTHO05D005624 7.3e-45 184.1 104 85.6
CiPaw.02G068500 Carya illinoinensis HOM05D004941 ORTHO05D005624 9.5e-45 183.7 104 86.5
Lalb_Chr03g0036651 Lupinus albus HOM05D004941 ORTHO05D005624 9.5e-45 183.7 104 85.6
Nn3g19897 Nelumbo nucifera HOM05D004941 ORTHO05D005624 9.5e-45 183.7 104 85.6
CAN.G706.24 Capsicum annuum HOM05D004941 ORTHO05D005624 1.2e-44 183.3 104 85.6
Hund25548 Selenicereus undatus HOM05D004941 ORTHO05D005624 1.2e-44 183.3 104 85.6
Lalb_Chr01g0010801 Lupinus albus HOM05D004941 ORTHO05D005624 1.6e-44 183.0 104 85.6
MBI07_g19562_MAGBIO Magnolia biondii HOM05D004941 ORTHO05D005624 1.6e-44 183.0 104 86.5
QL06p023335 Quercus lobata HOM05D004941 ORTHO05D005624 1.6e-44 183.0 104 85.6
unitig_748.g7345 Utricularia gibba HOM05D004941 ORTHO05D005624 2.1e-44 182.6 104 86.5
A10p03120 Brassica napus HOM05D004941 ORTHO05D005624 2.8e-44 182.2 104 84.6
C05p02890 Brassica napus HOM05D004941 ORTHO05D005624 2.8e-44 182.2 104 84.6
BolC5t29070H Brassica oleracea HOM05D004941 ORTHO05D005624 2.8e-44 182.2 104 84.6
BraA10t42585Z Brassica rapa HOM05D004941 ORTHO05D005624 2.8e-44 182.2 104 84.6
Lj3A584G54 Lonicera japonica HOM05D004941 ORTHO05D005624 2.8e-44 182.2 104 83.7
Aa31LG1G20190 Aethionema arabicum HOM05D004941 ORTHO05D005624 3.6e-44 181.8 104 84.6
Peaxi162Scf00817g00217 Petunia axillaris HOM05D004941 ORTHO05D005624 4.7e-44 181.4 104 84.6
Nitab4.5_0005337g0010 Nicotiana tabacum HOM05D004941 ORTHO05D005624 6.2e-44 181.0 105 82.9
HPP92_020758 Vanilla planifolia HOM05D004941 ORTHO05D005624 6.2e-44 181.0 105 81.9
BcaC07g36888 Brassica carinata HOM05D004941 ORTHO05D005624 8.0e-44 180.6 104 83.7
A08p36750 Brassica napus HOM05D004941 ORTHO05D005624 8.0e-44 180.6 104 83.7
C08p01390 Brassica napus HOM05D004941 ORTHO05D005624 8.0e-44 180.6 104 83.7
BolC8t46947H Brassica oleracea HOM05D004941 ORTHO05D005624 8.0e-44 180.6 104 83.7
BraA08t35577Z Brassica rapa HOM05D004941 ORTHO05D005624 8.0e-44 180.6 104 83.7
Carub.0001s0394 Capsella rubella HOM05D004941 ORTHO05D005624 8.0e-44 180.6 104 83.7
CARHR004070 Cardamine hirsuta HOM05D004941 ORTHO05D005624 8.0e-44 180.6 104 83.7
Thhalv10008181m.g Eutrema salsugineum HOM05D004941 ORTHO05D005624 8.0e-44 180.6 104 83.7
Sp1g03530 Schrenkiella parvula HOM05D004941 ORTHO05D005624 8.0e-44 180.6 104 83.7
Aqoxy2G03791 Aquilegia oxysepala HOM05D004941 ORTHO05D005624 1.0e-43 180.3 104 84.6
TPR.G10093 Trifolium pratense HOM05D004941 ORTHO05D005624 1.0e-43 180.3 104 82.7
Lj6g0004918 Lotus japonicus HOM05D004941 ORTHO05D005624 1.4e-43 179.9 104 83.7
MD13G1231200 Malus domestica HOM05D004941 ORTHO05D005624 1.4e-43 179.9 104 83.7
Nitab4.5_0009699g0010 Nicotiana tabacum HOM05D004941 ORTHO05D005624 1.4e-43 179.9 104 82.7
AL1G14400 Arabidopsis lyrata HOM05D004941 ORTHO05D005624 1.8e-43 179.5 104 82.7
AT1G04690 Arabidopsis thaliana HOM05D004941 ORTHO05D005624 1.8e-43 179.5 104 82.7
BcaB03g13476 Brassica carinata HOM05D004941 ORTHO05D005624 1.8e-43 179.5 104 82.7
HanXRQChr14g0435051 Helianthus annuus HOM05D004941 ORTHO05D005624 2.3e-43 179.1 104 85.6
DCAR_024319 Daucus carota HOM05D004941 ORTHO05D005624 3.1e-43 178.7 104 85.6
Psat6g047760 Pisum sativum HOM05D004941 ORTHO05D005624 3.1e-43 178.7 104 83.7
PSO170G0276 Papaver somniferum HOM05D004941 ORTHO05D005624 4.0e-43 178.3 105 83.8
PSO764G0052 Papaver somniferum HOM05D004941 ORTHO05D005624 4.0e-43 178.3 105 83.8
THA.LOC104816018 Tarenaya hassleriana HOM05D004941 ORTHO05D005624 6.8e-43 177.6 104 83.7
ECA238G2545 Erigeron canadensis HOM05D004941 ORTHO05D005624 1.5e-42 176.4 105 82.9
HanXRQChr11g0342701 Helianthus annuus HOM05D004941 ORTHO05D005624 1.5e-42 176.4 104 84.6
Lsat_1_v5_gn_2_43301 Lactuca sativa HOM05D004941 ORTHO05D005624 2.0e-42 176.0 104 84.6
Os02g0817500 Oryza sativa ssp. japonica HOM05D004941 ORTHO05D005624 4.4e-42 174.9 105 81.0
SEGI_23376 Sequoiadendron giganteum HOM05D004941 ORTHO05D005624 4.4e-42 174.9 104 82.7
CiPaw.01G126300 Carya illinoinensis HOM05D004941 ORTHO05D005624 5.8e-42 174.5 104 81.7
CSS0035383 Camellia sinensis var. sinensis HOM05D004941 ORTHO05D005624 1.3e-41 173.3 141 68.1
Zm00001eb258940 Zea mays HOM05D004941 ORTHO05D005624 1.7e-41 172.9 105 79.0
DCAR_027374 Daucus carota HOM05D004941 ORTHO05D005624 2.2e-41 172.6 104 79.8
Zm00001eb191380 Zea mays HOM05D004941 ORTHO05D005624 4.9e-41 171.4 106 77.4
vmacro15503 Vaccinium macrocarpon HOM05D004941 ORTHO05D005624 1.1e-40 170.2 131 71.0
Cc03_g07250 Coffea canephora HOM05D004941 ORTHO05D005624 3.2e-40 168.7 105 80.0
Mapoly0072s0010 Marchantia polymorpha HOM05D004941 ORTHO05D005624 4.1e-40 168.3 105 76.2
Haze_11557 Corylus avellana HOM05D004941 ORTHO05D005624 9.2e-40 167.2 94 88.3
Lsat_1_v5_gn_1_72461 Lactuca sativa HOM05D004941 ORTHO05D005624 3.5e-39 165.2 124 72.6
SMO119G0453 Selaginella moellendorffii HOM05D004941 ORTHO05D005624 2.5e-37 159.1 105 72.4
Pp3c15_3990 Physcomitrium patens HOM05D004941 ORTHO05D005624 3.7e-33 145.2 105 66.7
Pp3c9_7970 Physcomitrium patens HOM05D004941 ORTHO05D005624 4.1e-32 141.7 105 64.8
HanXRQChr12g0368351 Helianthus annuus HOM05D004941 ORTHO05D005624 5.4e-32 141.4 88 79.5
HanXRQChr12g0368381 Helianthus annuus HOM05D004941 ORTHO05D005624 7.8e-31 137.5 88 76.1
Oeu001462.1 Olea europaea HOM05D004941 ORTHO05D005624 1.3e-30 136.7 103 70.9
CBR_g12335 Chara braunii HOM05D004941 ORTHO05D005624 5.6e-29 131.3 105 62.9
unitig_32.g11683 Utricularia gibba HOM05D004941 ORTHO05D005624 2.1e-28 129.4 127 59.1
Cpa.g.c36552 Carica papaya HOM05D004941 ORTHO05D005624 2.1e-20 102.8 56 91.1
BcaC05g28675 Brassica carinata HOM05D003918 ORTHO05D004494 1.8e-19 99.8 109 56.9
Hma1.2p1_0903F.1_g235180 Hydrangea macrophylla HOM05D004941 ORTHO05D005624 2.4e-19 99.4 52 86.5
Sc04g0003020 Simmondsia chinensis HOM05D004941 ORTHO05D005624 1.2e-18 97.1 48 91.7
Cre04.g217916 Chlamydomonas reinhardtii HOM05D000352 ORTHO05D005624 9.9e-18 94.0 110 50.0
COL.COLO4_34077 Corchorus olitorius HOM05D004941 ORTHO05D005624 1.1e-13 80.5 43 86.0
Pp3s30_128 Physcomitrium patens HOM05D000352 ORTHO05D006304 3.1e-11 72.4 102 38.2
Atru.chr4.1784 Acer truncatum HOM05D004941 ORTHO05D005624 1.7e-09 66.6 39 76.9
CBR_g12488 Chara braunii HOM05D000019 ORTHO05D000002 8.4e-09 64.3 95 35.8
MCO11G017 Micromonas commoda HOM05D002663 ORTHO05D002988 1.4e-08 63.5 95 35.8
Ca_28893_v3 Cicer arietinum L. HOM05D000352 ORTHO05D005624 2.4e-08 62.8 92 41.3
Pp3s32_220 Physcomitrium patens HOM05D000352 ORTHO05D312377 5.4e-08 61.6 104 34.6
Atru.chr4.1785 Acer truncatum HOM05D004941 ORTHO05D005624 1.0e-06 57.4 27 92.6
Cfa022423 Carpinus fangiana HOM05D004941 ORTHO05D005624 6.6e-06 54.7 42 61.9


User provided reference genes

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