Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.4e-142 509.6 255 100.0
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 5.3e-94 348.2 220 82.7
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.9e-92 342.4 218 83.0
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.5e-91 340.1 218 82.6
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 3.2e-91 339.0 225 79.1
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 4.7e-50 202.2 217 59.0
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 5.2e-49 198.7 229 55.9
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 3.1e-41 172.9 147 65.3
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 2.9e-39 166.4 210 51.9
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 6.0e-37 158.7 126 69.8
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 7.8e-37 158.3 141 63.8
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 3.9e-36 156.0 128 66.4
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 3.9e-36 156.0 177 55.4
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 5.1e-36 155.6 120 69.2
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 1.1e-35 154.5 182 53.3
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 1.1e-35 154.5 182 53.3
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 1.5e-35 154.1 126 65.1
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 1.3e-34 151.0 150 58.0
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 2.8e-34 149.8 186 47.3
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 2.8e-34 149.8 187 48.7
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 2.8e-34 149.8 184 50.5
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 3.6e-34 149.4 133 62.4
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 4.8e-34 149.1 140 58.6
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 4.8e-34 149.1 187 48.1
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 4.8e-34 149.1 187 48.1
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 4.8e-34 149.1 109 70.6
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 4.8e-34 149.1 140 58.6
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 6.2e-34 148.7 140 57.9
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 1.4e-33 147.5 139 62.6
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 1.4e-33 147.5 133 62.4
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.4e-33 147.5 165 54.5
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 1.4e-33 147.5 165 54.5
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 1.4e-33 147.5 177 52.0
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 4.0e-33 146.0 223 45.7
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 5.3e-33 145.6 189 47.6
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 5.3e-33 145.6 176 50.6
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 6.9e-33 145.2 194 50.0
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 6.9e-33 145.2 186 46.8
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 6.9e-33 145.2 140 54.3
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 6.9e-33 145.2 125 64.0
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 6.9e-33 145.2 160 51.2
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 6.9e-33 145.2 185 51.4
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 6.9e-33 145.2 173 52.6
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 9.0e-33 144.8 122 64.8
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 9.0e-33 144.8 184 47.3
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 9.0e-33 144.8 136 60.3
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 9.0e-33 144.8 132 62.9
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 9.0e-33 144.8 193 46.6
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 9.0e-33 144.8 105 72.4
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 9.0e-33 144.8 178 50.0
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 1.2e-32 144.4 190 47.9
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 1.2e-32 144.4 191 47.6
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 1.2e-32 144.4 220 46.8
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 1.2e-32 144.4 186 46.8
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 1.5e-32 144.1 122 64.8
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 2.0e-32 143.7 175 50.9
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 2.6e-32 143.3 120 65.8
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 2.6e-32 143.3 194 47.4
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 3.4e-32 142.9 122 60.7
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 3.4e-32 142.9 183 47.0
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 3.4e-32 142.9 183 47.0
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 3.4e-32 142.9 170 49.4
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 3.4e-32 142.9 180 51.1
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 3.4e-32 142.9 252 43.3
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 4.4e-32 142.5 181 47.5
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 4.4e-32 142.5 170 51.8
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 5.8e-32 142.1 189 49.2
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 5.8e-32 142.1 170 51.8
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 5.8e-32 142.1 183 47.0
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 7.6e-32 141.7 140 55.0
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 7.6e-32 141.7 184 46.7
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 7.6e-32 141.7 172 49.4
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 9.9e-32 141.4 176 49.4
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 9.9e-32 141.4 173 49.7
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 9.9e-32 141.4 222 43.7
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 9.9e-32 141.4 176 51.1
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 1.3e-31 141.0 122 59.8
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 1.3e-31 141.0 183 47.0
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 1.7e-31 140.6 187 47.6
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 1.7e-31 140.6 176 50.6
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 1.7e-31 140.6 176 50.0
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 1.7e-31 140.6 133 57.9
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 1.7e-31 140.6 133 59.4
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 2.2e-31 140.2 97 71.1
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 2.2e-31 140.2 187 47.6
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 2.2e-31 140.2 186 46.8
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 2.9e-31 139.8 176 47.2
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 2.9e-31 139.8 176 47.2
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 2.9e-31 139.8 127 60.6
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.9e-31 139.8 176 52.3
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 2.9e-31 139.8 131 58.8
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 4.9e-31 139.0 122 59.8
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 4.9e-31 139.0 133 57.1
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 4.9e-31 139.0 176 47.2
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 4.9e-31 139.0 133 57.1
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 6.4e-31 138.7 147 52.4
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 6.4e-31 138.7 107 67.3
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 6.4e-31 138.7 122 62.3
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 6.4e-31 138.7 133 58.6
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 6.4e-31 138.7 122 62.3
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 6.4e-31 138.7 142 55.6
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 8.4e-31 138.3 176 51.7
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 1.1e-30 137.9 84 85.7
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 1.4e-30 137.5 125 60.0
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 1.9e-30 137.1 132 59.8
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 3.2e-30 136.3 190 46.3
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 4.2e-30 136.0 133 56.4
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 4.2e-30 136.0 190 46.3
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 9.3e-30 134.8 122 59.8
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 1.2e-29 134.4 133 53.4
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 3.5e-29 132.9 184 44.0
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 4.6e-29 132.5 208 43.3
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 1.0e-28 131.3 126 57.1
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 1.0e-28 131.3 166 48.2
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 1.3e-28 131.0 101 66.3
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 1.7e-28 130.6 103 65.0
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 2.3e-28 130.2 175 45.7
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 3.0e-28 129.8 89 71.9
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 1.1e-27 127.9 186 43.0
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 1.9e-27 127.1 202 42.1
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.9e-27 127.1 181 45.9
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 3.3e-27 126.3 157 47.8
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 1.6e-26 124.0 170 46.5
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 1.6e-26 124.0 162 50.0
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 2.1e-26 123.6 170 45.9
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.1e-26 123.6 134 53.0
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 4.8e-26 122.5 114 59.6
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 1.8e-25 120.6 91 67.0
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 2.4e-25 120.2 147 48.3
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 4.0e-25 119.4 132 53.8
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 6.9e-25 118.6 116 57.8
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 4.5e-24 115.9 101 62.4
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 5.8e-24 115.5 104 61.5
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 5.8e-24 115.5 102 61.8
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 1.3e-23 114.4 101 62.4
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 1.3e-23 114.4 132 47.0
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 1.7e-23 114.0 91 63.7
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 1.7e-23 114.0 105 58.1
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 2.2e-23 113.6 85 63.5
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 3.8e-23 112.8 92 63.0
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 8.4e-23 111.7 202 39.6
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 1.1e-22 111.3 135 50.4
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 2.4e-22 110.2 101 61.4
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 5.4e-22 109.0 145 48.3
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 2.7e-21 106.7 101 56.4
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 3.0e-20 103.2 93 57.0
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 5.1e-20 102.4 101 55.4
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 2.1e-18 97.1 69 69.6
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 2.1e-18 97.1 166 36.7
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 3.8e-15 86.3 71 54.9
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.4e-14 84.3 115 40.9
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 2.5e-14 83.6 52 82.7
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.1e-11 74.7 159 35.2
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 1.5e-11 74.3 118 41.5
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 6.3e-10 68.9 74 44.6
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 6.3e-10 68.9 100 46.0
Hma1.2p1_0872F.1_g231180 Hydrangea macrophylla HOM05D004281 ORTHO05D004839 1.1e-09 68.2 167 39.5
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 2.4e-09 67.0 45 73.3
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 2.2e-07 60.5 69 46.4
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 2.9e-07 60.1 45 62.2
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 3.8e-07 59.7 101 41.6
Cc05_g01010 Coffea canephora HOM05D004281 ORTHO05D004839 7.2e-06 55.5 32 87.5


User provided reference genes

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