Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034555 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 3.7e-98 362.1 264 100.0
Actinidia40362 Actinidia chinensis HOM05D001765 ORTHO05D005876 5.2e-76 288.5 194 84.5
vmacro08062 Vaccinium macrocarpon HOM05D001765 ORTHO05D005876 1.7e-74 283.5 269 82.5
Rhsim04G0234200 Rhododendron simsii HOM05D001765 ORTHO05D005876 1.4e-73 280.4 268 83.6
CSS0002630 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 5.6e-70 268.5 181 83.4
MBI19_g07244_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 8.0e-69 264.6 202 80.2
Cpa.g.sc9.87 Carica papaya HOM05D001765 ORTHO05D005876 3.1e-68 262.7 265 78.1
Cc03_g00980 Coffea canephora HOM05D001765 ORTHO05D005876 7.5e-67 258.1 198 81.8
Lj6P689T37 Lonicera japonica HOM05D001765 ORTHO05D005876 9.8e-67 257.7 199 77.9
Prupe.1G073200 Prunus persica HOM05D001765 ORTHO05D005876 1.7e-66 256.9 196 81.1
Dinv44303 Davidia involucrata HOM05D001765 ORTHO05D005876 2.2e-66 256.5 151 91.4
Hma1.2p1_0078F.1_g040010 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 6.4e-66 255.0 147 93.2
TAR633G2429 Trochodendron aralioides HOM05D001765 ORTHO05D005876 6.4e-66 255.0 197 79.7
TAR365G0409 Trochodendron aralioides HOM05D001765 ORTHO05D005876 8.3e-66 254.6 195 82.1
Nitab4.5_0000276g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.1e-65 254.2 195 77.9
MD16G1157200 Malus domestica HOM05D001765 ORTHO05D005876 1.9e-65 253.4 184 76.1
Nitab4.5_0000456g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.9e-65 253.4 195 76.9
Peaxi162Scf00065g00002 Petunia axillaris HOM05D001765 ORTHO05D005876 1.9e-65 253.4 196 79.1
MD13G1156300 Malus domestica HOM05D001765 ORTHO05D005876 3.2e-65 252.7 194 80.9
TWI09G0718 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 3.2e-65 252.7 191 78.0
Atru.chr4.3029 Acer truncatum HOM05D001765 ORTHO05D005876 5.4e-65 251.9 265 77.4
FvH4_4g19461 Fragaria vesca HOM05D001765 ORTHO05D005876 9.2e-65 251.1 196 80.1
CiPaw.01G139800 Carya illinoinensis HOM05D001765 ORTHO05D005876 2.7e-64 249.6 192 76.0
Sopen01g026230 Solanum pennellii HOM05D001765 ORTHO05D005876 4.6e-64 248.8 198 74.7
Solyc01g060030.3 Solanum lycopersicum HOM05D001765 ORTHO05D005876 2.3e-63 246.5 198 74.2
Prupe.1G122100 Prunus persica HOM05D001765 ORTHO05D005876 3.0e-63 246.1 262 78.6
Sc13g0006420 Simmondsia chinensis HOM05D001765 ORTHO05D005876 3.0e-63 246.1 185 75.7
CAN.G874.72 Capsicum annuum HOM05D001765 ORTHO05D005876 5.0e-63 245.4 197 76.6
Nitab4.5_0004323g0040 Nicotiana tabacum HOM05D001765 ORTHO05D005876 8.6e-63 244.6 193 76.2
CiPaw.02G075900 Carya illinoinensis HOM05D001765 ORTHO05D005876 1.1e-62 244.2 264 78.0
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 1.1e-62 244.2 192 79.7
Hma1.2p1_0013F.1_g008730 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 1.9e-62 243.4 200 78.0
COL.COLO4_11257 Corchorus olitorius HOM05D001765 ORTHO05D005876 2.5e-62 243.0 200 73.5
FAN07G0091 Fragaria x ananassa HOM05D001765 ORTHO05D005876 2.5e-62 243.0 196 78.1
unitig_749.g13366 Utricularia gibba HOM05D001765 ORTHO05D005876 4.3e-62 242.3 149 87.2
Nn4g25612 Nelumbo nucifera HOM05D001765 ORTHO05D005876 9.5e-62 241.1 146 89.0
Ca_21450_v3 Cicer arietinum L. HOM05D001765 ORTHO05D005876 1.2e-61 240.7 197 72.1
DCAR_002506 Daucus carota HOM05D001765 ORTHO05D005876 1.2e-61 240.7 151 86.8
CDE12G0657 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 1.6e-61 240.4 149 87.9
Aqoxy1G02157 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 2.1e-61 240.0 149 85.9
Nitab4.5_0010629g0030 Nicotiana tabacum HOM05D001765 ORTHO05D005876 2.1e-61 240.0 267 75.7
QL06p011625 Quercus lobata HOM05D001765 ORTHO05D005876 3.6e-61 239.2 149 86.6
Ciclev10005673m.g Citrus clementina HOM05D001765 ORTHO05D005876 4.7e-61 238.8 149 85.9
Oeu063485.1 Olea europaea HOM05D001765 ORTHO05D005876 4.7e-61 238.8 190 74.7
Thecc.04G297600 Theobroma cacao HOM05D001765 ORTHO05D005876 6.2e-61 238.4 264 79.9
Duzib052G0074 Durio zibethinus HOM05D001765 ORTHO05D005876 8.1e-61 238.0 196 78.6
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 1.4e-60 237.3 201 71.6
Oeu001465.1 Olea europaea HOM05D001765 ORTHO05D005876 1.4e-60 237.3 149 85.2
Gohir.A10G171300 Gossypium hirsutum HOM05D001765 ORTHO05D005876 1.8e-60 236.9 264 76.9
Gorai.006G079200 Gossypium raimondii HOM05D001765 ORTHO05D005876 1.8e-60 236.9 192 79.7
Nn3g21679 Nelumbo nucifera HOM05D001765 ORTHO05D005876 3.1e-60 236.1 263 73.8
TWI73G0761 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 5.2e-60 235.3 146 87.7
Aqoxy5G01535 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 6.8e-60 235.0 149 84.6
MSTRG.21776 Avicennia marina HOM05D001765 ORTHO05D005876 6.8e-60 235.0 149 85.2
CANSAT78G1829 Cannabis sativa HOM05D001765 ORTHO05D005876 4.4e-59 232.3 149 83.2
Potri.010G142400 Populus trichocarpa HOM05D001765 ORTHO05D005876 4.4e-59 232.3 192 79.2
ATR0706G059 Amborella trichopoda HOM05D001765 ORTHO05D005876 7.5e-59 231.5 147 86.4
Migut.N00048 Erythranthe guttata HOM05D001765 ORTHO05D005876 7.5e-59 231.5 151 83.4
Gohir.A09G065500 Gossypium hirsutum HOM05D001765 ORTHO05D005876 7.5e-59 231.5 146 88.4
ClCG06G004640 Citrullus lanatus HOM05D001765 ORTHO05D005876 9.8e-59 231.1 145 84.8
Haze_01276 Corylus avellana HOM05D001765 ORTHO05D005876 1.7e-58 230.3 263 76.0
Gohir.D09G064400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 1.7e-58 230.3 187 77.5
Ah.04g162900 Amaranthus hybridus HOM05D001765 ORTHO05D005876 3.7e-58 229.2 149 83.9
PGR031G3587 Punica granatum HOM05D001765 ORTHO05D005876 4.9e-58 228.8 187 79.7
Sed0022335 Sechium edule HOM05D001765 ORTHO05D005876 6.4e-58 228.4 145 84.1
Lsat_1_v5_gn_6_116901 Lactuca sativa HOM05D001765 ORTHO05D005876 8.3e-58 228.0 149 83.9
Gorai.011G199400 Gossypium raimondii HOM05D001765 ORTHO05D005876 1.1e-57 227.6 264 78.0
Duzib151G0385 Durio zibethinus HOM05D001765 ORTHO05D005876 1.4e-57 227.3 146 85.6
SGA_v2.0_scaffold119G32663 Striga asiatica HOM05D001765 ORTHO05D005876 1.4e-57 227.3 150 84.7
HanXRQChr05g0145931 Helianthus annuus HOM05D001765 ORTHO05D005876 1.9e-57 226.9 146 85.6
EL10Ac4g08905 Beta vulgaris HOM05D001765 ORTHO05D005876 2.4e-57 226.5 149 83.2
PSO210G5285 Papaver somniferum HOM05D001765 ORTHO05D005876 2.4e-57 226.5 185 72.4
AUR62037504 Chenopodium quinoa HOM05D001765 ORTHO05D005876 3.2e-57 226.1 149 83.2
Lalb_Chr13g0298421 Lupinus albus HOM05D001765 ORTHO05D005876 3.2e-57 226.1 152 82.9
ECA246G2338 Erigeron canadensis HOM05D001765 ORTHO05D005876 4.1e-57 225.7 149 83.9
Glyma.07G241300 Glycine max HOM05D001765 ORTHO05D005876 5.4e-57 225.3 151 82.1
SEGI_21194 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 7.1e-57 224.9 146 81.5
SEGI_31674 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 7.1e-57 224.9 146 81.5
Aqoxy5G02976 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 1.6e-56 223.8 149 81.9
VMungo0647G0513 Vigna mungo HOM05D000091 ORTHO05D005533 2.1e-56 223.4 144 84.7
Glyma.17G032500 Glycine max HOM05D001765 ORTHO05D005876 2.7e-56 223.0 151 81.5
Manes.03G202700 Manihot esculenta HOM05D001765 ORTHO05D005876 2.7e-56 223.0 149 83.2
Gohir.D10G178400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 3.5e-56 222.6 264 77.3
Potri.008G107100 Populus trichocarpa HOM05D001765 ORTHO05D005876 4.6e-56 222.2 192 77.1
PSO761G0153 Papaver somniferum HOM05D001765 ORTHO05D005876 7.8e-56 221.5 183 71.6
Sabra08G0081000 Salix brachista HOM05D001765 ORTHO05D005876 1.0e-55 221.1 145 83.4
TPR.G16856 Trifolium pratense HOM05D001765 ORTHO05D005876 1.0e-55 221.1 143 83.9
Lalb_Chr07g0182091 Lupinus albus HOM05D001765 ORTHO05D005876 1.7e-55 220.3 147 81.6
VMungo1215G2482 Vigna mungo HOM05D001765 ORTHO05D005876 3.0e-55 219.5 143 83.2
Sabra10G0110100 Salix brachista HOM05D001765 ORTHO05D005876 3.9e-55 219.2 196 73.5
THA.LOC104802705 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 5.1e-55 218.8 151 82.1
CDE01G0626 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 6.6e-55 218.4 149 81.2
Eucgr.A00351 Eucalyptus grandis HOM05D001765 ORTHO05D005876 8.6e-55 218.0 148 77.7
Phvul.008G245800 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 1.1e-54 217.6 152 80.9
Phvul.009G074533 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 1.1e-54 217.6 152 80.9
CsaV3_2G015100 Cucumis sativus L. HOM05D001765 ORTHO05D005876 1.9e-54 216.9 134 88.8
Psat4g024600 Pisum sativum HOM05D001765 ORTHO05D005876 1.9e-54 216.9 188 69.7
THA.LOC104818892 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 2.5e-54 216.5 151 82.1
MELO3C023334.2 Cucumis melo HOM05D001765 ORTHO05D005876 3.3e-54 216.1 133 88.7
Phvul.003G112500 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 2.8e-53 213.0 198 70.7
AUR62004747 Chenopodium quinoa HOM05D001765 ORTHO05D005876 3.6e-53 212.6 138 85.5
Ciclev10016311m.g Citrus clementina HOM05D001765 ORTHO05D005876 3.6e-53 212.6 133 86.5
arahy.Tifrunner.gnm1.ann1.03CYAA Arachis hypogaea HOM05D001765 ORTHO05D005876 6.2e-53 211.8 133 88.0
RcHm_v2.0_Chr4g0424571 Rosa chinensis HOM05D001765 ORTHO05D005876 8.9e-52 208.0 196 73.0
Aa31LG11G7990 Aethionema arabicum HOM05D001765 ORTHO05D005876 2.6e-51 206.5 184 70.7
AT5G49400 Arabidopsis thaliana HOM05D001765 ORTHO05D005876 5.8e-51 205.3 148 79.1
Thhalv10004753m.g Eutrema salsugineum HOM05D001765 ORTHO05D005876 5.8e-51 205.3 145 82.1
A06p38370 Brassica napus HOM05D001765 ORTHO05D005876 7.6e-51 204.9 150 78.7
BolC7t44518H Brassica oleracea HOM05D001765 ORTHO05D005876 7.6e-51 204.9 150 78.7
BraA06t26751Z Brassica rapa HOM05D001765 ORTHO05D005876 7.6e-51 204.9 150 78.7
Carub.0008s0928 Capsella rubella HOM05D001765 ORTHO05D005876 7.6e-51 204.9 148 78.4
Sp2g19740 Schrenkiella parvula HOM05D001765 ORTHO05D005876 1.3e-50 204.1 147 79.6
SpUn0021_0110 Schrenkiella parvula HOM05D001765 ORTHO05D005876 1.3e-50 204.1 147 79.6
Sed0021764 Sechium edule HOM05D001765 ORTHO05D005876 2.9e-50 203.0 130 86.2
BcaNung02601 Brassica carinata HOM05D001765 ORTHO05D005876 3.7e-50 202.6 150 78.0
C07p39890 Brassica napus HOM05D001765 ORTHO05D005876 3.7e-50 202.6 150 78.0
BcaC06g30699 Brassica carinata HOM05D001765 ORTHO05D005876 4.9e-50 202.2 150 77.3
CARHR182130 Cardamine hirsuta HOM05D001765 ORTHO05D005876 4.9e-50 202.2 141 81.6
C02p57300 Brassica napus HOM05D001765 ORTHO05D003527 8.4e-50 201.4 195 68.7
BolC2t11799H Brassica oleracea HOM05D001765 ORTHO05D003527 8.4e-50 201.4 195 68.7
BcaC03g17719 Brassica carinata HOM05D001765 ORTHO05D005876 1.1e-49 201.1 151 76.2
Zm00001eb328920 Zea mays HOM05D001765 ORTHO05D005876 4.1e-49 199.1 138 76.8
AL8G23110 Arabidopsis lyrata HOM05D001765 ORTHO05D005876 5.4e-49 198.7 150 76.7
A02p38130 Brassica napus HOM05D001765 ORTHO05D003527 9.2e-49 198.0 198 67.2
Zm00001eb109890 Zea mays HOM05D001765 ORTHO05D005876 4.6e-48 195.7 138 75.4
Pp3c14_13970 Physcomitrium patens HOM05D001765 ORTHO05D005876 6.0e-48 195.3 138 79.0
Lj4g0023600 Lotus japonicus HOM05D001765 ORTHO05D005876 1.7e-47 193.7 195 71.3
Mapoly0023s0038 Marchantia polymorpha HOM05D001765 ORTHO05D005876 1.7e-47 193.7 142 76.8
Os11g0199600 Oryza sativa ssp. japonica HOM05D001765 ORTHO05D005876 6.6e-47 191.8 146 74.0
BraA02t08788Z Brassica rapa HOM05D001765 ORTHO05D005876 1.6e-45 187.2 194 67.0
AagrBONN_evm.TU.Sc2ySwM_362.810 Anthoceros agrestis HOM05D001765 ORTHO05D005876 1.4e-44 184.1 139 74.8
Nitab4.5_0004323g0070 Nicotiana tabacum HOM05D001765 ORTHO05D005876 5.2e-44 182.2 117 86.3
MBI19_g17409_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 1.5e-43 180.6 202 64.9
BcaB07g34154 Brassica carinata HOM05D001765 ORTHO05D005876 1.7e-42 177.2 133 76.7
Manes.15G005450 Manihot esculenta HOM05D001765 ORTHO05D005876 2.9e-42 176.4 127 74.0
Mapoly0171s0012 Marchantia polymorpha HOM05D001765 ORTHO05D005876 7.8e-40 168.3 137 68.6
Pp3c14_17690 Physcomitrium patens HOM05D001765 ORTHO05D005876 1.0e-39 167.9 138 66.7
AagrBONN_evm.TU.Sc2ySwM_228.5656 Anthoceros agrestis HOM05D001765 ORTHO05D005876 2.4e-36 156.8 121 73.6
CBR_g53494 Chara braunii HOM05D000188 ORTHO05D005876 6.4e-34 148.7 137 65.7
SMO340G0272 Selaginella moellendorffii HOM05D001765 ORTHO05D005876 1.6e-32 144.1 115 67.0
Zm00001eb091100 Zea mays HOM05D001765 ORTHO05D005876 2.8e-29 133.3 119 63.0
Zm00001eb276930 Zea mays HOM05D001765 ORTHO05D005876 1.1e-28 131.3 100 73.0
GSVIVG01035017001 Vitis vinifera HOM05D001765 ORTHO05D005876 1.2e-27 127.9 87 88.5
CAN.G201.7 Capsicum annuum HOM05D001765 ORTHO05D005876 2.6e-27 126.7 196 51.0
ATR1159G054 Amborella trichopoda HOM05D001765 ORTHO05D005876 1.2e-24 117.9 82 69.5
Lsat_1_v5_gn_6_18261 Lactuca sativa HOM05D001765 ORTHO05D005876 2.1e-24 117.1 136 52.9
SEGI_08255 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 2.1e-24 117.1 116 63.8
HanXRQChr13g0395311 Helianthus annuus HOM05D001765 ORTHO05D005876 1.3e-23 114.4 108 60.2
ECA233G0063 Erigeron canadensis HOM05D001765 ORTHO05D005876 3.3e-22 109.8 100 64.0
Medtr1g032030 Medicago truncatula HOM05D001765 ORTHO05D005876 3.7e-21 106.3 78 79.5
Medtr1g032370 Medicago truncatula HOM05D001765 ORTHO05D005876 3.7e-21 106.3 78 79.5
Zm00001eb408400 Zea mays HOM05D001765 ORTHO05D005876 7.6e-19 98.6 84 70.2
CAN.G197.3 Capsicum annuum HOM05D001765 ORTHO05D005876 6.5e-18 95.5 75 73.3
ATR1159G071 Amborella trichopoda HOM05D001765 ORTHO05D005876 8.7e-15 85.1 66 86.4
ATR1159G066 Amborella trichopoda HOM05D001765 ORTHO05D005876 9.6e-14 81.6 64 82.8
Dinv15195 Davidia involucrata HOM05D002174 ORTHO05D005447 9.3e-09 65.1 60 56.7
Cre12.g529200 Chlamydomonas reinhardtii HOM05D001765 ORTHO05D005876 2.3e-07 60.5 61 44.3


User provided reference genes

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