Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034529 Camellia sinensis var. sinensis HOM05D003479 ORTHO05D004659 2.8e-88 328.6 162 100.0
Rhsim01G0001400 Rhododendron simsii HOM05D003479 ORTHO05D004659 6.7e-66 254.2 169 76.9
Actinidia06417 Actinidia chinensis HOM05D003479 ORTHO05D004659 7.4e-65 250.8 175 74.3
Dinv12068 Davidia involucrata HOM05D003479 ORTHO05D004659 5.8e-62 241.1 181 71.3
Lju2566C1G2 Lonicera japonica HOM05D003479 ORTHO05D004659 3.5e-59 231.9 174 69.5
Cfa004931 Carpinus fangiana HOM05D003479 ORTHO05D004659 1.6e-56 223.0 180 66.7
GSVIVG01028271001 Vitis vinifera HOM05D003479 ORTHO05D004659 1.6e-56 223.0 180 65.6
Prupe.3G000300 Prunus persica HOM05D003479 ORTHO05D004659 2.1e-56 222.6 180 66.7
CiPaw.07G128000 Carya illinoinensis HOM05D003479 ORTHO05D004659 1.8e-55 219.5 180 67.2
arahy.Tifrunner.gnm1.ann1.RIE5PZ Arachis hypogaea HOM05D003479 ORTHO05D004659 2.6e-54 215.7 180 64.4
Glyma.20G089300 Glycine max HOM05D003479 ORTHO05D004659 3.4e-54 215.3 180 64.4
arahy.Tifrunner.gnm1.ann1.37N44H Arachis hypogaea HOM05D003479 ORTHO05D004659 7.6e-54 214.2 180 63.9
Psat6g157360 Pisum sativum HOM05D003479 ORTHO05D004659 1.0e-53 213.8 180 62.8
Cc01_g21710 Coffea canephora HOM05D003479 ORTHO05D004659 2.9e-53 212.2 182 64.8
Lj5g0020342 Lotus japonicus HOM05D003479 ORTHO05D004659 2.9e-53 212.2 182 63.7
Medtr1g085300 Medicago truncatula HOM05D003479 ORTHO05D004659 2.9e-53 212.2 181 63.0
FAN23G2105 Fragaria x ananassa HOM05D003479 ORTHO05D004659 5.0e-53 211.5 165 68.5
RcHm_v2.0_Chr3g0485491 Rosa chinensis HOM05D003479 ORTHO05D004659 5.0e-53 211.5 181 64.6
Ciclev10018541m.g Citrus clementina HOM05D003479 ORTHO05D004659 6.5e-53 211.1 180 63.9
FAN28G1829 Fragaria x ananassa HOM05D003479 ORTHO05D004659 6.5e-53 211.1 165 69.1
Ca_10221_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 1.4e-52 209.9 180 63.3
Glyma.03G226200 Glycine max HOM05D003479 ORTHO05D004659 1.9e-52 209.5 176 63.1
MD17G1285800 Malus domestica HOM05D003479 ORTHO05D004659 2.5e-52 209.1 180 62.8
ECA247G3194 Erigeron canadensis HOM05D003479 ORTHO05D004659 4.2e-52 208.4 168 66.1
Gohir.D11G107800 Gossypium hirsutum HOM05D003479 ORTHO05D004659 4.2e-52 208.4 181 64.1
Phvul.001G220000 Phaseolus vulgaris HOM05D003479 ORTHO05D004659 4.2e-52 208.4 176 63.1
Thecc.01G328500 Theobroma cacao HOM05D003479 ORTHO05D004659 5.5e-52 208.0 181 63.5
Gohir.A11G103400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 1.2e-51 206.8 181 63.5
Manes.01G236800 Manihot esculenta HOM05D003479 ORTHO05D004659 1.2e-51 206.8 178 61.8
Gorai.007G115700 Gossypium raimondii HOM05D003479 ORTHO05D004659 1.6e-51 206.5 181 63.0
CsaV3_6G000310 Cucumis sativus L. HOM05D003479 ORTHO05D004659 2.1e-51 206.1 181 63.0
Gohir.D08G143700 Gossypium hirsutum HOM05D003479 ORTHO05D004659 2.1e-51 206.1 186 61.3
SGA_v2.0_scaffold80G25672 Striga asiatica HOM05D003479 ORTHO05D004659 2.1e-51 206.1 171 64.3
Gorai.004G148300 Gossypium raimondii HOM05D003479 ORTHO05D004659 2.7e-51 205.7 186 60.8
Nitab4.5_0002103g0090 Nicotiana tabacum HOM05D003479 ORTHO05D004659 2.7e-51 205.7 177 62.7
Lalb_Chr18g0046291 Lupinus albus HOM05D003479 ORTHO05D004659 7.9e-51 204.1 180 61.7
Sopen01g030540 Solanum pennellii HOM05D003479 ORTHO05D004659 7.9e-51 204.1 177 62.7
Gohir.A08G122400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 1.0e-50 203.8 178 62.9
Solyc01g068590.4 Solanum lycopersicum HOM05D003479 ORTHO05D004659 1.0e-50 203.8 177 62.7
Glyma.19G223200 Glycine max HOM05D003479 ORTHO05D004659 1.3e-50 203.4 176 62.5
Lalb_Chr04g0260231 Lupinus albus HOM05D003479 ORTHO05D004659 3.0e-50 202.2 180 61.1
Oeu052594.2 Olea europaea HOM05D003479 ORTHO05D004659 3.0e-50 202.2 176 62.5
QL09p037594 Quercus lobata HOM05D003479 ORTHO05D004659 3.0e-50 202.2 179 59.2
HanXRQChr15g0464511 Helianthus annuus HOM05D003479 ORTHO05D004659 3.9e-50 201.8 168 63.7
MELO3C021223.2 Cucumis melo HOM05D003479 ORTHO05D004659 5.1e-50 201.4 181 60.8
FvH4_1g26030 Fragaria vesca HOM05D003479 ORTHO05D004659 5.1e-50 201.4 180 62.8
Medtr7g111030 Medicago truncatula HOM05D003479 ORTHO05D004659 5.1e-50 201.4 180 61.1
Haze_05171 Corylus avellana HOM05D003479 ORTHO05D004659 6.7e-50 201.1 168 65.5
Potri.014G109900 Populus trichocarpa HOM05D003479 ORTHO05D004659 6.7e-50 201.1 179 61.5
Atru.chr5.824 Acer truncatum HOM05D003479 ORTHO05D004659 2.5e-49 199.1 179 62.0
Sabra14G0081100 Salix brachista HOM05D003479 ORTHO05D004659 4.3e-49 198.4 179 59.8
TAR636G1704 Trochodendron aralioides HOM05D003479 ORTHO05D004659 4.3e-49 198.4 179 62.6
CANSAT25G3435 Cannabis sativa HOM05D003479 ORTHO05D004659 5.7e-49 198.0 181 60.2
FAN26G2262 Fragaria x ananassa HOM05D003479 ORTHO05D004659 7.4e-49 197.6 180 61.7
Potri.002G184400 Populus trichocarpa HOM05D003479 ORTHO05D004659 7.4e-49 197.6 180 61.1
TWI14G0833 Tripterygium wilfordii HOM05D003479 ORTHO05D004659 7.4e-49 197.6 178 62.4
Migut.D00003 Erythranthe guttata HOM05D003479 ORTHO05D004659 1.3e-48 196.8 174 62.6
Gohir.A08G035200 Gossypium hirsutum HOM05D003479 ORTHO05D004659 1.3e-48 196.8 180 60.0
Cpa.g.sc57.54 Carica papaya HOM05D003479 ORTHO05D004659 2.2e-48 196.1 180 59.4
Gorai.004G044600 Gossypium raimondii HOM05D003479 ORTHO05D004659 4.8e-48 194.9 180 60.0
Lsat_1_v5_gn_9_7140 Lactuca sativa HOM05D003479 ORTHO05D004659 6.3e-48 194.5 172 61.6
MBI18_g03887_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 6.3e-48 194.5 182 57.1
Gohir.D08G045832 Gossypium hirsutum HOM05D003479 ORTHO05D004659 8.2e-48 194.1 180 60.0
Peaxi162Scf00309g00510 Petunia axillaris HOM05D003479 ORTHO05D004659 1.8e-47 193.0 195 56.9
Sc05g0000020 Simmondsia chinensis HOM05D003479 ORTHO05D004659 3.1e-47 192.2 178 60.7
Duzib138G1436 Durio zibethinus HOM05D003479 ORTHO05D004659 4.1e-47 191.8 173 62.4
Eucgr.K00546 Eucalyptus grandis HOM05D003479 ORTHO05D004659 6.9e-47 191.0 176 58.5
Ah.02g112690 Amaranthus hybridus HOM05D003479 ORTHO05D004659 1.2e-46 190.3 179 60.9
Aqoxy5G02886 Aquilegia oxysepala HOM05D003479 ORTHO05D004659 1.3e-45 186.8 187 57.2
Aa31LG10G15990 Aethionema arabicum HOM05D003479 ORTHO05D004659 1.7e-45 186.4 175 58.3
Ca_09257_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 3.8e-45 185.3 171 59.6
DCAR_018236 Daucus carota HOM05D003479 ORTHO05D004659 3.8e-45 185.3 167 59.9
Psat3g015760 Pisum sativum HOM05D003479 ORTHO05D004659 5.0e-45 184.9 171 58.5
EL10As5g23623 Beta vulgaris HOM05D003479 ORTHO05D004659 8.5e-45 184.1 179 59.2
CARHR172360 Cardamine hirsuta HOM05D003479 ORTHO05D004659 4.2e-44 181.8 175 59.4
Eucgr.K00763 Eucalyptus grandis HOM05D003479 ORTHO05D004659 4.2e-44 181.8 176 56.8
THA.LOC104817410 Tarenaya hassleriana HOM05D003479 ORTHO05D004659 7.2e-44 181.0 178 57.3
Thhalv10005753m.g Eutrema salsugineum HOM05D003479 ORTHO05D004659 9.4e-44 180.6 175 57.1
AL5G44630 Arabidopsis lyrata HOM05D003479 ORTHO05D004659 2.1e-43 179.5 175 58.9
Sp5g01350 Schrenkiella parvula HOM05D003479 ORTHO05D004659 2.7e-43 179.1 175 57.1
THA.LOC104802111 Tarenaya hassleriana HOM05D003479 ORTHO05D004659 2.7e-43 179.1 173 55.5
Carub.0005s2876 Capsella rubella HOM05D003479 ORTHO05D004659 1.8e-42 176.4 177 56.5
AT3G62010 Arabidopsis thaliana HOM05D003479 ORTHO05D004659 5.1e-42 174.9 175 57.7
BcaC07g40697 Brassica carinata HOM05D003479 ORTHO05D004659 8.8e-42 174.1 177 54.8
PSO170G1939 Papaver somniferum HOM05D003479 ORTHO05D004659 8.8e-42 174.1 178 56.7
PSO357G0518 Papaver somniferum HOM05D003479 ORTHO05D004659 1.5e-41 173.3 178 56.7
A09p54080 Brassica napus HOM05D003479 ORTHO05D004659 3.3e-41 172.2 176 56.8
BraA09t40821Z Brassica rapa HOM05D003479 ORTHO05D004659 3.3e-41 172.2 176 56.8
FAN23G1814 Fragaria x ananassa HOM05D003479 ORTHO05D004659 5.7e-41 171.4 103 80.6
BolC8t51274H Brassica oleracea HOM05D003479 ORTHO05D004659 7.4e-41 171.0 178 55.6
Os03g0586700 Oryza sativa ssp. japonica HOM05D003479 ORTHO05D004659 7.4e-41 171.0 179 54.2
CDE11G0667 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 9.7e-41 170.6 181 52.5
C08p36970 Brassica napus HOM05D003479 ORTHO05D004659 2.2e-40 169.5 178 54.5
Sed0003575 Sechium edule HOM05D003479 ORTHO05D019150 1.1e-39 167.2 161 56.5
TPR.G3092 Trifolium pratense HOM05D003479 ORTHO05D004659 1.8e-39 166.4 153 62.1
Zm00001eb049240 Zea mays HOM05D003479 ORTHO05D004659 1.2e-38 163.7 183 52.5
Hund11617 Selenicereus undatus HOM05D003479 ORTHO05D004659 3.4e-38 162.2 206 48.1
HPP92_010564 Vanilla planifolia HOM05D003479 ORTHO05D004659 4.5e-38 161.8 170 53.5
ATR0693G109 Amborella trichopoda HOM05D003479 ORTHO05D004659 5.9e-38 161.4 188 49.5
FAN19G1496 Fragaria x ananassa HOM05D003479 ORTHO05D004659 7.7e-38 161.0 119 70.6
AagrBONN_evm.TU.Sc2ySwM_344.258 Anthoceros agrestis HOM05D003479 ORTHO05D004659 3.8e-37 158.7 192 48.4
unitig_578.g16646 Utricularia gibba HOM05D003479 ORTHO05D004659 1.6e-35 153.3 158 53.8
Pp3c5_15420 Physcomitrium patens HOM05D003479 ORTHO05D004659 6.1e-35 151.4 184 45.7
Gohir.D08G045766 Gossypium hirsutum HOM05D003479 ORTHO05D004659 1.8e-34 149.8 158 54.4
Mapoly0022s0091 Marchantia polymorpha HOM05D003479 ORTHO05D004659 1.1e-33 147.1 184 45.1
Pp3c25_5940 Physcomitrium patens HOM05D003479 ORTHO05D004659 4.4e-33 145.2 188 45.2
SMO367G0831 Selaginella moellendorffii HOM05D003479 ORTHO05D004659 5.7e-33 144.8 174 48.3
CiPaw.08G080000 Carya illinoinensis HOM05D003479 ORTHO05D004659 2.2e-32 142.9 142 57.7
vmacro02352 Vaccinium macrocarpon HOM05D003479 ORTHO05D004659 3.7e-32 142.1 186 45.7
MD09G1291900 Malus domestica HOM05D003479 ORTHO05D004659 6.3e-32 141.4 144 56.2
AUR62011690 Chenopodium quinoa HOM05D003479 ORTHO05D004659 8.5e-29 131.0 140 55.0
Gohir.A11G116300 Gossypium hirsutum HOM05D003479 ORTHO05D004659 8.5e-29 131.0 191 42.9
Nitab4.5_0001628g0060 Nicotiana tabacum HOM05D003479 ORTHO05D004659 8.5e-29 131.0 137 56.2
DCAR_012290 Daucus carota HOM05D003479 ORTHO05D004659 2.5e-28 129.4 152 48.0
AUR62024549 Chenopodium quinoa HOM05D003479 ORTHO05D004659 2.7e-27 125.9 134 55.2
VMungo1383G0820 Vigna mungo HOM05D003479 ORTHO05D004659 3.6e-27 125.6 131 56.5
Nn4g25261 Nelumbo nucifera HOM05D003479 ORTHO05D004659 6.7e-26 121.3 137 51.1
HPP92_010572 Vanilla planifolia HOM05D003479 ORTHO05D004659 1.6e-22 110.2 76 67.1
FAN20G0117 Fragaria x ananassa HOM05D003479 ORTHO05D019150 7.7e-22 107.8 130 51.5
COL.COLO4_23088 Corchorus olitorius HOM05D003479 ORTHO05D004659 9.4e-20 100.9 97 61.9
FAN18G2819 Fragaria x ananassa HOM05D003479 ORTHO05D019150 7.5e-17 91.3 71 69.0
FvH4_5g36090 Fragaria vesca HOM05D003479 ORTHO05D019150 1.3e-16 90.5 71 69.0
FAN08G3605 Fragaria x ananassa HOM05D003479 ORTHO05D019150 4.8e-16 88.6 71 67.6
FAN07G2883 Fragaria x ananassa HOM05D003479 ORTHO05D019150 2.4e-15 86.3 121 50.4
FAN21G3631 Fragaria x ananassa HOM05D003479 ORTHO05D019150 7.0e-15 84.7 79 59.5
FAN07G2139 Fragaria x ananassa HOM05D003479 ORTHO05D019150 4.5e-14 82.0 72 62.5
SEGI_06113 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 1.3e-13 80.5 93 49.5
CDE05G2601 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 2.9e-13 79.3 94 48.9


User provided reference genes

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