Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034524 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 6.7e-142 507.3 247 100.0
Cpa.g.sc58.22 Carica papaya HOM05D004338 ORTHO05D005205 2.6e-21 106.7 82 72.0
Cc00_g20710 Coffea canephora HOM05D004338 ORTHO05D005205 3.4e-21 106.3 82 70.7
Dinv14075 Davidia involucrata HOM05D004338 ORTHO05D005205 4.5e-21 105.9 82 72.0
TWI09G1436 Tripterygium wilfordii HOM05D004338 ORTHO05D005205 4.5e-21 105.9 82 70.7
Gorai.011G170600 Gossypium raimondii HOM05D004338 ORTHO05D005205 5.8e-21 105.5 80 70.0
MD13G1204000 Malus domestica HOM05D004338 ORTHO05D005205 5.8e-21 105.5 84 70.2
Potri.008G160700 Populus trichocarpa HOM05D004338 ORTHO05D005205 5.8e-21 105.5 82 72.0
Sabra08G0122600 Salix brachista HOM05D004338 ORTHO05D005205 5.8e-21 105.5 82 72.0
RcHm_v2.0_Chr4g0389551 Rosa chinensis HOM05D004338 ORTHO05D005205 7.6e-21 105.1 82 70.7
HanXRQChr12g0381191 Helianthus annuus HOM05D004338 ORTHO05D005205 1.0e-20 104.8 105 58.1
Prupe.1G027100 Prunus persica HOM05D004338 ORTHO05D005205 1.3e-20 104.4 84 69.0
Lj5g0007630 Lotus japonicus HOM05D004338 ORTHO05D005205 1.7e-20 104.0 79 68.4
QL06p015078 Quercus lobata HOM05D004338 ORTHO05D005205 1.7e-20 104.0 82 69.5
VMungo0720G2420 Vigna mungo HOM05D004338 ORTHO05D005205 1.7e-20 104.0 79 68.4
AL6G12230 Arabidopsis lyrata HOM05D004338 ORTHO05D005205 2.2e-20 103.6 82 67.1
AT5G02940 Arabidopsis thaliana HOM05D004338 ORTHO05D005205 2.2e-20 103.6 82 67.1
CANSAT78G1672 Cannabis sativa HOM05D004338 ORTHO05D005205 2.2e-20 103.6 82 70.7
ClCG05G004690 Citrullus lanatus HOM05D004338 ORTHO05D005205 2.2e-20 103.6 79 70.9
Eucgr.H00218 Eucalyptus grandis HOM05D004338 ORTHO05D005205 2.2e-20 103.6 80 71.2
GSVIVG01018095001 Vitis vinifera HOM05D004338 ORTHO05D005205 2.2e-20 103.6 82 69.5
ECA233G2689 Erigeron canadensis HOM05D004338 ORTHO05D005205 2.9e-20 103.2 79 69.6
FAN22G2191 Fragaria x ananassa HOM05D004338 ORTHO05D005205 2.9e-20 103.2 82 69.5
Glyma.20G210700 Glycine max HOM05D004338 ORTHO05D005205 2.9e-20 103.2 79 69.6
Manes.03G170100 Manihot esculenta HOM05D004338 ORTHO05D005205 2.9e-20 103.2 82 69.5
Dinv44613 Davidia involucrata HOM05D004338 ORTHO05D005205 3.8e-20 102.8 79 70.9
Nn1g02554 Nelumbo nucifera HOM05D004338 ORTHO05D005205 3.8e-20 102.8 82 67.1
Peaxi162Scf01416g00020 Petunia axillaris HOM05D004338 ORTHO05D005205 3.8e-20 102.8 79 70.9
TWI73G0220 Tripterygium wilfordii HOM05D004338 ORTHO05D005205 3.8e-20 102.8 82 69.5
COL.COLO4_15767 Corchorus olitorius HOM05D004338 ORTHO05D005205 4.9e-20 102.4 83 67.5
Lsat_1_v5_gn_5_67480 Lactuca sativa HOM05D004338 ORTHO05D005205 4.9e-20 102.4 82 68.3
Lalb_Chr02g0150011 Lupinus albus HOM05D004338 ORTHO05D005205 4.9e-20 102.4 82 68.3
MD16G1206000 Malus domestica HOM05D004338 ORTHO05D005205 4.9e-20 102.4 84 67.9
Actinidia08449 Actinidia chinensis HOM05D004338 ORTHO05D005205 6.5e-20 102.1 79 70.9
arahy.Tifrunner.gnm1.ann1.A4GDND Arachis hypogaea HOM05D004338 ORTHO05D005205 6.5e-20 102.1 79 69.6
Medtr1g076330 Medicago truncatula HOM05D004338 ORTHO05D005205 6.5e-20 102.1 82 65.9
Potri.010G078600 Populus trichocarpa HOM05D004338 ORTHO05D005205 6.5e-20 102.1 79 70.9
Cfa008398 Carpinus fangiana HOM05D004338 ORTHO05D005205 8.4e-20 101.7 79 69.6
Ciclev10004298m.g Citrus clementina HOM05D004338 ORTHO05D005205 8.4e-20 101.7 82 67.1
CsaV3_3G012690 Cucumis sativus L. HOM05D004338 ORTHO05D005205 8.4e-20 101.7 79 69.6
Phvul.003G138460 Phaseolus vulgaris HOM05D004338 ORTHO05D005205 8.4e-20 101.7 78 69.2
Actinidia40096 Actinidia chinensis HOM05D004338 ORTHO05D005205 1.1e-19 101.3 79 69.6
AT5G43745 Arabidopsis thaliana HOM05D004338 ORTHO05D005205 1.1e-19 101.3 82 65.9
arahy.Tifrunner.gnm1.ann1.5I9I5Q Arachis hypogaea HOM05D004338 ORTHO05D005205 1.1e-19 101.3 79 69.6
arahy.Tifrunner.gnm1.ann1.EA06G0 Arachis hypogaea HOM05D004338 ORTHO05D005205 1.1e-19 101.3 79 69.6
BcaB07g30561 Brassica carinata HOM05D004338 ORTHO05D005205 1.1e-19 101.3 84 67.9
Carub.0006s0174 Capsella rubella HOM05D004338 ORTHO05D005205 1.1e-19 101.3 82 64.6
AL8G16520 Arabidopsis lyrata HOM05D004338 ORTHO05D005205 1.4e-19 100.9 82 65.9
AL8G16540 Arabidopsis lyrata HOM05D004338 ORTHO05D005205 1.4e-19 100.9 82 65.9
CSS0020604 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 1.4e-19 100.9 79 69.6
Glyma.10G179700 Glycine max HOM05D004338 ORTHO05D005205 1.4e-19 100.9 79 68.4
Gohir.A09G222100 Gossypium hirsutum HOM05D004338 ORTHO05D005205 1.4e-19 100.9 82 68.3
Oeu003600.1 Olea europaea HOM05D004338 ORTHO05D005205 1.4e-19 100.9 79 67.1
PGR142G2602 Punica granatum HOM05D004338 ORTHO05D005205 1.4e-19 100.9 80 70.0
Gohir.D09G224200 Gossypium hirsutum HOM05D004338 ORTHO05D005205 1.9e-19 100.5 79 69.6
Gorai.006G245700 Gossypium raimondii HOM05D004338 ORTHO05D005205 1.9e-19 100.5 79 69.6
Psat6g113560 Pisum sativum HOM05D004338 ORTHO05D005205 1.9e-19 100.5 82 65.9
Atru.chr4.2282 Acer truncatum HOM05D004338 ORTHO05D005205 2.5e-19 100.1 82 67.1
CAN.G626.12 Capsicum annuum HOM05D004338 ORTHO05D005205 2.5e-19 100.1 79 68.4
Haze_11270 Corylus avellana HOM05D004338 ORTHO05D005205 2.5e-19 100.1 79 67.1
SalBow2G1414 Salvia bowleyana HOM05D004338 ORTHO05D005205 2.5e-19 100.1 79 65.8
Sp2g08530 Schrenkiella parvula HOM05D004338 ORTHO05D005205 2.5e-19 100.1 82 68.3
Sc13g0004920 Simmondsia chinensis HOM05D004338 ORTHO05D005205 2.5e-19 100.1 82 65.9
Sopen09g032180 Solanum pennellii HOM05D004338 ORTHO05D005205 2.5e-19 100.1 79 68.4
Ca_09879_v3 Cicer arietinum L. HOM05D004338 ORTHO05D005205 3.2e-19 99.8 79 67.1
MELO3C006480.2 Cucumis melo HOM05D004338 ORTHO05D005205 3.2e-19 99.8 79 68.4
BraA09t41125Z Brassica rapa HOM05D004338 ORTHO05D005205 4.2e-19 99.4 82 65.9
CiPaw.02G117900 Carya illinoinensis HOM05D004338 ORTHO05D005205 4.2e-19 99.4 82 67.1
SGA_v2.0_scaffold101G29777 Striga asiatica HOM05D004338 ORTHO05D005205 4.2e-19 99.4 79 69.6
AL37U10030 Arabidopsis lyrata HOM05D004338 ORTHO05D005205 5.5e-19 99.0 82 64.6
BcaC03g16592 Brassica carinata HOM05D004338 ORTHO05D005205 5.5e-19 99.0 82 67.1
A02p27940 Brassica napus HOM05D004338 ORTHO05D005205 5.5e-19 99.0 82 67.1
C02p44140 Brassica napus HOM05D004338 ORTHO05D005205 5.5e-19 99.0 82 67.1
BolC2t10456H Brassica oleracea HOM05D004338 ORTHO05D005205 5.5e-19 99.0 82 67.1
BraA02t07831Z Brassica rapa HOM05D004338 ORTHO05D005205 5.5e-19 99.0 82 67.1
Nitab4.5_0004203g0030 Nicotiana tabacum HOM05D004338 ORTHO05D005205 5.5e-19 99.0 82 65.9
Migut.G00416 Erythranthe guttata HOM05D004338 ORTHO05D005205 7.1e-19 98.6 77 68.8
RcHm_v2.0_Chr4g0389561 Rosa chinensis HOM05D004338 ORTHO05D005205 7.1e-19 98.6 82 67.1
Sed0024916 Sechium edule HOM05D004338 ORTHO05D005205 7.1e-19 98.6 79 67.1
Aqoxy2G03524 Aquilegia oxysepala HOM05D004338 ORTHO05D005205 9.3e-19 98.2 82 64.6
Duzib151G0366 Durio zibethinus HOM05D004338 ORTHO05D005205 9.3e-19 98.2 79 68.4
Lalb_Chr03g0037911 Lupinus albus HOM05D004338 ORTHO05D005205 9.3e-19 98.2 82 64.6
TAR365G0259 Trochodendron aralioides HOM05D004338 ORTHO05D005205 9.3e-19 98.2 82 65.9
Aa31LG5G3510 Aethionema arabicum HOM05D004338 ORTHO05D005205 1.2e-18 97.8 79 68.4
Carub.0008s0490 Capsella rubella HOM05D004338 ORTHO05D005205 1.2e-18 97.8 82 63.4
BcaC07g41038 Brassica carinata HOM05D004338 ORTHO05D005205 1.6e-18 97.4 82 64.6
A09p57320 Brassica napus HOM05D004338 ORTHO05D005205 1.6e-18 97.4 82 64.6
C08p40410 Brassica napus HOM05D004338 ORTHO05D005205 1.6e-18 97.4 82 64.6
BolC8t51609H Brassica oleracea HOM05D004338 ORTHO05D005205 1.6e-18 97.4 82 64.6
Gohir.D10G152700 Gossypium hirsutum HOM05D004338 ORTHO05D005205 1.6e-18 97.4 82 65.9
MBI04_g06839_MAGBIO Magnolia biondii HOM05D004338 ORTHO05D005205 1.6e-18 97.4 79 64.6
RcHm_v2.0_Chr4g0389581 Rosa chinensis HOM05D004338 ORTHO05D005205 1.6e-18 97.4 82 65.9
Thecc.04G243900 Theobroma cacao HOM05D004338 ORTHO05D005205 1.6e-18 97.4 82 67.1
TPR.G14022 Trifolium pratense HOM05D004338 ORTHO05D005205 1.6e-18 97.4 82 63.4
Gohir.A09G057200 Gossypium hirsutum HOM05D004338 ORTHO05D005205 2.1e-18 97.1 79 67.1
Gorai.006G070000 Gossypium raimondii HOM05D004338 ORTHO05D005205 2.1e-18 97.1 79 67.1
PSO210G3643 Papaver somniferum HOM05D004338 ORTHO05D005205 2.1e-18 97.1 82 64.6
BcaB08g35114 Brassica carinata HOM05D004338 ORTHO05D005205 2.7e-18 96.7 82 64.6
BcaB08g35592 Brassica carinata HOM05D004338 ORTHO05D005205 3.5e-18 96.3 82 63.4
AUR62006783 Chenopodium quinoa HOM05D004338 ORTHO05D005205 4.6e-18 95.9 77 66.2
Thhalv10003159m.g Eutrema salsugineum HOM05D004338 ORTHO05D005205 4.6e-18 95.9 80 67.5
Gohir.D09G056400 Gossypium hirsutum HOM05D004338 ORTHO05D005205 6.0e-18 95.5 79 65.8
TAR636G0266 Trochodendron aralioides HOM05D004338 ORTHO05D005205 6.0e-18 95.5 79 67.1
Hund21850 Selenicereus undatus HOM05D004338 ORTHO05D005205 7.9e-18 95.1 79 65.8
Gohir.A10G114400 Gossypium hirsutum HOM05D004338 ORTHO05D005205 1.0e-17 94.7 78 66.7
vmacro08400 Vaccinium macrocarpon HOM05D004338 ORTHO05D005205 1.0e-17 94.7 79 65.8
PSO238G0023 Papaver somniferum HOM05D004338 ORTHO05D005205 1.3e-17 94.4 78 65.4
CSS0005407 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.3e-17 93.6 95 48.4
CSS0041535 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.3e-17 93.6 130 40.8
EL10Ac4g09514 Beta vulgaris HOM05D004338 ORTHO05D005205 3.0e-17 93.2 82 62.2
Rhsim04G0194700 Rhododendron simsii HOM05D004338 ORTHO05D005205 3.0e-17 93.2 94 60.6
CSS0045565 Camellia sinensis var. sinensis HOM05D014708 ORTHO05D000004 6.7e-17 92.0 153 35.3
Hund07295 Selenicereus undatus HOM05D004338 ORTHO05D005205 1.5e-16 90.9 78 62.8
CDE03G0382 Ceratophyllum demersum HOM05D004338 ORTHO05D005205 2.5e-16 90.1 79 59.5
unitig_748.g7312 Utricularia gibba HOM05D004338 ORTHO05D005205 4.3e-16 89.4 96 53.1
Zm00001eb004780 Zea mays HOM05D004338 ORTHO05D005205 9.6e-16 88.2 87 55.2
HPP92_009627 Vanilla planifolia HOM05D004338 ORTHO05D005205 2.1e-15 87.0 79 59.5
Lj6C654G1 Lonicera japonica HOM05D004338 ORTHO05D005205 2.8e-15 86.7 76 63.2
Os03g0163100 Oryza sativa ssp. japonica HOM05D004338 ORTHO05D005205 3.7e-15 86.3 87 55.2
DCAR_000306 Daucus carota HOM05D004338 ORTHO05D005205 4.8e-15 85.9 84 60.7
DCAR_024200 Daucus carota HOM05D004338 ORTHO05D005205 4.8e-15 85.9 84 60.7
ATR0665G279 Amborella trichopoda HOM05D004338 ORTHO05D005205 1.1e-14 84.7 87 52.9
CSS0043164 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.6e-13 80.1 148 36.5
Sabra10G0064800 Salix brachista HOM05D004338 ORTHO05D005205 1.7e-12 77.4 65 64.6
CSS0008261 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.9e-11 73.9 103 42.7
CSS0022804 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.5e-11 73.6 70 51.4
CSS0000416 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.2e-11 73.2 99 39.4
CSS0030874 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.2e-11 73.2 70 50.0
arahy.Tifrunner.gnm1.ann1.1TW0Z8 Arachis hypogaea HOM05D004338 ORTHO05D005205 5.5e-11 72.4 85 51.8
CSS0016147 Camellia sinensis var. sinensis HOM05D002020 ORTHO05D002046 9.3e-11 71.6 98 44.9
CSS0027547 Camellia sinensis var. sinensis HOM05D007770 ORTHO05D009827 1.2e-10 71.2 71 52.1
CSS0007080 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 4.6e-10 69.3 71 50.7
AagrBONN_evm.TU.Sc2ySwM_117.2360 Anthoceros agrestis HOM05D004338 ORTHO05D005205 1.0e-09 68.2 82 46.3
SMO340G0070 Selaginella moellendorffii HOM05D004338 ORTHO05D005205 1.3e-09 67.8 112 35.7
AagrBONN_evm.TU.Sc2ySwM_117.2350 Anthoceros agrestis HOM05D004338 ORTHO05D005205 3.0e-09 66.6 109 41.3
Pp3c17_14700 Physcomitrium patens HOM05D004338 ORTHO05D005205 3.9e-09 66.2 92 39.1
SMO174G0094 Selaginella moellendorffii HOM05D004338 ORTHO05D005205 5.1e-09 65.9 110 37.3
SEGI_13030 Sequoiadendron giganteum HOM05D004338 ORTHO05D005205 6.7e-09 65.5 84 42.9
CSS0025653 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 8.7e-09 65.1 64 51.6
FAN02G4304 Fragaria x ananassa HOM05D004338 ORTHO05D005205 8.7e-09 65.1 60 61.7
CSS0021346 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.3e-07 61.2 122 35.2
CARHR179760 Cardamine hirsuta HOM05D004338 ORTHO05D005205 1.3e-07 61.2 39 79.5
CSS0011611 Camellia sinensis var. sinensis HOM05D002853 ORTHO05D003030 2.8e-07 60.1 91 38.5
CSS0015726 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.7e-07 59.7 72 45.8
CSS0046313 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 6.3e-07 58.9 50 56.0
CSS0005323 Camellia sinensis var. sinensis HOM05D014708 ORTHO05D018827 1.4e-06 57.8 88 40.9
CSS0018127 Camellia sinensis var. sinensis HOM05D014708 ORTHO05D018827 1.4e-06 57.8 88 40.9
CSS0011681 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.8e-06 57.4 55 49.1
CSS0002910 Camellia sinensis var. sinensis HOM05D014708 ORTHO05D018827 3.1e-06 56.6 88 39.8
MBI04_g19005_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 3.1e-06 56.6 78 34.6


User provided reference genes

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