Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034519 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 4.8e-52 207.6 108 100.0
CSS0003098 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 4.8e-28 127.9 96 76.0
CSS0005464 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 6.5e-25 117.5 95 71.6
Lj8A530G14 Lonicera japonica HOM05D005314 ORTHO05D006522 5.5e-24 114.4 95 69.5
Dinv22878 Davidia involucrata HOM05D005314 ORTHO05D006522 7.2e-24 114.0 95 68.4
Migut.A00114 Erythranthe guttata HOM05D005314 ORTHO05D006522 9.4e-24 113.6 95 68.4
Rhsim11G0042200 Rhododendron simsii HOM05D005314 ORTHO05D006522 9.4e-24 113.6 95 67.4
SGA_v2.0_scaffold20G09204 Striga asiatica HOM05D005314 ORTHO05D006522 9.4e-24 113.6 95 68.4
vmacro00123 Vaccinium macrocarpon HOM05D005314 ORTHO05D006522 9.4e-24 113.6 95 67.4
Hma1.2p1_0544F.1_g175630 Hydrangea macrophylla HOM05D005314 ORTHO05D006522 1.6e-23 112.8 95 67.4
COL.COLO4_21084 Corchorus olitorius HOM05D005314 ORTHO05D006522 2.1e-23 112.5 95 66.3
Nn8g38796 Nelumbo nucifera HOM05D005314 ORTHO05D006522 2.1e-23 112.5 95 66.3
Actinidia30326 Actinidia chinensis HOM05D005314 ORTHO05D006522 2.7e-23 112.1 95 67.4
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 7.9e-23 110.5 95 66.3
CANSAT25G2280 Cannabis sativa HOM05D005314 ORTHO05D006522 1.0e-22 110.2 95 66.3
Sabra18G0054400 Salix brachista HOM05D005314 ORTHO05D006522 1.0e-22 110.2 98 62.2
Cpa.g.sc7.159 Carica papaya HOM05D005314 ORTHO05D006522 1.4e-22 109.8 94 61.7
Gohir.A07G021950 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.4e-22 109.8 95 64.2
Gorai.001G022500 Gossypium raimondii HOM05D005314 ORTHO05D006522 1.4e-22 109.8 95 64.2
Thecc.09G057100 Theobroma cacao HOM05D005314 ORTHO05D006522 1.4e-22 109.8 95 64.2
Gohir.A13G187700 Gossypium hirsutum HOM05D005314 ORTHO05D006522 2.3e-22 109.0 95 64.2
Gohir.D13G194600 Gossypium hirsutum HOM05D005314 ORTHO05D006522 2.3e-22 109.0 95 64.2
Gorai.013G220600 Gossypium raimondii HOM05D005314 ORTHO05D006522 2.3e-22 109.0 95 64.2
Manes.03G050000 Manihot esculenta HOM05D005314 ORTHO05D006522 2.3e-22 109.0 95 65.3
Potri.006G226000 Populus trichocarpa HOM05D005314 ORTHO05D006522 2.3e-22 109.0 95 65.3
TWI32G0330 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 3.0e-22 108.6 95 65.3
TWI34G0632 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 3.0e-22 108.6 95 65.3
GSVIVG01035376001 Vitis vinifera HOM05D005314 ORTHO05D006522 3.0e-22 108.6 95 66.3
CiPaw.16G027100 Carya illinoinensis HOM05D005314 ORTHO05D006522 3.9e-22 108.2 95 65.3
Eucgr.C03058 Eucalyptus grandis HOM05D005314 ORTHO05D006522 3.9e-22 108.2 95 63.2
MBI01_g21122_MAGBIO Magnolia biondii HOM05D005314 ORTHO05D006522 3.9e-22 108.2 78 73.1
Cfa017974 Carpinus fangiana HOM05D005314 ORTHO05D006522 5.1e-22 107.8 95 64.2
Haze_18156 Corylus avellana HOM05D005314 ORTHO05D006522 5.1e-22 107.8 95 64.2
Phvul.009G078900 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 5.1e-22 107.8 95 63.2
Glyma.06G053100 Glycine max HOM05D005314 ORTHO05D006522 6.7e-22 107.5 95 65.3
Lj1g0000731 Lotus japonicus HOM05D005314 ORTHO05D006522 6.7e-22 107.5 95 65.3
Nitab4.5_0000268g0140 Nicotiana tabacum HOM05D005314 ORTHO05D006522 6.7e-22 107.5 95 64.2
Potri.018G060500 Populus trichocarpa HOM05D005314 ORTHO05D006522 6.7e-22 107.5 95 64.2
PGR044G2019 Punica granatum HOM05D005314 ORTHO05D006522 6.7e-22 107.5 95 65.3
MSTRG.25961 Avicennia marina HOM05D005314 ORTHO05D006522 8.8e-22 107.1 95 65.3
Ca_13152_v3 Cicer arietinum L. HOM05D005314 ORTHO05D006522 8.8e-22 107.1 95 63.2
Lalb_Chr11g0063171 Lupinus albus HOM05D005314 ORTHO05D006522 1.1e-21 106.7 95 64.2
Medtr1g015820 Medicago truncatula HOM05D005314 ORTHO05D006522 1.5e-21 106.3 95 62.1
PSO210G6321 Papaver somniferum HOM05D005314 ORTHO05D006522 1.5e-21 106.3 95 64.2
PSO210G6435 Papaver somniferum HOM05D005314 ORTHO05D006522 1.5e-21 106.3 95 64.2
QL02p000736 Quercus lobata HOM05D005314 ORTHO05D006522 1.5e-21 106.3 95 64.2
TAR369G0158 Trochodendron aralioides HOM05D005314 ORTHO05D006522 1.5e-21 106.3 95 63.2
TAR636G1106 Trochodendron aralioides HOM05D005314 ORTHO05D006522 1.5e-21 106.3 95 63.2
VMungo1309G2963 Vigna mungo HOM05D005314 ORTHO05D006522 1.5e-21 106.3 95 63.2
Cc08_g10890 Coffea canephora HOM05D005314 ORTHO05D006522 2.0e-21 105.9 95 63.2
Glyma.04G052700 Glycine max HOM05D005314 ORTHO05D006522 2.0e-21 105.9 95 64.2
Lalb_Chr14g0366381 Lupinus albus HOM05D005314 ORTHO05D006522 2.0e-21 105.9 96 63.5
Psat6g021480 Pisum sativum HOM05D005314 ORTHO05D006522 2.0e-21 105.9 95 62.1
SalBow4G3021 Salvia bowleyana HOM05D005314 ORTHO05D006522 2.0e-21 105.9 95 64.2
TPR.G13039 Trifolium pratense HOM05D005314 ORTHO05D006522 2.0e-21 105.9 95 63.2
Glyma.14G097400 Glycine max HOM05D005314 ORTHO05D006522 2.6e-21 105.5 95 63.2
Glyma.17G227100 Glycine max HOM05D005314 ORTHO05D006522 2.6e-21 105.5 95 63.2
MD15G1056700 Malus domestica HOM05D005314 ORTHO05D006522 2.6e-21 105.5 95 64.2
Peaxi162Scf01088g00005 Petunia axillaris HOM05D005314 ORTHO05D006522 2.6e-21 105.5 95 62.1
Solyc06g036780.3 Solanum lycopersicum HOM05D005314 ORTHO05D006522 2.6e-21 105.5 95 63.2
Sopen06g012940 Solanum pennellii HOM05D005314 ORTHO05D006522 2.6e-21 105.5 95 63.2
Atru.chr7.1939 Acer truncatum HOM05D005314 ORTHO05D006522 3.3e-21 105.1 96 63.5
Ciclev10008891m.g Citrus clementina HOM05D005314 ORTHO05D006522 3.3e-21 105.1 95 63.2
FvH4_2g31600 Fragaria vesca HOM05D005314 ORTHO05D006522 3.3e-21 105.1 95 64.2
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 3.3e-21 105.1 95 64.2
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 3.3e-21 105.1 95 64.2
FAN27G1630 Fragaria x ananassa HOM05D005314 ORTHO05D006522 3.3e-21 105.1 95 64.2
Lalb_Chr22g0356141 Lupinus albus HOM05D005314 ORTHO05D006522 3.3e-21 105.1 95 62.1
Prupe.1G409300 Prunus persica HOM05D005314 ORTHO05D006522 3.3e-21 105.1 95 64.2
arahy.Tifrunner.gnm1.ann1.GAY7D4 Arachis hypogaea HOM05D005314 ORTHO05D006522 4.4e-21 104.8 95 62.1
arahy.Tifrunner.gnm1.ann1.UTD444 Arachis hypogaea HOM05D005314 ORTHO05D006522 4.4e-21 104.8 95 62.1
CiPaw.15G037000 Carya illinoinensis HOM05D005314 ORTHO05D006522 4.4e-21 104.8 95 62.1
Lsat_1_v5_gn_6_14601 Lactuca sativa HOM05D005314 ORTHO05D006522 4.4e-21 104.8 90 65.6
MD08G1064900 Malus domestica HOM05D005314 ORTHO05D006522 5.7e-21 104.4 95 63.2
RcHm_v2.0_Chr6g0311221 Rosa chinensis HOM05D005314 ORTHO05D006522 5.7e-21 104.4 95 63.2
ATR0789G137 Amborella trichopoda HOM05D005314 ORTHO05D006522 9.7e-21 103.6 103 58.3
ECA233G4949 Erigeron canadensis HOM05D005314 ORTHO05D006522 9.7e-21 103.6 95 62.1
AUR62009122 Chenopodium quinoa HOM05D005314 ORTHO05D006522 1.7e-20 102.8 95 61.1
CAN.G130.11 Capsicum annuum HOM05D005314 ORTHO05D006522 2.2e-20 102.4 95 62.1
HanXRQChr08g0226511 Helianthus annuus HOM05D005314 ORTHO05D006522 2.2e-20 102.4 95 62.1
Phvul.001G037500 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 2.8e-20 102.1 95 60.0
Sed0024799 Sechium edule HOM05D005314 ORTHO05D006522 2.8e-20 102.1 95 61.1
VMungo0647G2045 Vigna mungo HOM05D005314 ORTHO05D006522 2.8e-20 102.1 95 60.0
CsaV3_4G035770 Cucumis sativus L. HOM05D005314 ORTHO05D006522 3.7e-20 101.7 95 61.1
Sed0001440 Sechium edule HOM05D005314 ORTHO05D006522 3.7e-20 101.7 95 60.0
ClCG05G017990 Citrullus lanatus HOM05D005314 ORTHO05D006522 8.2e-20 100.5 95 60.0
Oeu003996.1 Olea europaea HOM05D005314 ORTHO05D006522 8.2e-20 100.5 85 65.9
THA.LOC104811236 Tarenaya hassleriana HOM05D005314 ORTHO05D006522 1.1e-19 100.1 95 58.9
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 1.4e-19 99.8 95 61.1
Ah.10g034130 Amaranthus hybridus HOM05D005314 ORTHO05D006522 1.8e-19 99.4 95 60.0
Sp6g31630 Schrenkiella parvula HOM05D005314 ORTHO05D006522 1.8e-19 99.4 95 57.9
BcaC03g13403 Brassica carinata HOM05D005314 ORTHO05D006522 4.1e-19 98.2 95 57.9
BcaNung02637 Brassica carinata HOM05D005314 ORTHO05D006522 4.1e-19 98.2 95 57.9
A02p01290 Brassica napus HOM05D005314 ORTHO05D006522 4.1e-19 98.2 95 57.9
C02p05500 Brassica napus HOM05D005314 ORTHO05D006522 4.1e-19 98.2 95 57.9
C09p64870 Brassica napus HOM05D005314 ORTHO05D006522 4.1e-19 98.2 95 57.9
BolC2t06496H Brassica oleracea HOM05D005314 ORTHO05D006522 4.1e-19 98.2 95 57.9
BolC9t59318H Brassica oleracea HOM05D005314 ORTHO05D006522 4.1e-19 98.2 95 57.9
BraA02t05108Z Brassica rapa HOM05D005314 ORTHO05D006522 4.1e-19 98.2 95 57.9
AL6G22740 Arabidopsis lyrata HOM05D005314 ORTHO05D006522 5.3e-19 97.8 95 56.8
AT5G11960 Arabidopsis thaliana HOM05D005314 ORTHO05D006522 5.3e-19 97.8 95 56.8
A10p25800 Brassica napus HOM05D005314 ORTHO05D006522 5.3e-19 97.8 95 56.8
BraA10t44644Z Brassica rapa HOM05D005314 ORTHO05D006522 5.3e-19 97.8 95 56.8
Carub.0006s1050 Capsella rubella HOM05D005314 ORTHO05D006522 5.3e-19 97.8 95 56.8
CARHR201170 Cardamine hirsuta HOM05D005314 ORTHO05D006522 9.1e-19 97.1 95 56.8
Sc23g0005690 Simmondsia chinensis HOM05D005314 ORTHO05D006522 2.0e-18 95.9 95 57.9
Aa31LG3G15270 Aethionema arabicum HOM05D005314 ORTHO05D006522 4.5e-18 94.7 95 55.8
Thhalv10014010m.g Eutrema salsugineum HOM05D005314 ORTHO05D006522 4.5e-18 94.7 95 55.8
Hund19438 Selenicereus undatus HOM05D005314 ORTHO05D006522 4.5e-18 94.7 89 64.0
HPP92_007653 Vanilla planifolia HOM05D005314 ORTHO05D006522 7.7e-18 94.0 103 54.4
CDE06G1634 Ceratophyllum demersum HOM05D005314 ORTHO05D006522 1.7e-17 92.8 94 58.5
Hund03325 Selenicereus undatus HOM05D005314 ORTHO05D006522 8.5e-17 90.5 90 58.9
MELO3C016882.2 Cucumis melo HOM05D005314 ORTHO05D006522 7.2e-16 87.4 83 62.7
Zm00001eb155260 Zea mays HOM05D005314 ORTHO05D006522 9.4e-16 87.0 95 51.6
arahy.Tifrunner.gnm1.ann1.6D5JL1 Arachis hypogaea HOM05D005314 ORTHO05D006522 2.7e-15 85.5 50 86.0
arahy.Tifrunner.gnm1.ann1.VQ1HGR Arachis hypogaea HOM05D005314 ORTHO05D006522 2.7e-15 85.5 50 86.0
Sabra06G0174700 Salix brachista HOM05D005314 ORTHO05D006522 2.7e-15 85.5 50 86.0
arahy.Tifrunner.gnm1.ann1.IMU44M Arachis hypogaea HOM05D005314 ORTHO05D006522 4.7e-15 84.7 50 84.0
PGSC0003DMG400031356 Solanum tuberosum HOM05D005314 ORTHO05D006522 4.7e-15 84.7 61 72.1
unitig_88.g27677 Utricularia gibba HOM05D005314 ORTHO05D006522 4.7e-15 84.7 103 49.5
Lj7A260G18 Lonicera japonica HOM05D005314 ORTHO05D006522 8.0e-15 84.0 78 61.5
Mapoly0049s0128 Marchantia polymorpha HOM05D005314 ORTHO05D006522 2.8e-12 75.5 129 41.1
EL10Ac2g03829 Beta vulgaris HOM05D005314 ORTHO05D006522 5.3e-11 71.2 58 63.8
Pp3c7_50 Physcomitrium patens HOM05D005314 ORTHO05D006522 5.9e-10 67.8 90 42.2
Nitab4.5_0000972g0030 Nicotiana tabacum HOM05D005314 ORTHO05D006522 3.8e-09 65.1 35 97.1
CBR_g50008 Chara braunii HOM05D005314 ORTHO05D006522 6.5e-09 64.3 108 37.0
arahy.Tifrunner.gnm1.ann1.TY68CU Arachis hypogaea HOM05D005314 ORTHO05D005864 4.0e-06 55.1 33 81.8


User provided reference genes

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